1,4c1,4 < Mon Aug 19 17:08:53 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3 < /N/soft/cle4/freesurfer/5.1.0/bin/recon-all < -i /N/dc2/scratch/jdwest/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001 -s /N/dc2/scratch/jdwest/MCI3T_IU_FREESURFER51_QUA/10080_3 -all -hippo-subfields --- > Mon Aug 19 17:21:02 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3 > /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/bin/recon-all > -i /N/dc/projects/shenlab/subjects/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001 -s /N/dc/projects/shenlab/subjects/MCI3T_IU_FREESURFER51_QUA/10080_3 -all -hippo-subfields 6,8c6,8 < setenv SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 < Actual FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > setenv SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 > Actual FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 10c10 < Linux nid00048 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c #1 SMP Thu Nov 15 00:24:59 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux --- > Linux q0190 2.6.32-358.6.2.el6.x86_64 #1 SMP Tue May 14 15:48:21 EDT 2013 x86_64 x86_64 x86_64 GNU/Linux 13,16c13,16 < datasize unlimited < stacksize unlimited < coredumpsize 1 kbytes < memoryuse unlimited --- > datasize 12288000 kbytes > stacksize 10240 kbytes > coredumpsize 0 kbytes > memoryuse 12288000 kbytes 18c18 < descriptors 1024 --- > descriptors 32768 20c20 < maxproc unlimited --- > maxproc 128461 23,25c23,25 < Mem: 66178284 1394132 64784152 0 0 52980 < -/+ buffers/cache: 1341152 64837132 < Swap: 0 0 0 --- > Mem: 16466048 12491244 3974804 0 48352 10858668 > -/+ buffers/cache: 1584224 14881824 > Swap: 31455260 5069976 26385284 32c32 < ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:53-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 --- > ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:02-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 37c37 < ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:54-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 --- > ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:03-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 39,69c39,69 < Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37 < ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:54-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:54-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_normalize.c,v 1.73 2011/03/11 20:55:38 fischl Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:54-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_watershed.cpp,v 1.96 2011/03/16 21:23:49 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:55-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:55-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:55-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_label2label.c,v 1.40.2.1 2011/05/19 17:21:56 greve Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:55-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_em_register.c,v 1.84 2011/03/16 21:23:48 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:55-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_ca_normalize.c,v 1.52 2011/03/02 00:04:14 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:55-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_ca_register.c,v 1.78 2011/03/02 14:27:40 fischl Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:55-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_ca_label.c,v 1.96 2011/03/02 00:04:13 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:55-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:56-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_euler_number.c,v 1.8 2011/03/02 00:04:32 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_make_surfaces.c,v 1.127 2011/03/02 00:04:33 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:57-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:58-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:58-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_calc.c,v 1.37.2.4 2011/04/04 00:53:08 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 --- > Package MNI N3, version 1.10, compiled by nicks@kani (i686-pc-linux-gnu) on 2005-11-15 at 21:02:27 > ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:03-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:03-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_normalize.c,v 1.73 2011/03/11 20:55:38 fischl Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:04-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_watershed.cpp,v 1.96 2011/03/16 21:23:49 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:04-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:04-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:04-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_label2label.c,v 1.40.2.1 2011/05/19 17:21:56 greve Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:04-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_em_register.c,v 1.84 2011/03/16 21:23:48 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:05-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_ca_normalize.c,v 1.52 2011/03/02 00:04:14 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:05-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_ca_register.c,v 1.78 2011/03/02 14:27:40 fischl Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:05-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_ca_label.c,v 1.96 2011/03/02 00:04:13 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:05-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:05-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:06-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:06-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:06-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:06-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:06-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:06-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:07-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:11-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:11-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:11-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:12-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_euler_number.c,v 1.8 2011/03/02 00:04:32 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:13-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_make_surfaces.c,v 1.127 2011/03/02 00:04:33 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:13-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:14-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:14-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:15-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:15-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:16-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mris_calc.c,v 1.37.2.4 2011/04/04 00:53:08 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 72c72 < ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:58-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_robust_register.cpp,v 1.52 2011/03/16 21:23:49 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 --- > ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:16-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_robust_register.cpp,v 1.52 2011/03/16 21:23:49 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 75,79c75,79 < ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:58-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_robust_template.cpp,v 1.37 2011/03/02 00:04:24 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:58-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:58-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:58-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 < ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:08:59-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $ User: jdwest Machine: nid00048 Platform: Linux PlatformVersion: 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c CompilerName: GCC CompilerVersion: 30400 --- > ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:17-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_robust_template.cpp,v 1.37 2011/03/02 00:04:24 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:17-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 > ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2013/08/19-21:21:18-GMT BuildTimeStamp: May 22 2011 08:23:31 CVS: $Id: mri_segstats.c,v 1.75.2.2 2011/04/27 22:18:58 nicks Exp $ User: jdwest Machine: q0190 Platform: Linux PlatformVersion: 2.6.32-358.6.2.el6.x86_64 CompilerName: GCC CompilerVersion: 30400 81c81 < GCADIR /N/soft/cle4/freesurfer/5.1.0/average --- > GCADIR /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average 85c85 < GCSDIR /N/soft/cle4/freesurfer/5.1.0/average --- > GCSDIR /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average 88c88 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3 --- > /N/dc/projects/shenlab/subjects/10080_3 90c90 < mri_convert /N/dc2/scratch/jdwest/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001 /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig/001.mgz --- > mri_convert /N/dc/projects/shenlab/subjects/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001 /N/dc/projects/shenlab/subjects/10080_3/mri/orig/001.mgz 92c92 < mri_convert /N/dc2/scratch/jdwest/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001 /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig/001.mgz --- > mri_convert /N/dc/projects/shenlab/subjects/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001 /N/dc/projects/shenlab/subjects/10080_3/mri/orig/001.mgz 94c94 < reading from /N/dc2/scratch/jdwest/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001... --- > reading from /N/dc/projects/shenlab/subjects/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001... 