Dear all,
I have seen this error mentioned several times on the list but I have never seen a solution posted. It is claimed that there is a patch and a README that explains the patch at:
In this folder there are a bunch of files but there is no README so I am not sure what exactly I need to do. I tried replacing the files in my /usr/local/freesurfer/bin with those in this patch folder but the error remains. This error appears with all my data sets that I have tried. So it doesnt seem to be something specific to my data.
Loading aseg from /media/fMRI_21/studyname/freesurfer/avgsub3/mri/aseg.presurf.hypos.mgz
ASeg Vox2RAS: -----------
-1.00000 0.00000 0.00000 128.00000;
0.00000 0.00000 1.00000 -128.00000;
0.00000 -1.00000 0.00000 128.00000;
0.00000 0.00000 0.00000 1.00000;
mghRead(mri/norm.mgz, -1): could not open file
-------------------------
Labeling Slice
relabeling unlikely voxels in interior of white matter
Segmentation fault (core dumped)
Linux nielsj-XXXYYY 4.18.0-25-generic #26~18.04.1-Ubuntu SMP Thu Jun 27 07:28:31 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s avgsub3 exited with ERRORS at mié jul 31 12:05:20 WEST 2019
--
Niels Janssen
Brain Imaging Laboratory
Institute of Biomedical Technologies
Institute of Neurosciences
University of La Laguna
Tenerife, Spain