I have a Python script to do this.

I don't know how to make this using asegatats2table, let's wait if somebody answer, otherwise I'll send you this script.

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Pedro Paulo de M. Oliveira Junior
CIO Latam
Netfilter & SpeedComm Telecom
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2009/7/14 Rosa Steimke <rosasteimke@gmx.de>
HI freesurfer experts!
i want to correct for intercranial volume in my qdec analysis.
To do that I want to generate a file in which the intracranial volume of each subject is listed. do i have to use the asegstats2tabel command?
I tried it and it gave me following error message:


asegstats2table --subjects 1 2 4 5 6 7 8 9 10 11 12 13 14 15 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 41 42 43 45 47 48 --meas volume --tablefile aseg_stats.txt
Traceback (most recent call last):
 File "/Applications/freesurfer/bin/asegstats2table", line 6, in <module>
   import fsutils
ImportError: No module named fsutils
[admins-imac:~/Rosa_MRTs] steimke% asegstats2table --subjects 1 2 4 5 6 7 8 9 10 11 12 13 14 15 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 41 42 43 45 47 48
Traceback (most recent call last):
 File "/Applications/freesurfer/bin/asegstats2table", line 6, in <module>
   import fsutils
ImportError: No module named fsutils

what did i do wrong? is this the right approach to get a ICV file?

thanks in advance!!!
Rosa



Rosa Steimke
Student Master of Neuroscience
Vrije Universiteit Amsterdam
Netherlands
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