Thu Mar 18 11:38:32 CET 2021 cd /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base setenv SUBJECTS_DIR /mnt/twork/yakupovr/DELCODEM12/fs7long/fs /share/apps/freesurfer_7.1/bin/recon-all -sd /mnt/twork/yakupovr/DELCODEM12/fs7long/fs -long 011d501d1-M0_T1_01 011d501d1_base -all subjid 011d501d1-M0_T1_01.long.011d501d1_base setenv SUBJECTS_DIR /mnt/twork/yakupovr/DELCODEM12/fs7long/fs FREESURFER_HOME /share/apps/freesurfer_7.1 Actual FREESURFER_HOME /share/apps/freesurfer_7.1 build-stamp.txt: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 Linux compute-0-2.local 2.6.32-504.16.2.el6.x86_64 #1 SMP Wed Apr 22 06:48:29 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse unlimited vmemoryuse 20971520 kbytes descriptors 1024 memorylocked 64 kbytes maxproc 1549530 ######################################## program versions used 7.1.1 (freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551) 7.1.1 ProgramName: lta_convert ProgramArguments: lta_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_and ProgramArguments: mri_and -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_annotation2label ProgramArguments: mri_annotation2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_aparc2aseg ProgramArguments: mri_aparc2aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_surf2volseg ProgramArguments: mri_surf2volseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_binarize ProgramArguments: mri_binarize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_ca_label ProgramArguments: mri_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_ca_normalize ProgramArguments: mri_ca_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_ca_register ProgramArguments: mri_ca_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_cc ProgramArguments: mri_cc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_compute_overlap ProgramArguments: mri_compute_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_compute_seg_overlap ProgramArguments: mri_compute_seg_overlap -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_concat ProgramArguments: mri_concat -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_concatenate_lta ProgramArguments: mri_concatenate_lta -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_diff ProgramArguments: mri_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_edit_wm_with_aseg ProgramArguments: mri_edit_wm_with_aseg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_em_register ProgramArguments: mri_em_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_fill ProgramArguments: mri_fill -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_fuse_segmentations ProgramArguments: mri_fuse_segmentations -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_fwhm ProgramArguments: mri_fwhm -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_gcut ProgramArguments: mri_gcut -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_info ProgramArguments: mri_info -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_label2label ProgramArguments: mri_label2label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_label2vol ProgramArguments: mri_label2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_log_likelihood ProgramArguments: mri_log_likelihood -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_mask ProgramArguments: mri_mask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_matrix_multiply ProgramArguments: mri_matrix_multiply -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_normalize ProgramArguments: mri_normalize -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_normalize_tp2 ProgramArguments: mri_normalize_tp2 -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_or ProgramArguments: mri_or -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_relabel_hypointensities ProgramArguments: mri_relabel_hypointensities -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_relabel_nonwm_hypos ProgramArguments: mri_relabel_nonwm_hypos -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_remove_neck ProgramArguments: mri_remove_neck -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 7.1.1 ProgramName: mri_robust_register ProgramArguments: mri_robust_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 7.1.1 ProgramName: mri_robust_template ProgramArguments: mri_robust_template -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_anatomical_stats ProgramArguments: mris_anatomical_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_ca_label ProgramArguments: mris_ca_label -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_calc ProgramArguments: mris_calc -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_convert ProgramArguments: mris_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_curvature ProgramArguments: mris_curvature -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_curvature_stats ProgramArguments: mris_curvature_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_diff ProgramArguments: mris_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_divide_parcellation ProgramArguments: mris_divide_parcellation -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_segment ProgramArguments: mri_segment -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_segstats ProgramArguments: mri_segstats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_euler_number ProgramArguments: mris_euler_number -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_fix_topology ProgramArguments: mris_fix_topology -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_jacobian ProgramArguments: mris_jacobian -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_label2annot ProgramArguments: mris_label2annot -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:32-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_left_right_register ProgramArguments: mris_left_right_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_place_surface ProgramArguments: mris_place_surface -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mrisp_paint ProgramArguments: mrisp_paint -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_register ProgramArguments: mris_register -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_smooth ProgramArguments: mris_smooth -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_sphere ProgramArguments: mris_sphere -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_surface_stats ProgramArguments: mris_surface_stats -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_stats2seg ProgramArguments: mri_stats2seg -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_thickness ProgramArguments: mris_thickness -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_thickness_diff ProgramArguments: mris_thickness_diff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_topo_fixer ProgramArguments: mris_topo_fixer -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_surf2surf ProgramArguments: mri_surf2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_surf2vol ProgramArguments: mri_surf2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_surfcluster ProgramArguments: mri_surfcluster -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mris_volmask ProgramArguments: mris_volmask -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_tessellate ProgramArguments: mri_tessellate -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_vol2surf ProgramArguments: mri_vol2surf -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_vol2vol ProgramArguments: mri_vol2vol -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_voldiff ProgramArguments: mri_voldiff -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: mri_watershed ProgramArguments: mri_watershed -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 ProgramName: tkregister2 ProgramArguments: tkregister2_cmdl -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 mri_motion_correct.fsl 7.1.1 mri_convert -all-info ProgramName: mri_convert ProgramArguments: mri_convert -all-info ProgramVersion: 7.1.1 TimeStamp: 2021/03/18-10:38:33-GMT BuildTime: Jul 23 2020 13:43:33 BuildStamp: freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 User: ryakupov Machine: compute-0-2.local Platform: Linux PlatformVersion: 2.6.32-504.16.2.el6.x86_64 CompilerName: GCC CompilerVersion: 4.9.2 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ####################################### GCADIR /share/apps/freesurfer_7.1/average GCA RB_all_2020-01-02.gca GCASkull RB_all_withskull_2020_01_02.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /share/apps/freesurfer_7.1/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### longmc -long 011d501d1-M0_T1_01 011d501d1_base -s 011d501d1-M0_T1_01.long.011d501d1_base Thu Mar 18 11:38:33 CET 2021 setenv SUBJECTS_DIR /mnt/twork/yakupovr/DELCODEM12/fs7long/fs cd /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base /share/apps/freesurfer_7.1/bin/longmc -long 011d501d1-M0_T1_01 011d501d1_base -s 011d501d1-M0_T1_01.long.011d501d1_base freesurfer-linux-centos6_x86_64-7.1.1-20200723-8b40551 longmc 7.1.1 Linux compute-0-2.local 2.6.32-504.16.2.el6.x86_64 #1 SMP Wed Apr 22 06:48:29 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux pid 35290 mri_convert -at /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/011d501d1-M0_T1_01_to_011d501d1_base.lta -odt uchar -rt cubic /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01/mri/orig/001.mgz /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/orig.mgz mri_convert -at /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/011d501d1-M0_T1_01_to_011d501d1_base.lta -odt uchar -rt cubic /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01/mri/orig/001.mgz /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/orig.mgz reading from /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01/mri/orig/001.