96c96 < INFO: Found 162 files in /N/dc2/scratch/jdwest/MCI3T_IU_FREESURFER51_QUA/10080_3 --- > INFO: Found 162 files in /N/dc/projects/shenlab/subjects/MCI3T_IU_FREESURFER51_QUA/10080_3 113c113 < FileName /N/dc2/scratch/jdwest/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001 --- > FileName /N/dc/projects/shenlab/subjects/MCI3T_IU_FREESURFER51_QUA/10080_3/S2.001 156c156 < writing to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig/001.mgz... --- > writing to /N/dc/projects/shenlab/subjects/10080_3/mri/orig/001.mgz... 158c158 < #@# MotionCor Mon Aug 19 17:13:03 EDT 2013 --- > #@# MotionCor Mon Aug 19 17:24:38 EDT 2013 160c160 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig/001.mgz --- > /N/dc/projects/shenlab/subjects/10080_3/mri/orig/001.mgz 166c166 < cp /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig/001.mgz /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/rawavg.mgz --- > cp /N/dc/projects/shenlab/subjects/10080_3/mri/orig/001.mgz /N/dc/projects/shenlab/subjects/10080_3/mri/rawavg.mgz 168c168 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3 --- > /N/dc/projects/shenlab/subjects/10080_3 170c170 < mri_convert /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/rawavg.mgz /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig.mgz --conform --- > mri_convert /N/dc/projects/shenlab/subjects/10080_3/mri/rawavg.mgz /N/dc/projects/shenlab/subjects/10080_3/mri/orig.mgz --conform 172c172 < mri_convert /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/rawavg.mgz /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig.mgz --conform --- > mri_convert /N/dc/projects/shenlab/subjects/10080_3/mri/rawavg.mgz /N/dc/projects/shenlab/subjects/10080_3/mri/orig.mgz --conform 174c174 < reading from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/rawavg.mgz... --- > reading from /N/dc/projects/shenlab/subjects/10080_3/mri/rawavg.mgz... 184c184 < writing to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig.mgz... --- > writing to /N/dc/projects/shenlab/subjects/10080_3/mri/orig.mgz... 186c186 < mri_add_xform_to_header -c /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/transforms/talairach.xfm /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig.mgz /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/orig.mgz --- > mri_add_xform_to_header -c /N/dc/projects/shenlab/subjects/10080_3/mri/transforms/talairach.xfm /N/dc/projects/shenlab/subjects/10080_3/mri/orig.mgz /N/dc/projects/shenlab/subjects/10080_3/mri/orig.mgz 190,191c190,191 < #@# Talairach Mon Aug 19 17:13:22 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# Talairach Mon Aug 19 17:25:03 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 199,200c199,200 < #@# Talairach Failure Detection Mon Aug 19 17:14:58 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# Talairach Failure Detection Mon Aug 19 17:27:55 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 206c206 < awk -f /N/soft/cle4/freesurfer/5.1.0/bin/extract_talairach_avi_QA.awk /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/transforms/talairach_avi.log --- > awk -f /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/bin/extract_talairach_avi_QA.awk /N/dc/projects/shenlab/subjects/10080_3/mri/transforms/talairach_avi.log 211c211 < #@# Nu Intensity Correction Mon Aug 19 17:14:58 EDT 2013 --- > #@# Nu Intensity Correction Mon Aug 19 17:27:56 EDT 2013 215,216c215,216 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri < /N/soft/cle4/freesurfer/5.1.0/bin/mri_nu_correct.mni --- > /N/dc/projects/shenlab/subjects/10080_3/mri > /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/bin/mri_nu_correct.mni 220,221c220,221 < Linux nid00048 2.6.32.59-0.7.1_1.0401.6845-cray_gem_c #1 SMP Thu Nov 15 00:24:59 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux < Mon Aug 19 17:14:58 EDT 2013 --- > Linux q0190 2.6.32-358.6.2.el6.x86_64 #1 SMP Tue May 14 15:48:21 EDT 2013 x86_64 x86_64 x86_64 GNU/Linux > Mon Aug 19 17:27:56 EDT 2013 223,227c223,227 < Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37 < tmpdir is ./tmp.mri_nu_correct.mni.30768 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri < mri_convert orig.mgz ./tmp.mri_nu_correct.mni.30768/nu0.mnc -odt float < mri_convert orig.mgz ./tmp.mri_nu_correct.mni.30768/nu0.mnc -odt float --- > Package MNI N3, version 1.10, compiled by nicks@kani (i686-pc-linux-gnu) on 2005-11-15 at 21:02:27 > tmpdir is ./tmp.mri_nu_correct.mni.23031 > /N/dc/projects/shenlab/subjects/10080_3/mri > mri_convert orig.mgz ./tmp.mri_nu_correct.mni.23031/nu0.mnc -odt float > mri_convert orig.mgz ./tmp.mri_nu_correct.mni.23031/nu0.mnc -odt float 235c235 < writing to ./tmp.mri_nu_correct.mni.30768/nu0.mnc... --- > writing to ./tmp.mri_nu_correct.mni.23031/nu0.mnc... 238,241c238,241 < Iteration 1 Mon Aug 19 17:15:02 EDT 2013 < nu_correct -clobber ./tmp.mri_nu_correct.mni.30768/nu0.mnc ./tmp.mri_nu_correct.mni.30768/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.30768/0/ < [jdwest@nid00048:/N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/] [2013-08-19 17:15:02] running: < /N/soft/cle4/freesurfer/5.1.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.30768/0/ ./tmp.mri_nu_correct.mni.30768/nu0.mnc ./tmp.mri_nu_correct.mni.30768/nu1.imp --- > Iteration 1 Mon Aug 19 17:28:03 EDT 2013 > nu_correct -clobber ./tmp.mri_nu_correct.mni.23031/nu0.mnc ./tmp.mri_nu_correct.mni.23031/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.23031/0/ > [jdwest@q0190:/N/dc/projects/shenlab/subjects/10080_3/mri/] [2013-08-19 17:28:04] running: > /N/soft/linux-rhel4_AS-x86_64/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.23031/0/ ./tmp.mri_nu_correct.mni.23031/nu0.mnc ./tmp.mri_nu_correct.mni.23031/nu1.imp 243a244 > Not implemented yet in cache_volume_range_has_changed() 244a246 > Not implemented yet in cache_volume_range_has_changed() 245a248 > Not implemented yet in cache_volume_range_has_changed() 246a250 > Not implemented yet in cache_volume_range_has_changed() 247a252 > Not implemented yet in cache_volume_range_has_changed() 248a254 > Not implemented yet in cache_volume_range_has_changed() 249a256 > Not implemented yet in cache_volume_range_has_changed() 250a258 > Not implemented yet in cache_volume_range_has_changed() 251a260 > Not implemented yet in cache_volume_range_has_changed() 252a262 > Not implemented yet in cache_volume_range_has_changed() 253a264 > Not implemented yet in cache_volume_range_has_changed() 254a266 > Not implemented yet in cache_volume_range_has_changed() 255a268 > Not implemented yet in cache_volume_range_has_changed() 256a270 > Not implemented yet in cache_volume_range_has_changed() 257a272 > Not implemented yet in cache_volume_range_has_changed() 258a274 > Not implemented yet in cache_volume_range_has_changed() 259a276 > Not implemented yet in cache_volume_range_has_changed() 260a278 > Not implemented yet in cache_volume_range_has_changed() 261a280 > Not implemented yet in cache_volume_range_has_changed() 262a282 > Not implemented yet in cache_volume_range_has_changed() 263a284 > Not implemented yet in cache_volume_range_has_changed() 264a286 > Not implemented yet in cache_volume_range_has_changed() 265a288 > Not implemented yet in cache_volume_range_has_changed() 266a290 > Not implemented yet in cache_volume_range_has_changed() 267a292 > Not implemented yet in cache_volume_range_has_changed() 268a294 > Not implemented yet in cache_volume_range_has_changed() 269a296 > Not implemented yet in cache_volume_range_has_changed() 270a298 > Not implemented yet in cache_volume_range_has_changed() 271a300 > Not implemented yet in cache_volume_range_has_changed() 272a302 > Not implemented yet in cache_volume_range_has_changed() 273a304 > Not implemented yet in cache_volume_range_has_changed() 274a306 > Not implemented yet in cache_volume_range_has_changed() 275a308 > Not implemented yet in cache_volume_range_has_changed() 276a310 > Not implemented yet in cache_volume_range_has_changed() 277a312 > Not implemented yet in cache_volume_range_has_changed() 280,281c315,316 < [jdwest@nid00048:/N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/] [2013-08-19 17:15:44] running: < /N/soft/cle4/freesurfer/5.1.0/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.30768/nu0.mnc ./tmp.mri_nu_correct.mni.30768/0//template.mnc --- > [jdwest@q0190:/N/dc/projects/shenlab/subjects/10080_3/mri/] [2013-08-19 17:29:35] running: > /N/soft/linux-rhel4_AS-x86_64/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.23031/nu0.mnc ./tmp.mri_nu_correct.mni.23031/0//template.mnc 283a319 > Not implemented yet in cache_volume_range_has_changed() 288,291c324,327 < Iteration 2 Mon Aug 19 17:15:59 EDT 2013 < nu_correct -clobber ./tmp.mri_nu_correct.mni.30768/nu1.mnc ./tmp.mri_nu_correct.mni.30768/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.30768/1/ < [jdwest@nid00048:/N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/] [2013-08-19 17:16:00] running: < /N/soft/cle4/freesurfer/5.1.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.30768/1/ ./tmp.mri_nu_correct.mni.30768/nu1.mnc ./tmp.mri_nu_correct.mni.30768/nu2.imp --- > Iteration 2 Mon Aug 19 17:30:34 EDT 2013 > nu_correct -clobber ./tmp.mri_nu_correct.mni.23031/nu1.mnc ./tmp.mri_nu_correct.mni.23031/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.23031/1/ > [jdwest@q0190:/N/dc/projects/shenlab/subjects/10080_3/mri/] [2013-08-19 17:30:35] running: > /N/soft/linux-rhel4_AS-x86_64/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.23031/1/ ./tmp.mri_nu_correct.mni.23031/nu1.mnc ./tmp.mri_nu_correct.mni.23031/nu2.imp 293a330 > Not implemented yet in cache_volume_range_has_changed() 294a332 > Not implemented yet in cache_volume_range_has_changed() 295a334 > Not implemented yet in cache_volume_range_has_changed() 296a336 > Not implemented yet in cache_volume_range_has_changed() 297a338 > Not implemented yet in cache_volume_range_has_changed() 298a340 > Not implemented yet in cache_volume_range_has_changed() 299a342 > Not implemented yet in cache_volume_range_has_changed() 300a344 > Not implemented yet in cache_volume_range_has_changed() 301a346 > Not implemented yet in cache_volume_range_has_changed() 302a348 > Not implemented yet in cache_volume_range_has_changed() 303a350 > Not implemented yet in cache_volume_range_has_changed() 304a352 > Not implemented yet in cache_volume_range_has_changed() 305a354 > Not implemented yet in cache_volume_range_has_changed() 306a356 > Not implemented yet in cache_volume_range_has_changed() 307a358 > Not implemented yet in cache_volume_range_has_changed() 308a360 > Not implemented yet in cache_volume_range_has_changed() 309a362 > Not implemented yet in cache_volume_range_has_changed() 310a364 > Not implemented yet in cache_volume_range_has_changed() 311a366 > Not implemented yet in cache_volume_range_has_changed() 312a368 > Not implemented yet in cache_volume_range_has_changed() 313a370 > Not implemented yet in cache_volume_range_has_changed() 316,317c373,374 < [jdwest@nid00048:/N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/] [2013-08-19 17:16:26] running: < /N/soft/cle4/freesurfer/5.1.0/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.30768/nu1.mnc ./tmp.mri_nu_correct.mni.30768/1//template.mnc --- > [jdwest@q0190:/N/dc/projects/shenlab/subjects/10080_3/mri/] [2013-08-19 17:31:34] running: > /N/soft/linux-rhel4_AS-x86_64/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.23031/nu1.mnc ./tmp.mri_nu_correct.mni.23031/1//template.mnc 319a377 > Not implemented yet in cache_volume_range_has_changed() 324c382 < mri_binarize --i ./tmp.mri_nu_correct.mni.30768/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.30768/ones.mgz --- > mri_binarize --i ./tmp.mri_nu_correct.mni.23031/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.23031/ones.mgz 327,328c385,386 < cwd /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri < cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.30768/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.30768/ones.mgz --- > cwd /N/dc/projects/shenlab/subjects/10080_3/mri > cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.23031/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.23031/ones.mgz 330c388 < hostname nid00048 --- > hostname q0190 334c392 < input ./tmp.mri_nu_correct.mni.30768/nu2.mnc --- > input ./tmp.mri_nu_correct.mni.23031/nu2.mnc 338c396 < output ./tmp.mri_nu_correct.mni.30768/ones.mgz --- > output ./tmp.mri_nu_correct.mni.23031/ones.mgz 348c406 < mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.30768/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.30768/sum.junk --avgwf ./tmp.mri_nu_correct.mni.30768/input.mean.dat --- > mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.23031/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.23031/sum.junk --avgwf ./tmp.mri_nu_correct.mni.23031/input.mean.dat 352c410 < cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.30768/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.30768/sum.junk --avgwf ./tmp.mri_nu_correct.mni.30768/input.mean.dat --- > cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.23031/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.23031/sum.junk --avgwf ./tmp.mri_nu_correct.mni.23031/input.mean.dat 354c412 < hostname nid00048 --- > hostname q0190 357c415 < Loading ./tmp.mri_nu_correct.mni.30768/ones.mgz --- > Loading ./tmp.mri_nu_correct.mni.23031/ones.mgz 368,369c426,427 < Writing to ./tmp.mri_nu_correct.mni.30768/input.mean.dat < mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.30768/ones.mgz --i ./tmp.mri_nu_correct.mni.30768/nu2.mnc --sum ./tmp.mri_nu_correct.mni.30768/sum.junk --avgwf ./tmp.mri_nu_correct.mni.30768/output.mean.dat --- > Writing to ./tmp.mri_nu_correct.mni.23031/input.mean.dat > mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.23031/ones.mgz --i ./tmp.mri_nu_correct.mni.23031/nu2.mnc --sum ./tmp.mri_nu_correct.mni.23031/sum.junk --avgwf ./tmp.mri_nu_correct.mni.23031/output.mean.dat 373c431 < cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.30768/ones.mgz --i ./tmp.mri_nu_correct.mni.30768/nu2.mnc --sum ./tmp.mri_nu_correct.mni.30768/sum.junk --avgwf ./tmp.mri_nu_correct.mni.30768/output.mean.dat --- > cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.23031/ones.mgz --i ./tmp.mri_nu_correct.mni.23031/nu2.mnc --sum ./tmp.mri_nu_correct.mni.23031/sum.junk --avgwf ./tmp.mri_nu_correct.mni.23031/output.mean.dat 375c433 < hostname nid00048 --- > hostname q0190 378,379c436,437 < Loading ./tmp.mri_nu_correct.mni.30768/ones.mgz < Loading ./tmp.mri_nu_correct.mni.30768/nu2.mnc --- > Loading ./tmp.mri_nu_correct.mni.23031/ones.mgz > Loading ./tmp.mri_nu_correct.mni.23031/nu2.mnc 389,393c447,451 < Writing to ./tmp.mri_nu_correct.mni.30768/output.mean.dat < mris_calc -o ./tmp.mri_nu_correct.mni.30768/nu2.mnc ./tmp.mri_nu_correct.mni.30768/nu2.mnc mul 1.08792318003877314505 < Saving result to './tmp.mri_nu_correct.mni.30768/nu2.mnc' (type = MINC ) [ ok ] < mri_convert ./tmp.mri_nu_correct.mni.30768/nu2.mnc nu.mgz --like orig.mgz < mri_convert ./tmp.mri_nu_correct.mni.30768/nu2.mnc nu.mgz --like orig.mgz --- > Writing to ./tmp.mri_nu_correct.mni.23031/output.mean.dat > mris_calc -o ./tmp.mri_nu_correct.mni.23031/nu2.mnc ./tmp.mri_nu_correct.mni.23031/nu2.mnc mul 1.08792318003877314505 > Saving result to './tmp.mri_nu_correct.mni.23031/nu2.mnc' (type = MINC ) [ ok ] > mri_convert ./tmp.mri_nu_correct.mni.23031/nu2.mnc nu.mgz --like orig.mgz > mri_convert ./tmp.mri_nu_correct.mni.23031/nu2.mnc nu.mgz --like orig.mgz 395c453 < reading from ./tmp.mri_nu_correct.mni.30768/nu2.mnc... --- > reading from ./tmp.mri_nu_correct.mni.23031/nu2.mnc... 403c461 < type change took 0 minutes and 14 seconds. --- > type change took 0 minutes and 16 seconds. 407c465 < Mon Aug 19 17:17:48 EDT 2013 --- > Mon Aug 19 17:34:29 EDT 2013 410,411c468,469 < #@# Intensity Normalization Mon Aug 19 17:17:48 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# Intensity Normalization Mon Aug 19 17:34:29 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 433c491 < 3D bias adjustment took 4 minutes and 4 seconds. --- > 3D bias adjustment took 3 minutes and 6 seconds. 445,446c503,504 < #@# Skull Stripping Mon Aug 19 17:21:54 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# Skull Stripping Mon Aug 19 17:37:36 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 448c506 < mri_em_register -skull nu.mgz /N/soft/cle4/freesurfer/5.1.0/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta --- > mri_em_register -skull nu.mgz /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta 453c511 < reading '/N/soft/cle4/freesurfer/5.1.0/average/RB_all_withskull_2008-03-26.gca'... --- > reading '/N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_withskull_2008-03-26.gca'... 576c634 < registration took 19 minutes and 16 seconds. --- > registration took 18 minutes and 34 seconds. 578c636 < mri_watershed -T1 -brain_atlas /N/soft/cle4/freesurfer/5.1.0/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz --- > mri_watershed -T1 -brain_atlas /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz 606,607c664,665 < main basin size=22208239350 voxels, voxel volume =1.000 < = 22208239350 mmm3 = 22208239.616 cm3 --- > main basin size=22667431830 voxels, voxel volume =1.000 > = 22667431830 mmm3 = 22667431.936 cm3 684,685c742,743 < #@# EM Registration Mon Aug 19 17:41:54 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# EM Registration Mon Aug 19 17:56:58 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 687c745 < mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca transforms/talairach.lta --- > mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca transforms/talairach.lta 693c751 < reading '/N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca'... --- > reading '/N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca'... 849c907 < registration took 32 minutes and 34 seconds. --- > registration took 30 minutes and 48 seconds. 851,852c909,910 < #@# CA Normalize Mon Aug 19 18:14:28 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# CA Normalize Mon Aug 19 18:27:46 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 854c912 < mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz --- > mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz 859c917 < reading atlas from '/N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca'... --- > reading atlas from '/N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca'... 967c1025 < normalization took 2 minutes and 27 seconds. --- > normalization took 2 minutes and 19 seconds. 969,970c1027,1028 < #@# CA Reg Mon Aug 19 18:16:56 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# CA Reg Mon Aug 19 18:30:05 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 972c1030 < mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca transforms/talairach.m3z --- > mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca transforms/talairach.m3z 984c1042 < reading GCA '/N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca'... --- > reading GCA '/N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca'... 997c1055 < gcamFindOptimalTimeStep: Complete in 46905.648 ms --- > gcamFindOptimalTimeStep: Complete in 60473.676 ms 999c1057 < gcamFindOptimalTimeStep: Complete in 53113.312 ms --- > gcamFindOptimalTimeStep: Complete in 61283.730 ms 1001c1059 < gcamFindOptimalTimeStep: Complete in 54004.434 ms --- > gcamFindOptimalTimeStep: Complete in 63351.344 ms 1003c1061 < gcamFindOptimalTimeStep: Complete in 54915.883 ms --- > gcamFindOptimalTimeStep: Complete in 62294.773 ms 1005c1063 < gcamFindOptimalTimeStep: Complete in 58094.258 ms --- > gcamFindOptimalTimeStep: Complete in 86239.148 ms 1007c1065 < gcamFindOptimalTimeStep: Complete in 58229.293 ms --- > gcamFindOptimalTimeStep: Complete in 94939.961 ms 1013c1071 < gcamFindOptimalTimeStep: Complete in 62362.715 ms --- > gcamFindOptimalTimeStep: Complete in 82702.898 ms 1015c1073 < gcamFindOptimalTimeStep: Complete in 62644.512 ms --- > gcamFindOptimalTimeStep: Complete in 105890.414 ms 1017c1075 < gcamFindOptimalTimeStep: Complete in 54795.047 ms --- > gcamFindOptimalTimeStep: Complete in 104673.016 ms 1019c1077 < gcamFindOptimalTimeStep: Complete in 55867.652 ms --- > gcamFindOptimalTimeStep: Complete in 96480.781 ms 1026c1084 < gcamFindOptimalTimeStep: Complete in 55444.926 ms --- > gcamFindOptimalTimeStep: Complete in 86900.617 ms 1028c1086 < gcamFindOptimalTimeStep: Complete in 53855.695 ms --- > gcamFindOptimalTimeStep: Complete in 85426.023 ms 1030c1088 < gcamFindOptimalTimeStep: Complete in 52337.695 ms --- > gcamFindOptimalTimeStep: Complete in 92148.828 ms 1032c1090 < gcamFindOptimalTimeStep: Complete in 53425.789 ms --- > gcamFindOptimalTimeStep: Complete in 93896.891 ms 1034c1092 < gcamFindOptimalTimeStep: Complete in 52529.500 ms --- > gcamFindOptimalTimeStep: Complete in 90553.031 ms 1036c1094 < gcamFindOptimalTimeStep: Complete in 53552.656 ms --- > gcamFindOptimalTimeStep: Complete in 74895.789 ms 1038c1096 < gcamFindOptimalTimeStep: Complete in 56096.645 ms --- > gcamFindOptimalTimeStep: Complete in 79996.844 ms 1040c1098 < gcamFindOptimalTimeStep: Complete in 51981.766 ms --- > gcamFindOptimalTimeStep: Complete in 75027.336 ms 1042c1100 < gcamFindOptimalTimeStep: Complete in 54926.637 ms --- > gcamFindOptimalTimeStep: Complete in 81586.812 ms 1044c1102 < gcamFindOptimalTimeStep: Complete in 55546.242 ms --- > gcamFindOptimalTimeStep: Complete in 76976.734 ms 1046c1104 < gcamFindOptimalTimeStep: Complete in 52644.566 ms --- > gcamFindOptimalTimeStep: Complete in 78615.867 ms 1048c1106 < gcamFindOptimalTimeStep: Complete in 53945.453 ms --- > gcamFindOptimalTimeStep: Complete in 80251.039 ms 1050c1108 < gcamFindOptimalTimeStep: Complete in 53368.984 ms --- > gcamFindOptimalTimeStep: Complete in 79314.906 ms 1052c1110 < gcamFindOptimalTimeStep: Complete in 53146.617 ms --- > gcamFindOptimalTimeStep: Complete in 79923.672 ms 1054c1112 < gcamFindOptimalTimeStep: Complete in 52756.820 ms --- > gcamFindOptimalTimeStep: Complete in 78585.531 ms 1056c1114 < gcamFindOptimalTimeStep: Complete in 53313.062 ms --- > gcamFindOptimalTimeStep: Complete in 82816.789 ms 1067c1125 < gcamFindOptimalTimeStep: Complete in 58835.840 ms --- > gcamFindOptimalTimeStep: Complete in 101737.664 ms 1071c1129 < gcamFindOptimalTimeStep: Complete in 67433.344 ms --- > gcamFindOptimalTimeStep: Complete in 112165.297 ms 1076c1134 < gcamFindOptimalTimeStep: Complete in 58219.117 ms --- > gcamFindOptimalTimeStep: Complete in 91035.820 ms 1078c1136 < gcamFindOptimalTimeStep: Complete in 60765.781 ms --- > gcamFindOptimalTimeStep: Complete in 95699.438 ms 1080c1138 < gcamFindOptimalTimeStep: Complete in 59588.031 ms --- > gcamFindOptimalTimeStep: Complete in 106890.977 ms 1082c1140 < gcamFindOptimalTimeStep: Complete in 61393.730 ms --- > gcamFindOptimalTimeStep: Complete in 103492.023 ms 1084c1142 < gcamFindOptimalTimeStep: Complete in 61311.906 ms --- > gcamFindOptimalTimeStep: Complete in 101418.391 ms 1090c1148 < gcamFindOptimalTimeStep: Complete in 63296.484 ms --- > gcamFindOptimalTimeStep: Complete in 96089.297 ms 1095c1153 < gcamFindOptimalTimeStep: Complete in 60599.949 ms --- > gcamFindOptimalTimeStep: Complete in 90272.570 ms 1097c1155 < gcamFindOptimalTimeStep: Complete in 62462.699 ms --- > gcamFindOptimalTimeStep: Complete in 88995.938 ms 1102c1160 < gcamFindOptimalTimeStep: Complete in 59202.996 ms --- > gcamFindOptimalTimeStep: Complete in 87750.781 ms 1107c1165 < gcamFindOptimalTimeStep: Complete in 59869.180 ms --- > gcamFindOptimalTimeStep: Complete in 88772.023 ms 1109c1167 < gcamFindOptimalTimeStep: Complete in 56690.945 ms --- > gcamFindOptimalTimeStep: Complete in 101024.930 ms 1111c1169 < gcamFindOptimalTimeStep: Complete in 53608.578 ms --- > 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Complete in 81410.352 ms 1381c1439 < gcamFindOptimalTimeStep: Complete in 51340.023 ms --- > gcamFindOptimalTimeStep: Complete in 76990.602 ms 1383c1441 < gcamFindOptimalTimeStep: Complete in 57227.984 ms --- > gcamFindOptimalTimeStep: Complete in 81079.195 ms 1385c1443 < gcamFindOptimalTimeStep: Complete in 59293.258 ms --- > gcamFindOptimalTimeStep: Complete in 82484.906 ms 1387c1445 < gcamFindOptimalTimeStep: Complete in 53444.648 ms --- > gcamFindOptimalTimeStep: Complete in 74225.812 ms 1389c1447 < gcamFindOptimalTimeStep: Complete in 51581.199 ms --- > gcamFindOptimalTimeStep: Complete in 76996.258 ms 1391c1449 < gcamFindOptimalTimeStep: Complete in 52019.773 