Setup the freesurfer environment,
$ export FREESURFER_HOME=/Applications/freesurfer/7.4.0
$ source $FREESURFER_HOME/SetUpFreeSurfer.sh
-------- freesurfer-darwin-macOS-7.4.0-20230504-55dcf98 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /Applications/freesurfer/7.4.0
FSFAST_HOME /Applications/freesurfer/7.4.0/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/7.4.0/subjects
MNI_DIR /Applications/freesurfer/7.4.0/mni
$ which freeview
/Applications/freesurfer/7.4.0/bin/freeview
Then try running freeview with no arguments to see if it brings up an empty window,
$ freeview
If that works, quit freeview and try running it again with an example volume included in the distribution,
$ freeview $SUBJECTS_DIR/bert/mri/brain.mgz
If that works, quit freeview and try your own surface/volume files.
- R.
On May 31, 2023, at 17:05, Michelangelo Fabbrizzi <michefabb@gmail.com> wrote:
External Email - Use Caution
Dear Sirs,
I am new to Freesurfer. I installed as shown on website and added the license.txt, however when I open freeview I get an error "/Applications/freesurfer/7.4.0/bin/freeview: riga 2: 2047 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@“”
Attached the report.
Freesurfer version: freesurfer-darwin-macOS-7.4.0-20230510-e558e6e
Platform: MacOS12.6.6
Mac: Macbook Pro Intel Core i5 dual-core
XQuartz2.8.15
XQuartz2.8.5
Can you help me please?
Thanks!
Michelangelo
<report.txt>