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0, -1, 0) j_ras = (0, 0, -1) k_ras = (1, 0, 0) INFO: Reading transformation from file /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/011d501d1-M0_T1_01_to_011d501d1_base.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/011d501d1-M0_T1_01_to_011d501d1_base.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99973 0.02251 -0.00543 -1.82234; -0.02254 0.99973 -0.00588 0.64095; 0.00529 0.00600 0.99997 3.46716; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 5) MRItoBSpline degree 3 changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram 0 1028.13 1000, flo=0, fhi=0.999, dest_type=0 writing to /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/orig.mgz... mri_convert -at /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/011d501d1-M0_T1_01_to_011d501d1_base.lta -rt cubic /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01/mri/orig/001.mgz /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/rawavg.mgz mri_convert -at /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/011d501d1-M0_T1_01_to_011d501d1_base.lta -rt cubic /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01/mri/orig/001.mgz /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/rawavg.mgz reading from /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01/mri/orig/001.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0, -1, 0) j_ras = (0, 0, -1) k_ras = (1, 0, 0) INFO: Reading transformation from file /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/011d501d1-M0_T1_01_to_011d501d1_base.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/011d501d1-M0_T1_01_to_011d501d1_base.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99973 0.02251 -0.00543 -1.82234; -0.02254 0.99973 -0.00588 0.64095; 0.00529 0.00600 0.99997 3.46716; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 5) MRItoBSpline degree 3 writing to /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/rawavg.mgz... Started at Thu Mar 18 11:38:33 CET 2021 Ended at Thu Mar 18 11:38:57 CET 2021 Longmc-Run-Time-Sec 24 Longmc-Run-Time-Min 0.48 Longmc-Run-Time-Hours 0.01 longmc Done @#@FSTIME 2021:03:18:11:38:33 longmc N 5 e 24.51 S 0.20 U 22.39 P 92% M 671648 F 0 R 21424 W 0 c 2467 w 4100 I 83712 O 80000 L 0.01 0.02 0.00 @#@FSLOADPOST 2021:03:18:11:38:57 longmc N 5 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/brainmask.mgz ./brainmask_011d501d1_base.mgz @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.01 S 0.00 U 0.00 P 20% M 7328 F 0 R 503 W 0 c 9 w 81 I 2232 O 2232 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/talairach.lta transforms/talairach.lta @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.00 S 0.00 U 0.00 P 14% M 3264 F 0 R 248 W 0 c 4 w 13 I 8 O 8 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/aseg.mgz aseg_011d501d1_base.mgz @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.00 S 0.00 U 0.00 P 33% M 4544 F 0 R 330 W 0 c 2 w 22 I 648 O 648 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/lh.white /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/lh.orig @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.03 S 0.01 U 0.00 P 48% M 7360 F 0 R 505 W 0 c 30 w 313 I 8664 O 8664 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/lh.white /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/lh.orig_white @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.02 S 0.01 U 0.00 P 40% M 7344 F 0 R 504 W 0 c 18 w 217 I 0 O 8664 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/lh.pial /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/lh.orig_pial @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.02 S 0.01 U 0.00 P 37% M 7344 F 0 R 504 W 0 c 11 w 400 I 8664 O 8664 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/rh.white /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/rh.orig @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.03 S 0.01 U 0.00 P 45% M 7344 F 0 R 505 W 0 c 42 w 348 I 8904 O 8904 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/rh.white /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/rh.orig_white @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.02 S 0.01 U 0.00 P 41% M 7344 F 0 R 504 W 0 c 14 w 315 I 0 O 8904 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/rh.pial /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/rh.orig_pial @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.03 S 0.01 U 0.00 P 37% M 7360 F 0 R 505 W 0 c 14 w 287 I 8904 O 8904 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts @#@FSTIME 2021:03:18:11:38:58 cp N 2 e 0.03 S 0.01 U 0.00 P 38% M 7248 