ms --- > gcamFindOptimalTimeStep: Complete in 76825.125 ms 1393c1451 < gcamFindOptimalTimeStep: Complete in 50168.520 ms --- > gcamFindOptimalTimeStep: Complete in 78090.867 ms 1395c1453 < gcamFindOptimalTimeStep: Complete in 51727.766 ms --- > gcamFindOptimalTimeStep: Complete in 74056.188 ms 1397c1455 < gcamFindOptimalTimeStep: Complete in 51043.887 ms --- > gcamFindOptimalTimeStep: Complete in 75414.633 ms 1399c1457 < gcamFindOptimalTimeStep: Complete in 51483.523 ms --- > gcamFindOptimalTimeStep: Complete in 74550.734 ms 1401c1459 < gcamFindOptimalTimeStep: Complete in 50542.383 ms --- > gcamFindOptimalTimeStep: Complete in 73290.695 ms 1403c1461 < gcamFindOptimalTimeStep: Complete in 51699.344 ms --- > gcamFindOptimalTimeStep: Complete in 75171.008 ms 1405c1463 < gcamFindOptimalTimeStep: Complete in 55567.227 ms --- > gcamFindOptimalTimeStep: Complete in 81774.406 ms 1407c1465 < gcamFindOptimalTimeStep: Complete in 55681.656 ms --- > gcamFindOptimalTimeStep: Complete in 80776.039 ms 1409c1467 < gcamFindOptimalTimeStep: Complete in 52249.840 ms --- > gcamFindOptimalTimeStep: Complete in 76104.172 ms 1411c1469 < gcamFindOptimalTimeStep: Complete in 51941.305 ms --- > gcamFindOptimalTimeStep: Complete in 77521.930 ms 1413c1471 < gcamFindOptimalTimeStep: Complete in 50408.707 ms --- > 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gcamFindOptimalTimeStep: Complete in 85352.219 ms --- > gcamFindOptimalTimeStep: Complete in 120794.516 ms 1769c1827 < gcamFindOptimalTimeStep: Complete in 27577.539 ms --- > gcamFindOptimalTimeStep: Complete in 69441.867 ms 1771c1829 < gcamFindOptimalTimeStep: Complete in 28285.525 ms --- > gcamFindOptimalTimeStep: Complete in 68559.352 ms 1777c1835 < gcamFindOptimalTimeStep: Complete in 29185.512 ms --- > gcamFindOptimalTimeStep: Complete in 70719.188 ms 1779c1837 < gcamFindOptimalTimeStep: Complete in 30319.701 ms --- > gcamFindOptimalTimeStep: Complete in 71127.773 ms 1785c1843 < gcamFindOptimalTimeStep: Complete in 27817.701 ms --- > gcamFindOptimalTimeStep: Complete in 67207.523 ms 1787c1845 < gcamFindOptimalTimeStep: Complete in 28912.561 ms --- > gcamFindOptimalTimeStep: Complete in 66910.836 ms 1789c1847 < gcamFindOptimalTimeStep: Complete in 31796.645 ms --- > gcamFindOptimalTimeStep: Complete in 69345.336 ms 1791c1849 < gcamFindOptimalTimeStep: Complete in 30645.010 ms --- > 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gcamFindOptimalTimeStep: Complete in 27171.020 ms --- > gcamFindOptimalTimeStep: Complete in 69601.758 ms 1941c1999 < gcamFindOptimalTimeStep: Complete in 26033.959 ms --- > gcamFindOptimalTimeStep: Complete in 70054.031 ms 1943c2001 < gcamFindOptimalTimeStep: Complete in 28021.395 ms --- > gcamFindOptimalTimeStep: Complete in 73223.625 ms 1945c2003 < gcamFindOptimalTimeStep: Complete in 27122.170 ms --- > gcamFindOptimalTimeStep: Complete in 67445.430 ms 1951c2009 < gcamFindOptimalTimeStep: Complete in 25432.215 ms --- > gcamFindOptimalTimeStep: Complete in 76823.969 ms 1953c2011 < gcamFindOptimalTimeStep: Complete in 27513.258 ms --- > gcamFindOptimalTimeStep: Complete in 79662.109 ms 1955c2013 < gcamFindOptimalTimeStep: Complete in 27384.037 ms --- > gcamFindOptimalTimeStep: Complete in 80045.797 ms 1957c2015 < gcamFindOptimalTimeStep: Complete in 27530.178 ms --- > gcamFindOptimalTimeStep: Complete in 81398.898 ms 1963c2021 < gcamFindOptimalTimeStep: Complete in 24048.680 ms --- > gcamFindOptimalTimeStep: Complete in 75560.367 ms 1965c2023 < gcamFindOptimalTimeStep: Complete in 24131.625 ms --- > gcamFindOptimalTimeStep: Complete in 74269.609 ms 1967c2025 < gcamFindOptimalTimeStep: Complete in 25109.689 ms --- > gcamFindOptimalTimeStep: Complete in 75761.172 ms 1969c2027 < gcamFindOptimalTimeStep: Complete in 25276.803 ms --- > gcamFindOptimalTimeStep: Complete in 80229.867 ms 1971c2029 < gcamFindOptimalTimeStep: Complete in 24351.170 ms --- > gcamFindOptimalTimeStep: Complete in 77542.133 ms 1973c2031 < gcamFindOptimalTimeStep: Complete in 26155.977 ms --- > gcamFindOptimalTimeStep: Complete in 78869.977 ms 1979c2037 < gcamFindOptimalTimeStep: Complete in 27599.145 ms --- > gcamFindOptimalTimeStep: Complete in 77153.914 ms 1981c2039 < gcamFindOptimalTimeStep: Complete in 28088.422 ms --- > gcamFindOptimalTimeStep: Complete in 81556.867 ms 1983c2041 < gcamFindOptimalTimeStep: Complete in 29217.742 ms --- > gcamFindOptimalTimeStep: Complete in 80984.680 ms 1985c2043 < gcamFindOptimalTimeStep: Complete in 27664.043 ms --- > gcamFindOptimalTimeStep: Complete in 80654.617 ms 1987c2045 < gcamFindOptimalTimeStep: Complete in 28649.672 ms --- > gcamFindOptimalTimeStep: Complete in 81118.312 ms 1990c2048 < gcamFindOptimalTimeStep: Complete in 87876.664 ms --- > gcamFindOptimalTimeStep: Complete in 130743.547 ms 1994c2052 < gcamFindOptimalTimeStep: Complete in 28597.537 ms --- > gcamFindOptimalTimeStep: Complete in 73396.227 ms 1996c2054 < gcamFindOptimalTimeStep: Complete in 27726.992 ms --- > gcamFindOptimalTimeStep: Complete in 58299.477 ms 1998c2056 < gcamFindOptimalTimeStep: Complete in 31503.936 ms --- > gcamFindOptimalTimeStep: Complete in 66729.906 ms 2000c2058 < gcamFindOptimalTimeStep: Complete in 31712.725 ms --- > gcamFindOptimalTimeStep: Complete in 75798.336 ms 2003c2061 < gcamFindOptimalTimeStep: Complete in 92655.227 ms --- > gcamFindOptimalTimeStep: Complete in 138107.203 ms 2007c2065 < gcamFindOptimalTimeStep: Complete in 32318.312 ms --- > gcamFindOptimalTimeStep: Complete in 74534.242 ms 2009c2067 < gcamFindOptimalTimeStep: Complete in 30849.389 ms --- > gcamFindOptimalTimeStep: Complete in 74295.422 ms 2011c2069 < gcamFindOptimalTimeStep: Complete in 33488.312 ms --- > gcamFindOptimalTimeStep: Complete in 76938.938 ms 2013c2071 < gcamFindOptimalTimeStep: Complete in 34033.383 ms --- > gcamFindOptimalTimeStep: Complete in 76705.008 ms 2015c2073 < gcamFindOptimalTimeStep: Complete in 33811.109 ms --- > gcamFindOptimalTimeStep: Complete in 77801.445 ms 2018c2076 < gcamFindOptimalTimeStep: Complete in 88341.969 ms --- > gcamFindOptimalTimeStep: Complete in 138879.344 ms 2022c2080 < gcamFindOptimalTimeStep: Complete in 28431.031 ms --- > gcamFindOptimalTimeStep: Complete in 78332.258 ms 2024c2082 < gcamFindOptimalTimeStep: Complete in 29158.848 ms --- > gcamFindOptimalTimeStep: Complete in 78175.023 ms 2026c2084 < gcamFindOptimalTimeStep: Complete in 31432.377 ms --- > gcamFindOptimalTimeStep: Complete in 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Complete in 63907.289 ms 2070c2128 < gcamFindOptimalTimeStep: Complete in 36188.719 ms --- > gcamFindOptimalTimeStep: Complete in 70550.312 ms 2076c2134 < gcamFindOptimalTimeStep: Complete in 28937.730 ms --- > gcamFindOptimalTimeStep: Complete in 55852.574 ms 2078c2136 < gcamFindOptimalTimeStep: Complete in 30412.102 ms --- > gcamFindOptimalTimeStep: Complete in 54641.914 ms 2080c2138 < gcamFindOptimalTimeStep: Complete in 32719.402 ms --- > gcamFindOptimalTimeStep: Complete in 57076.840 ms 2082c2140 < gcamFindOptimalTimeStep: Complete in 25894.307 ms --- > gcamFindOptimalTimeStep: Complete in 54816.191 ms 2084c2142 < gcamFindOptimalTimeStep: Complete in 29233.088 ms --- > gcamFindOptimalTimeStep: Complete in 56181.180 ms 2086c2144 < gcamFindOptimalTimeStep: Complete in 26199.375 ms --- > gcamFindOptimalTimeStep: Complete in 54433.605 ms 2088c2146 < gcamFindOptimalTimeStep: Complete in 29260.564 ms --- > gcamFindOptimalTimeStep: Complete in 59087.074 ms 2094c2152 < gcamFindOptimalTimeStep: Complete in 25495.371 ms --- > gcamFindOptimalTimeStep: Complete in 52942.855 ms 2096c2154 < gcamFindOptimalTimeStep: Complete in 24879.627 ms --- > gcamFindOptimalTimeStep: Complete in 52190.344 ms 2098c2156 < gcamFindOptimalTimeStep: Complete in 26402.973 ms --- > gcamFindOptimalTimeStep: Complete in 54879.906 ms 2100c2158 < gcamFindOptimalTimeStep: Complete in 26717.154 ms --- > gcamFindOptimalTimeStep: Complete in 54577.531 ms 2102c2160 < gcamFindOptimalTimeStep: Complete in 26044.748 ms --- > gcamFindOptimalTimeStep: Complete in 55445.992 ms 2104c2162 < gcamFindOptimalTimeStep: Complete in 27740.590 ms --- > gcamFindOptimalTimeStep: Complete in 57573.059 ms 2106c2164 < gcamFindOptimalTimeStep: Complete in 26804.506 ms --- > gcamFindOptimalTimeStep: Complete in 55398.875 ms 2111c2169 < gcamFindOptimalTimeStep: Complete in 77286.133 ms --- > gcamFindOptimalTimeStep: Complete in 95001.359 ms 2115c2173 < gcamFindOptimalTimeStep: Complete in 25676.668 ms --- > 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gcamFindOptimalTimeStep: Complete in 57268.090 ms 2273c2331 < gcamFindOptimalTimeStep: Complete in 26586.764 ms --- > gcamFindOptimalTimeStep: Complete in 54414.980 ms 2275c2333 < gcamFindOptimalTimeStep: Complete in 27599.930 ms --- > gcamFindOptimalTimeStep: Complete in 58831.062 ms 2277c2335 < gcamFindOptimalTimeStep: Complete in 28269.020 ms --- > gcamFindOptimalTimeStep: Complete in 76908.359 ms 2283c2341 < gcamFindOptimalTimeStep: Complete in 28011.223 ms --- > gcamFindOptimalTimeStep: Complete in 58440.609 ms 2285c2343 < gcamFindOptimalTimeStep: Complete in 27308.996 ms --- > gcamFindOptimalTimeStep: Complete in 57365.301 ms 2287c2345 < gcamFindOptimalTimeStep: Complete in 29237.100 ms --- > gcamFindOptimalTimeStep: Complete in 65826.867 ms 2289c2347 < gcamFindOptimalTimeStep: Complete in 28076.648 ms --- > gcamFindOptimalTimeStep: Complete in 65512.961 ms 2291c2349 < gcamFindOptimalTimeStep: Complete in 25781.883 ms --- > gcamFindOptimalTimeStep: Complete in 53020.566 ms 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Complete in 65294.934 ms 2383c2441 < gcamFindOptimalTimeStep: Complete in 22295.807 ms --- > gcamFindOptimalTimeStep: Complete in 66390.469 ms 2385c2443 < gcamFindOptimalTimeStep: Complete in 20868.688 ms --- > gcamFindOptimalTimeStep: Complete in 54610.832 ms 2387c2445 < gcamFindOptimalTimeStep: Complete in 21616.432 ms --- > gcamFindOptimalTimeStep: Complete in 51968.598 ms 2389c2447 < gcamFindOptimalTimeStep: Complete in 21761.189 ms --- > gcamFindOptimalTimeStep: Complete in 63840.777 ms 2391c2449 < gcamFindOptimalTimeStep: Complete in 22737.316 ms --- > gcamFindOptimalTimeStep: Complete in 70814.617 ms 2393c2451 < gcamFindOptimalTimeStep: Complete in 22671.061 ms --- > gcamFindOptimalTimeStep: Complete in 72285.828 ms 2399c2457 < gcamFindOptimalTimeStep: Complete in 69870.570 ms --- > gcamFindOptimalTimeStep: Complete in 129882.484 ms 2403c2461 < gcamFindOptimalTimeStep: Complete in 28158.330 ms --- > gcamFindOptimalTimeStep: Complete in 58708.988 ms 2405c2463 < gcamFindOptimalTimeStep: Complete in 25259.582 ms --- > gcamFindOptimalTimeStep: Complete in 52635.207 ms 2407c2465 < gcamFindOptimalTimeStep: Complete in 28577.412 ms --- > gcamFindOptimalTimeStep: Complete in 53905.418 ms 2409c2467 < gcamFindOptimalTimeStep: Complete in 27200.221 ms --- > gcamFindOptimalTimeStep: Complete in 52261.312 ms 2411c2469 < gcamFindOptimalTimeStep: Complete in 26497.277 ms --- > gcamFindOptimalTimeStep: Complete in 47341.641 ms 2413c2471 < gcamFindOptimalTimeStep: Complete in 26179.199 ms --- > gcamFindOptimalTimeStep: Complete in 51645.516 ms 2415c2473 < gcamFindOptimalTimeStep: Complete in 24796.453 ms --- > gcamFindOptimalTimeStep: Complete in 56340.074 ms 2417c2475 < gcamFindOptimalTimeStep: Complete in 24067.266 ms --- > gcamFindOptimalTimeStep: Complete in 55998.172 ms 2420c2478 < gcamFindOptimalTimeStep: Complete in 72774.945 ms --- > gcamFindOptimalTimeStep: Complete in 91179.438 ms 2424c2482 < gcamFindOptimalTimeStep: Complete in 20698.188 ms --- > 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gcamFindOptimalTimeStep: Complete in 108060.492 ms 2785c2843 < gcamFindOptimalTimeStep: Complete in 24703.432 ms --- > gcamFindOptimalTimeStep: Complete in 62577.824 ms 2792c2850 < gcamFindOptimalTimeStep: Complete in 89350.547 ms --- > gcamFindOptimalTimeStep: Complete in 112409.883 ms 2796c2854 < gcamFindOptimalTimeStep: Complete in 25251.566 ms --- > gcamFindOptimalTimeStep: Complete in 73131.477 ms 2802c2860 < gcamFindOptimalTimeStep: Complete in 79688.797 ms --- > gcamFindOptimalTimeStep: Complete in 118871.523 ms 2806c2864 < gcamFindOptimalTimeStep: Complete in 23383.021 ms --- > gcamFindOptimalTimeStep: Complete in 52258.586 ms 2814c2872 < gcamFindOptimalTimeStep: Complete in 79790.570 ms --- > gcamFindOptimalTimeStep: Complete in 116081.641 ms 2818c2876 < gcamFindOptimalTimeStep: Complete in 26972.617 ms --- > gcamFindOptimalTimeStep: Complete in 65096.277 ms 2824c2882 < gcamFindOptimalTimeStep: Complete in 82258.711 ms --- > gcamFindOptimalTimeStep: Complete in 102061.477 ms 2828c2886 < gcamFindOptimalTimeStep: Complete in 26690.061 ms --- > gcamFindOptimalTimeStep: Complete in 67649.805 ms 2836c2894 < gcamFindOptimalTimeStep: Complete in 84196.102 ms --- > gcamFindOptimalTimeStep: Complete in 137838.984 ms 2840c2898 < gcamFindOptimalTimeStep: Complete in 23315.113 ms --- > gcamFindOptimalTimeStep: Complete in 52672.797 ms 2846c2904 < gcamFindOptimalTimeStep: Complete in 69190.086 ms --- > gcamFindOptimalTimeStep: Complete in 100058.898 ms 2850c2908 < gcamFindOptimalTimeStep: Complete in 25344.955 ms --- > gcamFindOptimalTimeStep: Complete in 49089.266 ms 2858c2916 < gcamFindOptimalTimeStep: Complete in 86273.586 ms --- > gcamFindOptimalTimeStep: Complete in 92935.727 ms 2862c2920 < gcamFindOptimalTimeStep: Complete in 24501.688 ms --- > gcamFindOptimalTimeStep: Complete in 67171.695 ms 2868c2926 < gcamFindOptimalTimeStep: Complete in 77555.992 ms --- > gcamFindOptimalTimeStep: Complete in 96979.406 ms 2872c2930 < gcamFindOptimalTimeStep: Complete in 23341.516 ms --- > gcamFindOptimalTimeStep: Complete in 64711.324 ms 2880c2938 < registration took 13 hours, 40 minutes and 34 seconds. --- > registration took 26 hours, 53 minutes and 48 seconds. 2882,2883c2940,2941 < #@# CA Reg Inv Tue Aug 20 07:57:31 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# CA Reg Inv Tue Aug 20 21:23:54 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 2893c2951 < #@# Remove Neck Tue Aug 20 07:58:58 EDT 2013 --- > #@# Remove Neck Tue Aug 20 21:25:30 EDT 2013 2895c2953 < mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca nu_noneck.mgz --- > mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca nu_noneck.mgz 2898c2956 < reading atlas '/N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca'... --- > reading atlas '/N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca'... 2908c2966 < nonbrain removal took 1 minutes and 55 seconds. --- > nonbrain removal took 2 minutes and 7 seconds. 2910c2968 < #@# SkullLTA Tue Aug 20 08:00:53 EDT 2013 --- > #@# SkullLTA Tue Aug 20 21:27:38 EDT 2013 2912c2970 < mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /N/soft/cle4/freesurfer/5.1.0/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta --- > mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta 2918c2976 < reading '/N/soft/cle4/freesurfer/5.1.0/average/RB_all_withskull_2008-03-26.gca'... --- > reading '/N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_withskull_2008-03-26.gca'... 3048c3106 < registration took 27 minutes and 11 seconds. --- > registration took 29 minutes and 15 seconds. 3050c3108 < #@# SubCort Seg Tue Aug 20 08:28:04 EDT 2013 --- > #@# SubCort Seg Tue Aug 20 21:56:53 EDT 2013 3052c3110 < mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z /N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz --- > mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz 3060c3118 < reading classifier array from /N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca... --- > reading classifier array from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca... 3068c3126 < Atlas used for the 3D morph was /N/soft/cle4/freesurfer/5.1.0/average/RB_all_2008-03-26.gca --- > Atlas used for the 3D morph was /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/RB_all_2008-03-26.gca 3340c3398 < auto-labeling took 30 minutes and 4 seconds. --- > auto-labeling took 32 minutes and 27 seconds. 3342c3400 < mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/transforms/cc_up.lta 10080_3 --- > mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /N/dc/projects/shenlab/subjects/10080_3/mri/transforms/cc_up.lta 10080_3 3346,3348c3404,3406 < will write lta as /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/transforms/cc_up.lta < reading aseg from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.auto_noCCseg.mgz < reading norm from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/norm.mgz --- > will write lta as /N/dc/projects/shenlab/subjects/10080_3/mri/transforms/cc_up.lta > reading aseg from /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.auto_noCCseg.mgz > reading norm from /N/dc/projects/shenlab/subjects/10080_3/mri/norm.mgz 3364c3422 < writing aseg with callosum to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.auto.mgz... --- > writing aseg with callosum to /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.auto.mgz... 3367c3425 < #@# Merge ASeg Tue Aug 20 08:59:27 EDT 2013 --- > #@# Merge ASeg Tue Aug 20 22:30:38 EDT 2013 3372,3373c3430,3431 < #@# Intensity Normalization2 Tue Aug 20 08:59:27 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# Intensity Normalization2 Tue Aug 20 22:30:38 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 3393c3451 < 3D bias adjustment took 6 minutes and 18 seconds. --- > 3D bias adjustment took 5 minutes and 38 seconds. 3404,3405c3462,3463 < #@# Mask BFS Tue Aug 20 09:05:51 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# Mask BFS Tue Aug 20 22:36:24 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 3414c3472 < #@# WM Segmentation Tue Aug 20 09:05:55 EDT 2013 --- > #@# WM Segmentation Tue Aug 20 22:36:31 EDT 2013 3434c3492 < 12106 sparsely connected voxels removed... --- > 12109 sparsely connected voxels removed... 3439c3497 < white matter segmentation took 2.9 minutes --- > white matter segmentation took 2.3 minutes 3445c3503 < auto filling took 0.84 minutes --- > auto filling took 0.99 minutes 3564c3622 < Total Number of Modified Voxels = 2154 (out of 389252: 0.553369) --- > Total Number of Modified Voxels = 2154 (out of 389248: 0.553375) 3571,3572c3629,3630 < #@# Fill Tue Aug 20 09:09:48 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# Fill Tue Aug 20 22:40:03 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 3603c3661 < filling took 1.3 minutes --- > filling took 1.5 minutes 3616,3617c3674,3675 < #@# Tessellate lh Tue Aug 20 09:11:08 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Tessellate lh Tue Aug 20 22:41:33 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 3736c3794 < #@# Smooth1 lh Tue Aug 20 09:11:26 EDT 2013 --- > #@# Smooth1 lh Tue Aug 20 22:41:54 EDT 2013 3740c3798 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 3745c3803 < #@# Inflation1 lh Tue Aug 20 09:11:31 EDT 2013 --- > #@# Inflation1 lh Tue Aug 20 22:42:01 EDT 2013 3749c3807 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 3752c3810 < inflation took 0.8 minutes --- > inflation took 1.4 minutes 3758,3759c3816,3817 < #@# QSphere lh Tue Aug 20 09:12:18 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# QSphere lh Tue Aug 20 22:43:25 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 3858c3916 < spherical transformation took 0.08 hours --- > spherical transformation took 0.15 hours 3861c3919 < #@# Fix Topology lh Tue Aug 20 09:17:12 EDT 2013 --- > #@# Fix Topology lh Tue Aug 20 22:52:25 EDT 2013 3868c3926 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 3916c3974 < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.qsphere.nofix... --- > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.qsphere.nofix... 4396c4454 < writing corrected surface to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.orig... --- > writing corrected surface to /N/dc/projects/shenlab/subjects/10080_3/surf/lh.orig... 4399c4457 < topology fixing took 154.4 minutes --- > topology fixing took 160.1 minutes 4413c4471 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 4426,4427c4484,4485 < #@# Make White Surf lh Tue Aug 20 11:51:45 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Make White Surf lh Wed Aug 21 01:32:39 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 4437,4439c4495,4497 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/filled.mgz... < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/brain.finalsurfs.mgz... < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/filled.mgz... > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/brain.finalsurfs.mgz... > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... 4442c4500 < reading original surface position from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.orig... --- > reading original surface position from /N/dc/projects/shenlab/subjects/10080_3/surf/lh.orig... 4444,4445c4502,4503 < border white: 244744 voxels (1.46%) < border gray 258501 voxels (1.54%) --- > border white: 244740 voxels (1.46%) > border gray 258458 voxels (1.54%) 4456c4514 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.mgz... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.mgz... 4473c4531 < tol=1.0e-04, sigma=2.0, host=nid00, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=2.0, host=q0190, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4480c4538 < 3778 vertices more than 2 sigmas from mean. --- > 3783 vertices more than 2 sigmas from mean. 4482,4494c4540,4552 < 000: dt: 0.0000, sse=7359547.5, rms=14.87 < 001: dt: 0.5000, sse=7235327.5, rms=11.13 < 002: dt: 0.5000, sse=7322079.5, rms=8.97 < 003: dt: 0.5000, sse=7527759.5, rms=7.70 < 004: dt: 0.5000, sse=7644770.0, rms=6.85 < 005: dt: 0.5000, sse=7732779.0, rms=6.31 < 006: dt: 0.5000, sse=7760033.0, rms=5.89 < 007: dt: 0.5000, sse=7796049.5, rms=5.59 < 008: dt: 0.5000, sse=7783441.5, rms=5.31 < 009: dt: 0.5000, sse=7772153.0, rms=5.12 < 010: dt: 0.5000, sse=7764582.5, rms=4.93 < 011: dt: 0.5000, sse=7725918.0, rms=4.83 < 012: dt: 0.5000, sse=7711325.0, rms=4.72 --- > 000: dt: 0.0000, sse=7359506.0, rms=14.87 > 001: dt: 0.5000, sse=7235294.0, rms=11.13 > 002: dt: 0.5000, sse=7322160.0, rms=8.97 > 003: dt: 0.5000, sse=7527626.0, rms=7.70 > 004: dt: 0.5000, sse=7644691.0, rms=6.85 > 005: dt: 0.5000, sse=7732891.0, rms=6.31 > 006: dt: 0.5000, sse=7759881.0, rms=5.89 > 007: dt: 0.5000, sse=7795871.0, rms=5.59 > 008: dt: 0.5000, sse=7783236.5, rms=5.31 > 009: dt: 0.5000, sse=7771631.5, rms=5.12 > 010: dt: 0.5000, sse=7764362.0, rms=4.93 > 011: dt: 0.5000, sse=7725814.0, rms=4.83 > 012: dt: 0.5000, sse=7710802.0, rms=4.72 4496,4498c4554,4556 < 013: dt: 0.5000, sse=7689274.0, rms=4.68 < 014: dt: 0.2500, sse=5280609.0, rms=3.89 < 015: dt: 0.2500, sse=5037043.5, rms=3.68 --- > 013: dt: 0.5000, sse=7688844.5, rms=4.68 > 014: dt: 0.2500, sse=5280331.0, rms=3.89 > 015: dt: 0.2500, sse=5036866.5, rms=3.68 4500,4501c4558,4559 < 016: dt: 0.2500, sse=4834994.0, rms=3.66 < 017: dt: 0.1250, sse=4653143.0, rms=3.50 --- > 016: dt: 0.2500, sse=4835093.5, rms=3.66 > 017: dt: 0.1250, sse=4653141.5, rms=3.50 4503,4504c4561,4562 < 018: dt: 0.1250, sse=4611130.5, rms=3.47 < positioning took 2.1 minutes --- > 018: dt: 0.1250, sse=4610978.0, rms=3.47 > positioning took 2.4 minutes 4512c4570 < mean border=80.0, 1289 (930) missing vertices, mean dist -0.2 [0.5 (%65.6)->0.3 (%34.4))] --- > mean border=80.0, 1291 (929) missing vertices, mean dist -0.2 [0.5 (%65.6)->0.3 (%34.4))] 4514c4572 < tol=1.0e-04, sigma=1.0, host=nid00, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=1.0, host=q0190, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4521c4579 < 2951 vertices more than 2 sigmas from mean. --- > 2945 vertices more than 2 sigmas from mean. 4523,4524c4581,4582 < 000: dt: 0.0000, sse=5028096.5, rms=5.31 < 019: dt: 0.5000, sse=5605488.0, rms=4.20 --- > 000: dt: 0.0000, sse=5027764.0, rms=5.31 > 019: dt: 0.5000, sse=5604365.5, rms=4.20 4526,4528c4584,4586 < 020: dt: 0.2500, sse=5171688.5, rms=3.60 < 021: dt: 0.2500, sse=5045686.0, rms=3.29 < 022: dt: 0.2500, sse=4957077.0, rms=3.14 --- > 020: dt: 0.2500, sse=5171070.0, rms=3.60 > 021: dt: 0.2500, sse=5045587.0, rms=3.29 > 022: dt: 0.2500, sse=4956659.0, rms=3.14 4530,4534c4588,4592 < 023: dt: 0.2500, sse=4946423.0, rms=3.10 < 024: dt: 0.1250, sse=4808453.0, rms=2.93 < rms = 2.88, time step reduction 3 of 3 to 0.062... < 025: dt: 0.1250, sse=4773551.0, rms=2.88 < positioning took 0.9 minutes --- > 023: dt: 0.2500, sse=4946012.0, rms=3.10 > 024: dt: 0.1250, sse=4808418.0, rms=2.93 > rms = 2.89, time step reduction 3 of 3 to 0.062... > 025: dt: 0.1250, sse=4773308.0, rms=2.89 > positioning took 1.1 minutes 4539c4597 < tol=1.0e-04, sigma=0.5, host=nid00, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=0.5, host=q0190, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4546c4604 < 2780 vertices more than 2 sigmas from mean. --- > 2770 vertices more than 2 sigmas from mean. 4548,4549c4606,4607 < 000: dt: 0.0000, sse=5031344.5, rms=4.53 < 026: dt: 0.5000, sse=5437368.5, rms=3.84 --- > 000: dt: 0.0000, sse=5031047.5, rms=4.53 > 026: dt: 0.5000, sse=5438075.0, rms=3.84 4551,4553c4609,4611 < 027: dt: 0.2500, sse=5092586.0, rms=3.08 < 028: dt: 0.2500, sse=5119669.0, rms=2.84 < 029: dt: 0.2500, sse=5069576.0, rms=2.77 --- > 027: dt: 0.2500, sse=5093266.0, rms=3.09 > 028: dt: 0.2500, sse=5120277.5, rms=2.84 > 029: dt: 0.2500, sse=5069037.5, rms=2.77 4555,4556c4613,4614 < 030: dt: 0.2500, sse=5079903.5, rms=2.76 < 031: dt: 0.1250, sse=4943005.0, rms=2.59 --- > 030: dt: 0.2500, sse=5078411.0, rms=2.76 > 031: dt: 0.1250, sse=4942608.5, rms=2.59 4558,4559c4616,4617 < 032: dt: 0.1250, sse=4921851.0, rms=2.56 < positioning took 0.9 minutes --- > 032: dt: 0.1250, sse=4921458.5, rms=2.56 > positioning took 1.1 minutes 4564c4622 < mean border=83.7, 1259 (836) missing vertices, mean dist -0.1 [0.3 (%57.5)->0.2 (%42.5))] --- > mean border=83.7, 1258 (836) missing vertices, mean dist -0.1 [0.3 (%57.5)->0.2 (%42.5))] 4566c4624 < tol=1.0e-04, sigma=0.2, host=nid00, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=0.2, host=q0190, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4569c4627 < writing white matter surface to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... --- > writing white matter surface to /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... 4571,4575c4629,4633 < 000: dt: 0.0000, sse=4949012.5, rms=2.87 < rms = 3.19, time step reduction 1 of 3 to 0.250... < 033: dt: 0.2500, sse=5124376.5, rms=2.42 < 034: dt: 0.2500, sse=5505558.5, rms=2.25 < rms = 2.33, time step reduction 2 of 3 to 0.125... --- > 000: dt: 0.0000, sse=4948750.5, rms=2.88 > rms = 3.18, time step reduction 1 of 3 to 0.250... > 033: dt: 0.2500, sse=5123880.0, rms=2.42 > 034: dt: 0.2500, sse=5506199.0, rms=2.25 > rms = 2.34, time step reduction 2 of 3 to 0.125... 4577,4578c4635,4636 < 035: dt: 0.1250, sse=5495025.5, rms=2.21 < positioning took 0.5 minutes --- > 035: dt: 0.1250, sse=5495603.0, rms=2.21 > positioning took 0.6 minutes 4595,4597c4653,4655 < writing cortex label to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/lh.cortex.label... < LabelWrite: saving to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/lh.cortex.label < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.curv --- > writing cortex label to /N/dc/projects/shenlab/subjects/10080_3/label/lh.cortex.label... > LabelWrite: saving to /N/dc/projects/shenlab/subjects/10080_3/label/lh.cortex.label > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/lh.curv 4599c4657 < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.area --- > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/lh.area 4602c4660 < refinement took 6.4 minutes --- > refinement took 8.3 minutes 4604c4662 < #@# Smooth2 lh Tue Aug 20 11:58:12 EDT 2013 --- > #@# Smooth2 lh Wed Aug 21 01:40:55 EDT 2013 4608c4666 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 4614,4615c4672,4673 < #@# Inflation2 lh Tue Aug 20 11:58:18 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Inflation2 lh Wed Aug 21 01:41:01 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 4619c4677 < avg radius = 44.6 mm, total surface area = 72737 mm^2 --- > avg radius = 44.6 mm, total surface area = 72736 mm^2 4624c4682 < inflation took 0.9 minutes --- > inflation took 1.2 minutes 4631,4634c4689,4692 < 285 vertices thresholded to be in k1 ~ [-0.81 0.41], k2 ~ [-0.16 0.11] < total integrated curvature = 0.253*4pi (3.178) --> 1 handles < ICI = 1.5, FI = 9.9, variation=172.075 < 163 vertices thresholded to be in [-0.03 0.04] --- > 289 vertices thresholded to be in k1 ~ [-0.54 0.51], k2 ~ [-0.17 0.11] > total integrated curvature = 0.248*4pi (3.110) --> 1 handles > ICI = 1.5, FI = 9.9, variation=172.224 > 161 vertices thresholded to be in [-0.03 0.04] 4637c4695 < 132 vertices thresholded to be in [-0.32 0.20] --- > 134 vertices thresholded to be in [-0.27 0.23] 4639c4697 < writing mean curvature to ../surf/lh.inflated.H...curvature mean = -0.017, std = 0.029 --- > writing mean curvature to ../surf/lh.inflated.H...curvature mean = -0.016, std = 0.029 4643,4644c4701,4702 < #@# Curvature Stats lh Tue Aug 20 12:01:03 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf --- > #@# Curvature Stats lh Wed Aug 21 01:44:09 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/surf 4662c4720 < deltaViolations [ 265 ] --- > deltaViolations [ 267 ] 4665c4723 < WARN: S lookup min: -0.298151 --- > WARN: S lookup min: -0.298140 4668,4669c4726,4727 < #@# Sphere lh Tue Aug 20 12:01:08 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Sphere lh Wed Aug 21 01:44:16 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 4680c4738 < spherical transformation took 1.21 hours --- > spherical transformation took 1.63 hours 4682,4683c4740,4741 < pass 1: epoch 1 of 3 starting distance error %19.87 < pass 1: epoch 2 of 3 starting distance error %19.86 --- > pass 1: epoch 1 of 3 starting distance error %19.82 > pass 1: epoch 2 of 3 starting distance error %19.78 4685c4743 < starting distance error %19.70 --- > starting distance error %19.65 4687c4745 < final distance error %19.73 --- > final distance error %19.69 4689,4690c4747,4748 < #@# Surf Reg lh Tue Aug 20 13:13:42 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Surf Reg lh Wed Aug 21 03:21:58 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 4692c4750 < mris_register -curv ../surf/lh.sphere /N/soft/cle4/freesurfer/5.1.0/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg --- > mris_register -curv ../surf/lh.sphere /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg 4698c4756 < reading template parameterization from /N/soft/cle4/freesurfer/5.1.0/average/lh.average.curvature.filled.buckner40.tif... --- > reading template parameterization from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/lh.average.curvature.filled.buckner40.tif... 4701c4759 < curvature mean = 0.051, std = 0.934 --- > curvature mean = 0.052, std = 0.934 4703,4717c4761,4776 < curvature mean = 0.007, std = 0.932 < curvature mean = 0.006, std = 0.917 < curvature mean = 0.005, std = 0.945 < curvature mean = 0.002, std = 0.952 < curvature mean = 0.004, std = 0.947 < curvature mean = 0.000, std = 0.973 < curvature mean = -0.031, std = 0.511 < curvature mean = 0.003, std = 0.066 < curvature mean = 0.042, std = 0.199 < curvature mean = 0.002, std = 0.078 < curvature mean = 0.021, std = 0.308 < curvature mean = 0.002, std = 0.084 < curvature mean = 0.011, std = 0.388 < curvature mean = 0.002, std = 0.087 < curvature mean = 0.004, std = 0.494 --- > curvature mean = -0.004, std = 0.929 > curvature mean = 0.001, std = 0.914 > curvature mean = -0.006, std = 0.941 > curvature mean = -0.001, std = 0.952 > curvature mean = -0.007, std = 0.944 > curvature mean = -0.000, std = 0.975 > curvature mean = -0.030, std = 0.566 > curvature mean = 0.005, std = 0.068 > curvature mean = 0.033, std = 0.182 > curvature mean = 0.003, std = 0.080 > curvature mean = 0.019, std = 0.271 > curvature mean = 0.003, std = 0.086 > curvature mean = 0.009, std = 0.361 > curvature mean = 0.003, std = 0.088 > curvature mean = 0.001, std = 0.483 > expanding nbhd size to 1 4719c4778 < #@# Jacobian white lh Tue Aug 20 14:00:45 EDT 2013 --- > #@# Jacobian white lh Wed Aug 21 04:24:11 EDT 2013 4726,4727c4785,4786 < #@# AvgCurv lh Tue Aug 20 14:00:47 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# AvgCurv lh Wed Aug 21 04:24:13 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 4729c4788 < mrisp_paint -a 5 /N/soft/cle4/freesurfer/5.1.0/average/lh.average.curvature.filled.buckner40.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv --- > mrisp_paint -a 5 /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/lh.average.curvature.filled.buckner40.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv 4733c4792 < reading template parameterization from /N/soft/cle4/freesurfer/5.1.0/average/lh.average.curvature.filled.buckner40.tif... --- > reading template parameterization from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/lh.average.curvature.filled.buckner40.tif... 4736,4737c4795,4796 < #@# Cortical Parc lh Tue Aug 20 14:00:50 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Cortical Parc lh Wed Aug 21 04:24:16 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 4739c4798 < mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 10080_3 lh ../surf/lh.sphere.reg /N/soft/cle4/freesurfer/5.1.0/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/lh.aparc.annot --- > mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 10080_3 lh ../surf/lh.sphere.reg /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/lh.aparc.annot 4745c4804 < reading atlas from /N/soft/cle4/freesurfer/5.1.0/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... --- > reading atlas from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... 