Dear FreeSurfer Users,
I'm using FreeSurfer version 6.0. I've processing subjects with recon-all and performed surface-based interhemispheric registration (via Xhemi at https://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi).
I want to run a GLM on the subjects Area and Thickness from the differences (Left minus Right). When stacking subjects asymmetry
maps, I wanted to use a "--cache-only".
> recon-all -qcache -measure area -target fsaverage_sym -fwhm 10 -no-isrunning -s subjid -hemi lh
for area at FWHM = 10.
This would create files with the left hemisphere area registered to fsaverage_sym at smoothing FWHM = 10:
$subjid/surf/lh.area.fwhm10.fsaverage_sym.mgh
However, how do I do this also for the xhemi registration? I.e. create a file like $subjid/xhemi/surf/lh.area.fwhm10.fsaverage_sym.mgh
Then, if I do this, can I stack the subjects using something like:
> mris_preproc --target fsaverage_sym --hemi lh
--xhemi --paired-diff \
--srcsurfreg fsaverage_sym.sphere.reg \
--cache-in
area.fwhm10.fsaverage_sym \
--out lh.lh-rh.area.sm10.mgh \
--s subj1 --s subj2 ...
Thank you.
Best,
Chintan
mris_preproc --target fsaverage_sym --hemi lh
--xhemi --paired-diff \
--srcsurfreg fsaverage_sym.sphere.reg \
--meas thickness \
--out lh.lh-rh.thickness.sm00.mgh \
--s subj1 --s subj2 ...