F 0 R 498 W 0 c 13 w 273 I 8672 O 8672 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 2 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts @#@FSTIME 2021:03:18:11:38:58 cp N 2 e 0.03 S 0.01 U 0.00 P 48% M 7248 F 0 R 498 W 0 c 20 w 257 I 8904 O 8904 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 2 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts Started at Thu Mar 18 11:38:33 CET 2021 Ended at Thu Mar 18 11:38:58 CET 2021 rca-long-tp-init Done /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/lh.white /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/lh.orig @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.02 S 0.01 U 0.00 P 42% M 7344 F 0 R 505 W 0 c 7 w 162 I 0 O 8664 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/lh.white /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/lh.orig_white @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.02 S 0.01 U 0.00 P 45% M 7344 F 0 R 505 W 0 c 8 w 216 I 0 O 8664 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/lh.pial /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/lh.orig_pial @#@FSTIME 2021:03:18:11:38:58 cp N 4 e 0.02 S 0.01 U 0.00 P 60% M 7344 F 0 R 504 W 0 c 11 w 272 I 0 O 8664 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:58 cp N 4 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/rh.white /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/rh.orig @#@FSTIME 2021:03:18:11:38:59 cp N 4 e 0.02 S 0.01 U 0.00 P 47% M 7344 F 0 R 504 W 0 c 6 w 302 I 0 O 8904 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:59 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/rh.white /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/rh.orig_white @#@FSTIME 2021:03:18:11:38:59 cp N 4 e 0.02 S 0.01 U 0.00 P 45% M 7344 F 0 R 504 W 0 c 7 w 251 I 0 O 8904 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:59 cp N 4 1.37 0.34 0.11 cp -f -p /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/surf/rh.pial /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/surf/rh.orig_pial @#@FSTIME 2021:03:18:11:38:59 cp N 4 e 0.02 S 0.01 U 0.00 P 50% M 7344 F 0 R 504 W 0 c 8 w 343 I 0 O 8904 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:59 cp N 4 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts @#@FSTIME 2021:03:18:11:38:59 cp N 2 e 0.02 S 0.00 U 0.00 P 36% M 7248 F 0 R 499 W 0 c 7 w 248 I 0 O 8672 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:59 cp N 2 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts @#@FSTIME 2021:03:18:11:38:59 cp N 2 e 0.02 S 0.01 U 0.00 P 52% M 7248 F 0 R 499 W 0 c 6 w 280 I 0 O 8904 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:38:59 cp N 2 1.37 0.34 0.11 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/scripts Started at Thu Mar 18 11:38:58 CET 2021 Ended at Thu Mar 18 11:38:59 CET 2021 rca-long-tp-init Done #-------------------------------------------- #@# MotionCor Thu Mar 18 11:38:59 CET 2021 mri_add_xform_to_header -c /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/transforms/talairach.xfm /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/orig.mgz /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/orig.mgz INFO: extension is mgz @#@FSTIME 2021:03:18:11:38:59 mri_add_xform_to_header N 4 e 1.33 S 0.04 U 1.24 P 97% M 82352 F 0 R 1887 W 0 c 884 w 492 I 0 O 12992 L 1.37 0.34 0.11 @#@FSLOADPOST 2021:03:18:11:39:00 mri_add_xform_to_header N 4 1.50 0.38 0.12 #-------------------------------------------- #@# Talairach Thu Mar 18 11:39:00 CET 2021 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri cp /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1_base/mri/transforms/talairach.xfm /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... @#@FSTIME 2021:03:18:11:39:00 cp N 2 e 0.00 S 0.00 U 0.00 P 0% M 3184 F 0 R 243 W 0 c 3 w 9 I 8 O 8 L 1.50 0.38 0.12 @#@FSLOADPOST 2021:03:18:11:39:00 cp N 2 1.50 0.38 0.12 cp transforms/talairach.auto.xfm transforms/talairach.xfm lta_convert --src orig.mgz --trg /share/apps/freesurfer_7.1/average/mni305.cor.mgz --inxfm transforms/talairach.xfm --outlta transforms/talairach.xfm.lta --subject fsaverage --ltavox2vox 7.1.1 --src: orig.mgz src image (geometry). --trg: /share/apps/freesurfer_7.1/average/mni305.cor.mgz trg image (geometry). --inmni: transforms/talairach.xfm input MNI/XFM transform. --outlta: transforms/talairach.xfm.lta output LTA. --s: fsaverage subject name --ltavox2vox: output LTA as VOX_TO_VOX transform. LTA read, type : 1 1.15182 0.00862 0.00858 -1.75166; -0.00823 1.15147 0.40042 6.00684; -0.01362 -0.47457 1.23304 -12.33936; 0.00000 0.00000 0.00000 1.00000; setting subject to fsaverage Writing LTA to file transforms/talairach.xfm.lta... lta_convert successful. #-------------------------------------------- #@# Talairach Failure Detection Thu Mar 18 11:39:03 CET 2021 