No, but you can apply a rotation in tkmedit (though it might not rotate the surfaces or the aseg).

doug

Aaron Shmookler wrote:
Is it possible to reconstruct an MRI such that the images in tkmedit are perpendicular to the axis of a particular region such as in my ROI the temporal pole?  As I see them the tkmedit MRIs are oblique slices with the dorsal regions appearing caudally on the tksurfer (volumetric) images relative to the ventral regions.



_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 
Fax: 617-726-7422

In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting