yep, you'll need a new version of mri_segstats, which you can find by
following the thread that Louis posted
doug
On 02/26/2014 12:32 PM, Louis Nicholas Vinke wrote:
> Hi Sabin,
> What command did you run?  Sending the recon-all.log file in the
> scripts dir might be a little more helpful.  It's failing because the
> ribbon.mgz does not exist which requires surfaces.
>
> This thread might be relevant:
> http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg32876.html
>
>
> -Louis
>
> On Wed, 26 Feb 2014, sabin khadka wrote:
>
>> Hi Doug,
>> I tried running autorecon2 after successful autorecon1, however it
>> crashed. I could not figure out why it crashed and how to fix it. Any
>> suggestions.
>> I've attached log file of autorecon2
>>
>> -Sabin
>>
>>
>>
>> On Tuesday, February 25, 2014 10:47 AM, Douglas Greve
>> <greve@nmr.mgh.harvard.edu> wrote:
>>
>> You did not run it all the way through (you stopped at autorecon2)
>> doug
>>
>>
>> On 2/25/14 9:00 AM, sabin khadka wrote:
>>
>> Thanks Doug. recon-all.log is attached herewith.
>>
>>
>>
>> On Monday, February 24, 2014 5:07 PM, Douglas N Greve
>> <greve@nmr.mgh.harvard.edu> wrote:
>>
>> are you sure it did not fail? Can you post the recon-all.log file to the
>> list?
>>
>>
>> On 02/24/2014 04:22 PM, sabin khadka wrote:
>> > Hi all,
>> > I ran recon-all -all and all the subjects finished without any error.
>> > However in few subjects directory, labels sub-directory only have
>> > lh.cortex.label and rh.cortex.label and not other label files like
>> > *.label and *.annot. Could anyone help me on how to fix this.
>> >
>> > -Sabin
>>
>> >
>> >
>> >
>> > _______________________________________________
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>>
>> --
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> greve@nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
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>

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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