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.6330, pval=0.3663 >= threshold=0.0050) @#@FSTIME 2021:03:18:11:39:03 talairach_afd N 4 e 0.00 S 0.00 U 0.00 P 50% M 8128 F 0 R 575 W 0 c 2 w 15 I 0 O 0 L 1.50 0.38 0.12 @#@FSLOADPOST 2021:03:18:11:39:03 talairach_afd N 4 1.50 0.38 0.12 #-------------------------------------------- #@# Nu Intensity Correction Thu Mar 18 11:39:03 CET 2021 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 /usr/bin/bc /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri /share/apps/freesurfer_7.1/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 --ants-n4 nIters 2 mri_nu_correct.mni 7.1.1 Linux compute-0-2.local 2.6.32-504.16.2.el6.x86_64 #1 SMP Wed Apr 22 06:48:29 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux Thu Mar 18 11:39:03 CET 2021 Found /dev/shm , will use for temp dir tmpdir is /dev/shm/tmp.mri_nu_correct.mni.38543 cd /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri AntsN4BiasFieldCorrectionFs -i orig.mgz -o /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz Using shrink factor: 4 mri_binarize --i /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz --min -1 --o /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz 7.1.1 cwd /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri cmdline mri_binarize --i /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz --min -1 --o /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz sysname Linux hostname compute-0-2.local machine x86_64 user ryakupov input /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz frame 0 nErode3d 0 nErode2d 0 output /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777215 voxels in final mask Count: 16777215 16777215.000000 16777216 99.999994 mri_binarize done mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz --i orig.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.38543/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.38543/input.mean.dat 7.1.1 cwd cmdline mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz --i orig.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.38543/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.38543/input.mean.dat sysname Linux hostname compute-0-2.local machine x86_64 user ryakupov whitesurfname white UseRobust 0 Loading /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /dev/shm/tmp.mri_nu_correct.mni.38543/input.mean.dat mri_segstats done mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz --i /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.38543/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.38543/output.mean.dat 7.1.1 cwd cmdline mri_segstats --id 1 --seg /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz --i /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz --sum /dev/shm/tmp.mri_nu_correct.mni.38543/sum.junk --avgwf /dev/shm/tmp.mri_nu_correct.mni.38543/output.mean.dat sysname Linux hostname compute-0-2.local machine x86_64 user ryakupov whitesurfname white UseRobust 0 Loading /dev/shm/tmp.mri_nu_correct.mni.38543/ones.mgz Loading /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to /dev/shm/tmp.mri_nu_correct.mni.38543/output.mean.dat mri_segstats done mris_calc -o /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz mul 1.06546752170620566223 Saving result to '/dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz' (type = MGH ) [ ok ] mri_convert /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz nu.mgz --like orig.mgz mri_convert /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz nu.mgz --like orig.mgz reading from /dev/shm/tmp.mri_nu_correct.mni.38543/nu0.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 6 seconds. mapping (31, 215) to ( 3, 110) Thu Mar 18 11:42:19 CET 2021 mri_nu_correct.mni done @#@FSTIME 2021:03:18:11:39:03 mri_nu_correct.mni N 9 e 196.59 S 0.73 U 195.68 P 99% M 2444688 F 0 R 176425 W 0 c 20056 w 1080 I 0 O 26528 L 1.50 0.38 0.12 @#@FSLOADPOST 2021:03:18:11:42:19 mri_nu_correct.mni N 9 3.90 2.11 0.85 mri_add_xform_to_header -c /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz @#@FSTIME 2021:03:18:11:42:19 mri_add_xform_to_header N 4 e 0.50 S 0.00 U 0.47 P 96% M 82624 F 0 R 1905 W 0 c 61 w 151 I 0 O 6344 L 3.90 2.11 0.85 @#@FSLOADPOST 2021:03:18:11:42:20 mri_add_xform_to_header N 4 3.90 2.11 0.85 #-------------------------------------------- #@# Intensity Normalization Thu Mar 18 11:42:20 CET 2021 /mnt/twork/yakupovr/DELCODEM12/fs7long/fs/011d501d1-M0_T1_01.long.011d501d1_base/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 200 --ants-n4 Linux compute-0-2.local 2.6.32-504.16.2.el6.x86_64 #1 SMP Wed Apr 22 06:48:29 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux recon-all -s 011d501d1-M0_T1_01.long.011d501d1_base exited with ERRORS at Thu Mar 18 11:42:20 CET 2021 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting