We installed today (8 jan 2019) the last version of Freesurfer dev and the corresponding Runtime Matlab R2014b .
We had a couple of errors related to an Invalid Mex-file. We add the log.
We doubt if it may be related to the fact that our computer is not updated to OS El Capitan and we are using OS High Sierra. It is something very simple but we hadn’t realized until now or wether is something to the software.
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#@# Hippocampal Subfields processing (T1) left martes, 8 de enero de 2019, 18:25:06 CET
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Setting up environment variables
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DYLD_LIBRARY_PATH is .:/Applications/freesurfer/MCRv84//runtime/maci64:/Applications/freesurfer/MCRv84//bin/maci64:/Applications/freesurfer/MCRv84//sys/os/maci64:/Applications/freesurfer/lib/gcc/lib:
Invalid MEX-file '/tmp/MCR_583345147/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64': dlopen(/tmp/MCR_583345147/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64, 6): Symbol not found: __ZNKSt5ctypeIcE13_M_widen_initEv
Referenced from: /tmp/MCR_583345147/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64
Expected in: /usr/lib/libstdc++.6.0.9.dylib
in /tmp/MCR_583345147/.mcrCache8.4/segmen0/autofs/space/panamint_005/users/iglesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64
Error in kvlClear (line 11)
Error in segmentSubjectT1_autoEstimateAlveusML (line 115)
MATLAB:invalidMEXFile
Darwin MacBook-Air-de-Francesca.local 17.7.0 Darwin Kernel Version 17.7.0: Thu Jun 21 22:53:14 PDT 2018; root:xnu-4570.71.2~1/RELEASE_X86_64 x86_64
T1 hippocampal subfields exited with ERRORS at martes, 8 de enero de 2019, 18:25:19 CET
For more details, see the log file /Applications/freesurfer/subjects/bert/scripts/hippocampal-subfields-T1.log