4751c4810 < 2085 labels changed using aseg --- > 2301 labels changed using aseg 4753,4777c4812,4828 < 000: 2750 changed, 120457 examined... < 001: 694 changed, 11884 examined... < 002: 197 changed, 3832 examined... < 003: 87 changed, 1053 examined... < 004: 50 changed, 472 examined... < 005: 25 changed, 244 examined... < 006: 21 changed, 132 examined... < 007: 12 changed, 99 examined... < 008: 22 changed, 74 examined... < 009: 15 changed, 76 examined... < 010: 4 changed, 62 examined... < 011: 5 changed, 23 examined... < 012: 6 changed, 26 examined... < 013: 9 changed, 30 examined... < 014: 6 changed, 33 examined... < 015: 8 changed, 32 examined... < 016: 5 changed, 29 examined... < 017: 2 changed, 20 examined... < 018: 3 changed, 10 examined... < 019: 0 changed, 18 examined... < 504 labels changed using aseg < 000: 167 total segments, 110 labels (629 vertices) changed < 001: 60 total segments, 3 labels (11 vertices) changed < 002: 57 total segments, 0 labels (0 vertices) changed < 10 filter iterations complete (10 requested, 33 changed) --- > 000: 2731 changed, 120457 examined... > 001: 624 changed, 11581 examined... > 002: 157 changed, 3481 examined... > 003: 65 changed, 905 examined... > 004: 35 changed, 365 examined... > 005: 15 changed, 176 examined... > 006: 4 changed, 89 examined... > 007: 1 changed, 29 examined... > 008: 3 changed, 9 examined... > 009: 2 changed, 17 examined... > 010: 1 changed, 13 examined... > 011: 0 changed, 7 examined... > 227 labels changed using aseg > 000: 167 total segments, 124 labels (559 vertices) changed > 001: 43 total segments, 1 labels (230 vertices) changed > 002: 42 total segments, 0 labels (0 vertices) changed > 10 filter iterations complete (10 requested, 20 changed) 4781,4782c4832,4833 < 2783 vertices marked for relabeling... < 2783 labels changed in reclassification. --- > 3379 vertices marked for relabeling... > 3379 labels changed in reclassification. 4784c4835 < classification took 1 minutes and 29 seconds. --- > classification took 0 minutes and 57 seconds. 4786,4787c4837,4838 < #@# Make Pial Surf lh Tue Aug 20 14:02:19 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Make Pial Surf lh Wed Aug 21 04:25:12 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 4796,4798c4847,4849 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/filled.mgz... < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/brain.finalsurfs.mgz... < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/filled.mgz... > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/brain.finalsurfs.mgz... > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... 4801c4852 < reading original surface position from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.orig... --- > reading original surface position from /N/dc/projects/shenlab/subjects/10080_3/surf/lh.orig... 4803,4804c4854,4855 < border white: 244744 voxels (1.46%) < border gray 258501 voxels (1.54%) --- > border white: 244740 voxels (1.46%) > border gray 258458 voxels (1.54%) 4822c4873 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.mgz... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.mgz... 4843c4894 < tol=1.0e-04, sigma=2.0, host=nid00, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=2.0, host=q0190, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4850c4901 < 3935 vertices more than 2 sigmas from mean. --- > 3940 vertices more than 2 sigmas from mean. 4852,4864c4903,4915 < 000: dt: 0.0000, sse=7471388.0, rms=14.96 < 001: dt: 0.5000, sse=7343954.5, rms=11.25 < 002: dt: 0.5000, sse=7423015.0, rms=9.11 < 003: dt: 0.5000, sse=7622240.0, rms=7.85 < 004: dt: 0.5000, sse=7731215.5, rms=6.98 < 005: dt: 0.5000, sse=7810836.0, rms=6.42 < 006: dt: 0.5000, sse=7838432.0, rms=5.99 < 007: dt: 0.5000, sse=7874853.5, rms=5.69 < 008: dt: 0.5000, sse=7861431.0, rms=5.40 < 009: dt: 0.5000, sse=7851650.0, rms=5.21 < 010: dt: 0.5000, sse=7842002.5, rms=5.03 < 011: dt: 0.5000, sse=7809931.5, rms=4.92 < 012: dt: 0.5000, sse=7788765.5, rms=4.80 --- > 000: dt: 0.0000, sse=7471346.5, rms=14.96 > 001: dt: 0.5000, sse=7343921.5, rms=11.25 > 002: dt: 0.5000, sse=7423097.5, rms=9.11 > 003: dt: 0.5000, sse=7622102.0, rms=7.85 > 004: dt: 0.5000, sse=7731145.5, rms=6.98 > 005: dt: 0.5000, sse=7810945.5, rms=6.42 > 006: dt: 0.5000, sse=7838290.0, rms=5.99 > 007: dt: 0.5000, sse=7874668.0, rms=5.69 > 008: dt: 0.5000, sse=7861236.5, rms=5.40 > 009: dt: 0.5000, sse=7851122.5, rms=5.21 > 010: dt: 0.5000, sse=7841792.5, rms=5.03 > 011: dt: 0.5000, sse=7809820.5, rms=4.92 > 012: dt: 0.5000, sse=7788253.0, rms=4.80 4866,4868c4917,4919 < 013: dt: 0.5000, sse=7769251.0, rms=4.76 < 014: dt: 0.2500, sse=5344982.0, rms=3.98 < 015: dt: 0.2500, sse=5094174.5, rms=3.78 --- > 013: dt: 0.5000, sse=7768814.0, rms=4.76 > 014: dt: 0.2500, sse=5344708.5, rms=3.98 > 015: dt: 0.2500, sse=5093947.0, rms=3.78 4870,4871c4921,4922 < 016: dt: 0.2500, sse=4888459.0, rms=3.74 < 017: dt: 0.1250, sse=4704662.0, rms=3.59 --- > 016: dt: 0.2500, sse=4888595.0, rms=3.74 > 017: dt: 0.1250, sse=4704655.5, rms=3.59 4873,4874c4924,4925 < 018: dt: 0.1250, sse=4662537.0, rms=3.56 < positioning took 2.4 minutes --- > 018: dt: 0.1250, sse=4662389.0, rms=3.56 > positioning took 2.3 minutes 4890c4941 < mean border=80.1, 1520 (965) missing vertices, mean dist -0.2 [0.5 (%65.6)->0.3 (%34.4))] --- > mean border=80.1, 1522 (964) missing vertices, mean dist -0.2 [0.5 (%65.7)->0.3 (%34.3))] 4892c4943 < tol=1.0e-04, sigma=1.0, host=nid00, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=1.0, host=q0190, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4899c4950 < 3160 vertices more than 2 sigmas from mean. --- > 3153 vertices more than 2 sigmas from mean. 4901,4902c4952,4953 < 000: dt: 0.0000, sse=5183701.0, rms=5.51 < 019: dt: 0.5000, sse=5786481.5, rms=4.47 --- > 000: dt: 0.0000, sse=5183354.5, rms=5.51 > 019: dt: 0.5000, sse=5785571.0, rms=4.47 4904,4906c4955,4957 < 020: dt: 0.2500, sse=5343247.5, rms=3.91 < 021: dt: 0.2500, sse=5212616.5, rms=3.61 < 022: dt: 0.2500, sse=5119346.5, rms=3.47 --- > 020: dt: 0.2500, sse=5342723.5, rms=3.91 > 021: dt: 0.2500, sse=5212606.5, rms=3.61 > 022: dt: 0.2500, sse=5118811.5, rms=3.47 4908,4909c4959,4960 < 023: dt: 0.2500, sse=5116389.0, rms=3.43 < 024: dt: 0.1250, sse=4967001.0, rms=3.28 --- > 023: dt: 0.2500, sse=5116118.5, rms=3.43 > 024: dt: 0.1250, sse=4966999.5, rms=3.28 4911c4962 < 025: dt: 0.1250, sse=4928764.5, rms=3.23 --- > 025: dt: 0.1250, sse=4928484.0, rms=3.23 4933c4984 < tol=1.0e-04, sigma=0.5, host=nid00, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=0.5, host=q0190, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4940c4991 < 2974 vertices more than 2 sigmas from mean. --- > 2959 vertices more than 2 sigmas from mean. 4942,4947c4993,4998 < 000: dt: 0.0000, sse=5188493.0, rms=4.73 < 026: dt: 0.5000, sse=5617193.0, rms=4.08 < rms = 4.25, time step reduction 1 of 3 to 0.250... < 027: dt: 0.2500, sse=5252921.0, rms=3.38 < 028: dt: 0.2500, sse=5277798.0, rms=3.15 < 029: dt: 0.2500, sse=5235215.0, rms=3.09 --- > 000: dt: 0.0000, sse=5188141.0, rms=4.73 > 026: dt: 0.5000, sse=5617328.0, rms=4.08 > rms = 4.24, time step reduction 1 of 3 to 0.250... > 027: dt: 0.2500, sse=5253330.5, rms=3.38 > 028: dt: 0.2500, sse=5278548.5, rms=3.15 > 029: dt: 0.2500, sse=5234264.0, rms=3.09 4949,4950c5000,5001 < 030: dt: 0.2500, sse=5245480.0, rms=3.08 < 031: dt: 0.1250, sse=5095018.0, rms=2.91 --- > 030: dt: 0.2500, sse=5244435.0, rms=3.08 > 031: dt: 0.1250, sse=5094718.5, rms=2.91 4952,4953c5003,5004 < 032: dt: 0.1250, sse=5086366.0, rms=2.88 < positioning took 1.0 minutes --- > 032: dt: 0.1250, sse=5085661.5, rms=2.88 > positioning took 0.9 minutes 4969c5020 < mean border=83.8, 1554 (862) missing vertices, mean dist -0.1 [0.3 (%57.6)->0.2 (%42.4))] --- > mean border=83.8, 1557 (862) missing vertices, mean dist -0.1 [0.3 (%57.6)->0.2 (%42.4))] 4971c5022 < tol=1.0e-04, sigma=0.2, host=nid00, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=0.2, host=q0190, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4977c5028 < 000: dt: 0.0000, sse=5112504.0, rms=3.13 --- > 000: dt: 0.0000, sse=5111879.5, rms=3.13 4979,4981c5030,5032 < 033: dt: 0.2500, sse=5289784.5, rms=2.72 < 034: dt: 0.2500, sse=5702251.5, rms=2.57 < rms = 2.63, time step reduction 2 of 3 to 0.125... --- > 033: dt: 0.2500, sse=5288941.0, rms=2.72 > 034: dt: 0.2500, sse=5703447.0, rms=2.57 > rms = 2.64, time step reduction 2 of 3 to 0.125... 4983c5034 < 035: dt: 0.1250, sse=5686332.5, rms=2.53 --- > 035: dt: 0.1250, sse=5687440.0, rms=2.53 4991,4993c5042,5044 < mean border=54.2, 1732 (1732) missing vertices, mean dist 2.0 [2.2 (%0.5)->2.2 (%99.5))] < %44 local maxima, %40 large gradients and % 9 min vals, 365 gradients ignored < tol=1.0e-04, sigma=2.0, host=nid00, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > mean border=54.2, 1737 (1737) missing vertices, mean dist 2.0 [2.2 (%0.5)->2.2 (%99.5))] > %44 local maxima, %40 large gradients and % 9 min vals, 368 gradients ignored > tol=1.0e-04, sigma=2.0, host=q0190, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 4998,5020c5049,5071 < 000: dt: 0.0000, sse=22393444.0, rms=29.59 < 001: dt: 0.5000, sse=16909366.0, rms=25.05 < 002: dt: 0.5000, sse=12955169.0, rms=21.14 < 003: dt: 0.5000, sse=10586114.0, rms=18.20 < 004: dt: 0.5000, sse=9447442.0, rms=16.05 < 005: dt: 0.5000, sse=8748808.0, rms=14.35 < 006: dt: 0.5000, sse=8236472.5, rms=12.92 < 007: dt: 0.5000, sse=7902881.5, rms=11.74 < 008: dt: 0.5000, sse=7615945.0, rms=10.67 < 009: dt: 0.5000, sse=7504638.0, rms=9.76 < 010: dt: 0.5000, sse=7391028.5, rms=8.99 < 011: dt: 0.5000, sse=7452365.0, rms=8.43 < 012: dt: 0.5000, sse=7427679.5, rms=7.96 < 013: dt: 0.5000, sse=7489235.0, rms=7.64 < 014: dt: 0.5000, sse=7506681.0, rms=7.33 < 015: dt: 0.5000, sse=7527467.0, rms=7.13 < 016: dt: 0.5000, sse=7505737.0, rms=6.91 < 017: dt: 0.5000, sse=7518296.5, rms=6.78 < 018: dt: 0.5000, sse=7510504.0, rms=6.61 < 019: dt: 0.5000, sse=7505235.5, rms=6.51 < 020: dt: 0.5000, sse=7513553.0, rms=6.38 < 021: dt: 0.5000, sse=7458645.5, rms=6.33 < 022: dt: 0.5000, sse=7461530.5, rms=6.24 --- > 000: dt: 0.0000, sse=22397556.0, rms=29.59 > 001: dt: 0.5000, sse=16913314.0, rms=25.05 > 002: dt: 0.5000, sse=12960290.0, rms=21.14 > 003: dt: 0.5000, sse=10594499.0, rms=18.20 > 004: dt: 0.5000, sse=9454539.0, rms=16.06 > 005: dt: 0.5000, sse=8754095.0, rms=14.35 > 006: dt: 0.5000, sse=8240429.0, rms=12.93 > 007: dt: 0.5000, sse=7909250.0, rms=11.74 > 008: dt: 0.5000, sse=7619903.5, rms=10.68 > 009: dt: 0.5000, sse=7503103.5, rms=9.76 > 010: dt: 0.5000, sse=7395546.0, rms=9.00 > 011: dt: 0.5000, sse=7439596.5, rms=8.43 > 012: dt: 0.5000, sse=7424046.5, rms=7.97 > 013: dt: 0.5000, sse=7486288.0, rms=7.64 > 014: dt: 0.5000, sse=7509924.0, rms=7.34 > 015: dt: 0.5000, sse=7502910.5, rms=7.13 > 016: dt: 0.5000, sse=7512851.5, rms=6.92 > 017: dt: 0.5000, sse=7511839.5, rms=6.78 > 018: dt: 0.5000, sse=7510241.5, rms=6.61 > 019: dt: 0.5000, sse=7499599.0, rms=6.51 > 020: dt: 0.5000, sse=7509224.5, rms=6.38 > 021: dt: 0.5000, sse=7439515.0, rms=6.32 > 022: dt: 0.5000, sse=7448987.5, rms=6.23 5022,5024c5073,5075 < 023: dt: 0.5000, sse=7451404.0, rms=6.19 < 024: dt: 0.2500, sse=5291326.5, rms=5.20 < 025: dt: 0.2500, sse=5068553.0, rms=4.97 --- > 023: dt: 0.5000, sse=7425673.5, rms=6.19 > 024: dt: 0.2500, sse=5278419.5, rms=5.19 > 025: dt: 0.2500, sse=5067977.5, rms=4.98 5026,5028c5077,5079 < 026: dt: 0.1250, sse=4860084.5, rms=4.76 < 027: dt: 0.1250, sse=4556914.5, rms=4.49 < 028: dt: 0.1250, sse=4467212.5, rms=4.41 --- > 026: dt: 0.1250, sse=4860260.0, rms=4.76 > 027: dt: 0.1250, sse=4549638.0, rms=4.49 > 028: dt: 0.1250, sse=4456755.5, rms=4.41 5030,5034c5081,5085 < 029: dt: 0.1250, sse=4427646.0, rms=4.40 < positioning took 4.0 minutes < mean border=49.9, 2216 (1304) missing vertices, mean dist 0.3 [0.2 (%33.2)->0.6 (%66.8))] < %57 local maxima, %30 large gradients and % 7 min vals, 214 gradients ignored < tol=1.0e-04, sigma=1.0, host=nid00, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > 029: dt: 0.1250, sse=4421603.5, rms=4.40 > positioning took 3.6 minutes > mean border=49.9, 2205 (1309) missing vertices, mean dist 0.3 [0.2 (%33.1)->0.6 (%66.9))] > %57 local maxima, %30 large gradients and % 7 min vals, 201 gradients ignored > tol=1.0e-04, sigma=1.0, host=q0190, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 5039,5041c5090,5092 < 000: dt: 0.0000, sse=5531229.5, rms=7.61 < 030: dt: 0.5000, sse=5920713.5, rms=6.86 < 031: dt: 0.5000, sse=6993991.0, rms=6.42 --- > 000: dt: 0.0000, sse=5527641.5, rms=7.62 > 030: dt: 0.5000, sse=5914001.5, rms=6.87 > 031: dt: 0.5000, sse=6981997.0, rms=6.43 5043,5054c5094,5105 < 032: dt: 0.2500, sse=5762386.0, rms=5.34 < 033: dt: 0.2500, sse=5437400.5, rms=5.13 < rms = 5.32, time step reduction 2 of 3 to 0.125... < 034: dt: 0.1250, sse=5248784.0, rms=4.91 < 035: dt: 0.1250, sse=5020629.5, rms=4.65 < 036: dt: 0.1250, sse=4936235.0, rms=4.54 < rms = 4.50, time step reduction 3 of 3 to 0.062... < 037: dt: 0.1250, sse=4889378.5, rms=4.50 < positioning took 1.2 minutes < mean border=47.6, 2532 (1268) missing vertices, mean dist 0.2 [0.2 (%33.6)->0.3 (%66.4))] < %65 local maxima, %22 large gradients and % 7 min vals, 217 gradients ignored < tol=1.0e-04, sigma=0.5, host=nid00, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > 032: dt: 0.2500, sse=5762635.5, rms=5.35 > 033: dt: 0.2500, sse=5435650.5, rms=5.13 > rms = 5.33, time step reduction 2 of 3 to 0.125... > 034: dt: 0.1250, sse=5242891.5, rms=4.92 > 035: dt: 0.1250, sse=5009228.0, rms=4.66 > 036: dt: 0.1250, sse=4941452.5, rms=4.54 > rms = 4.51, time step reduction 3 of 3 to 0.062... > 037: dt: 0.1250, sse=4902913.0, rms=4.51 > positioning took 1.1 minutes > mean border=47.6, 2472 (1271) missing vertices, mean dist 0.2 [0.2 (%33.6)->0.3 (%66.4))] > %64 local maxima, %22 large gradients and % 7 min vals, 197 gradients ignored > tol=1.0e-04, sigma=0.5, host=q0190, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 5059,5072c5110,5123 < 000: dt: 0.0000, sse=5131362.0, rms=5.47 < rms = 6.45, time step reduction 1 of 3 to 0.250... < 038: dt: 0.2500, sse=4931000.0, rms=4.84 < 039: dt: 0.2500, sse=4979456.5, rms=4.67 < rms = 4.91, time step reduction 2 of 3 to 0.125... < 040: dt: 0.1250, sse=4887219.5, rms=4.52 < 041: dt: 0.1250, sse=4847625.0, rms=4.37 < 042: dt: 0.1250, sse=4850357.0, rms=4.29 < rms = 4.25, time step reduction 3 of 3 to 0.062... < 043: dt: 0.1250, sse=4878638.0, rms=4.25 < positioning took 1.0 minutes < mean border=46.8, 3198 (1264) missing vertices, mean dist 0.1 [0.2 (%42.8)->0.3 (%57.2))] < %66 local maxima, %21 large gradients and % 7 min vals, 194 gradients ignored < tol=1.0e-04, sigma=0.2, host=nid00, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > 000: dt: 0.0000, sse=5139144.5, rms=5.45 > rms = 6.44, time step reduction 1 of 3 to 0.250... > 038: dt: 0.2500, sse=4940802.0, rms=4.82 > 039: dt: 0.2500, sse=4971991.5, rms=4.65 > rms = 4.90, time step reduction 2 of 3 to 0.125... > 040: dt: 0.1250, sse=4881178.0, rms=4.51 > 041: dt: 0.1250, sse=4841680.0, rms=4.36 > 042: dt: 0.1250, sse=4845750.0, rms=4.27 > rms = 4.23, time step reduction 3 of 3 to 0.062... > 043: dt: 0.1250, sse=4869855.0, rms=4.23 > positioning took 0.9 minutes > mean border=46.8, 3120 (1257) missing vertices, mean dist 0.1 [0.2 (%42.8)->0.3 (%57.2))] > %66 local maxima, %21 large gradients and % 7 min vals, 191 gradients ignored > tol=1.0e-04, sigma=0.2, host=q0190, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 5075c5126 < writing pial surface to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.pial... --- > writing pial surface to /N/dc/projects/shenlab/subjects/10080_3/surf/lh.pial... 5077,5084c5128,5135 < 000: dt: 0.0000, sse=4887715.0, rms=4.31 < rms = 5.76, time step reduction 1 of 3 to 0.250... < 044: dt: 0.2500, sse=4841969.5, rms=4.09 < rms = 4.12, time step reduction 2 of 3 to 0.125... < rms = 4.04, time step reduction 3 of 3 to 0.062... < 045: dt: 0.1250, sse=4832569.5, rms=4.04 < positioning took 0.5 minutes < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.curv.pial --- > 000: dt: 0.0000, sse=4876032.0, rms=4.27 > rms = 5.72, time step reduction 1 of 3 to 0.250... > 044: dt: 0.2500, sse=4834122.5, rms=4.05 > rms = 4.09, time step reduction 2 of 3 to 0.125... > rms = 4.01, time step reduction 3 of 3 to 0.062... > 045: dt: 0.1250, sse=4825109.0, rms=4.01 > positioning took 0.4 minutes > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/lh.curv.pial 5086,5088c5137,5139 < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.area.pial < vertex spacing 1.01 +- 0.46 (0.05-->7.71) (max @ vno 83583 --> 82652) < face area 0.41 +- 0.34 (0.00-->9.58) --- > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/lh.area.pial > vertex spacing 1.01 +- 0.46 (0.05-->8.02) (max @ vno 83583 --> 82652) > face area 0.41 +- 0.34 (0.00-->9.59) 5101,5104c5152,5155 < thickness calculation complete, 1293:1463 truncations. < 59352 vertices at 0 distance < 70386 vertices at 1 distance < 57728 vertices at 2 distance --- > thickness calculation complete, 1319:1449 truncations. > 59254 vertices at 0 distance > 70389 vertices at 1 distance > 57765 vertices at 2 distance 5106,5120c5157,5171 < 9711 vertices at 4 distance < 3586 vertices at 5 distance < 1489 vertices at 6 distance < 665 vertices at 7 distance < 399 vertices at 8 distance < 236 vertices at 9 distance < 180 vertices at 10 distance < 123 vertices at 11 distance < 113 vertices at 12 distance < 66 vertices at 13 distance < 37 vertices at 14 distance < 52 vertices at 15 distance < 37 vertices at 16 distance < 35 vertices at 17 distance < 28 vertices at 18 distance --- > 9680 vertices at 4 distance > 3678 vertices at 5 distance > 1458 vertices at 6 distance > 667 vertices at 7 distance > 417 vertices at 8 distance > 237 vertices at 9 distance > 188 vertices at 10 distance > 125 vertices at 11 distance > 116 vertices at 12 distance > 70 vertices at 13 distance > 34 vertices at 14 distance > 54 vertices at 15 distance > 34 vertices at 16 distance > 32 vertices at 17 distance > 23 vertices at 18 distance 5122,5124c5173,5175 < 30 vertices at 20 distance < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.thickness < positioning took 15.1 minutes --- > 32 vertices at 20 distance > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/lh.thickness > positioning took 14.3 minutes 5126,5127c5177,5178 < #@# Surf Volume lh Tue Aug 20 14:17:22 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf --- > #@# Surf Volume lh Wed Aug 21 04:39:32 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/surf 5141,5142c5192,5193 < #@# Parcellation Stats lh Tue Aug 20 14:17:23 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Parcellation Stats lh Wed Aug 21 04:39:32 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 5147,5150c5198,5201 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... < reading input pial surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.pial... < reading input white surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... > reading input pial surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.pial... > reading input white surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... 5168,5200c5219,5252 < 1032 730 1848 2.526 0.505 0.142 0.056 12 2.4 bankssts < 3519 2505 3967 1.717 1.124 0.186 0.147 275 24.6 caudalanteriorcingulate < 2671 1864 5224 2.526 0.597 0.185 0.149 206 16.3 caudalmiddlefrontal < 2038 1269 2549 1.811 0.400 0.159 0.107 50 10.1 cuneus < 34 29 238 4.459 0.478 0.252 0.156 1 0.2 entorhinal < 4026 2793 9278 2.713 0.790 0.194 0.226 225 24.7 fusiform < 5638 3887 10867 2.468 0.647 0.202 0.333 492 37.5 inferiorparietal < 3093 2221 7762 2.712 0.824 0.218 0.181 166 23.9 inferiortemporal < 2430 1462 3167 1.928 1.013 0.162 0.110 75 7.8 isthmuscingulate < 6591 4324 10572 2.091 0.535 0.185 0.664 461 28.4 lateraloccipital < 3048 2092 6080 2.500 0.629 0.184 0.107 89 13.8 lateralorbitofrontal < 3507 2255 4715 1.900 0.630 0.172 0.093 102 13.7 lingual < 2534 1743 4831 2.348 0.726 0.193 0.113 97 12.4 medialorbitofrontal < 3233 2289 8152 2.833 0.696 0.205 0.141 149 18.3 middletemporal < 1829 1223 3068 2.316 0.436 0.131 0.054 24 4.5 paracentral < 2048 1402 3772 2.439 0.417 0.174 0.123 67 11.5 parsopercularis < 730 511 1585 2.332 0.633 0.204 0.123 29 3.5 parsorbitalis < 1992 1370 3654 2.381 0.431 0.170 0.093 51 8.0 parstriangularis < 1648 1019 1617 1.663 0.403 0.158 0.104 110 9.2 pericalcarine < 5473 3701 8866 2.063 0.545 0.163 0.202 206 27.6 postcentral < 6049 3922 5690 1.440 0.861 0.189 0.351 576 34.0 posteriorcingulate < 6405 4194 11738 2.504 0.534 0.165 0.178 248 36.1 precentral < 4766 3254 8162 2.247 0.588 0.167 0.110 185 24.7 precuneus < 2343 1558 3072 1.986 1.289 0.171 0.296 301 12.5 rostralanteriorcingulate < 6653 4613 12464 2.287 0.588 0.186 0.111 254 30.2 rostralmiddlefrontal < 9327 6429 20566 2.692 0.745 0.206 0.239 758 84.8 superiorfrontal < 8031 5374 12914 2.150 0.502 0.168 0.139 464 41.5 superiorparietal < 3629 2543 8383 2.701 0.718 0.169 0.104 137 17.4 superiortemporal < 4450 3060 8812 2.500 0.550 0.198 0.135 175 25.7 supramarginal < 314 217 916 2.881 0.804 0.267 0.263 105 2.2 frontalpole < 562 430 2990 4.142 0.585 0.238 0.134 21 3.3 temporalpole < 439 274 741 2.404 0.309 0.157 0.063 6 1.0 transversetemporal < 2805 1793 5518 2.962 0.978 0.160 0.348 571 26.0 insula --- > 964 683 1693 2.509 0.491 0.139 0.053 11 2.1 bankssts > 3472 2535 3700 1.618 1.046 0.197 0.178 237 23.3 caudalanteriorcingulate > 2670 1869 5209 2.521 0.596 0.181 0.127 129 12.0 caudalmiddlefrontal > 1990 1241 2522 1.825 0.402 0.158 0.107 49 9.9 cuneus > 438 313 1676 3.379 0.760 0.164 0.084 9 1.7 entorhinal > 3566 2493 7341 2.542 0.740 0.206 0.254 218 25.2 fusiform > 5646 3890 10915 2.470 0.643 0.201 0.333 494 37.2 inferiorparietal > 2779 1974 6948 2.701 0.806 0.210 0.177 151 20.6 inferiortemporal > 4544 2743 4645 1.600 0.943 0.170 0.157 210 24.3 isthmuscingulate > 6529 4287 10504 2.096 0.537 0.186 0.670 461 28.4 lateraloccipital > 3089 2119 6170 2.513 0.640 0.184 0.108 93 14.2 lateralorbitofrontal > 3243 2066 4221 1.858 0.575 0.175 0.095 99 13.2 lingual > 2707 1848 5219 2.376 0.746 0.194 0.114 123 13.6 medialorbitofrontal > 3261 2300 8188 2.833 0.702 0.208 0.156 181 20.6 middletemporal > 733 521 1985 3.086 0.830 0.177 0.089 22 2.5 parahippocampal > 1818 1212 3054 2.322 0.434 0.131 0.054 24 4.4 paracentral > 2054 1402 3782 2.445 0.417 0.177 0.128 70 12.1 parsopercularis > 736 513 1578 2.329 0.633 0.203 0.123 29 3.5 parsorbitalis > 2012 1384 3664 2.369 0.432 0.166 0.110 50 6.9 parstriangularis > 1655 1017 1614 1.661 0.403 0.159 0.105 111 9.4 pericalcarine > 5490 3718 8973 2.077 0.559 0.163 0.192 200 24.3 postcentral > 3619 2338 4309 1.729 0.976 0.189 0.425 416 18.1 posteriorcingulate > 6425 4205 11782 2.507 0.535 0.165 0.176 253 33.8 precentral > 4777 3258 8149 2.243 0.592 0.166 0.110 184 24.5 precuneus > 1602 1146 1822 1.892 1.370 0.164 0.368 236 8.0 rostralanteriorcingulate > 6638 4608 12480 2.289 0.589 0.187 0.112 254 30.3 rostralmiddlefrontal > 10314 7046 21673 2.581 0.862 0.203 0.247 966 107.1 superiorfrontal > 8097 5415 12973 2.146 0.502 0.168 0.145 475 45.3 superiorparietal > 3652 2557 8446 2.710 0.715 0.167 0.089 106 15.4 superiortemporal > 4316 2987 8549 2.491 0.555 0.199 0.136 172 25.1 supramarginal > 304 209 888 2.896 0.800 0.266 0.268 105 2.1 frontalpole > 564 426 2950 4.152 0.568 0.242 0.139 22 3.3 temporalpole > 441 275 744 2.405 0.309 0.157 0.063 6 1.0 transversetemporal > 2742 1750 5411 2.958 0.985 0.159 0.353 569 25.8 insula 5202,5203c5254,5255 < #@# Cortical Parc 2 lh Tue Aug 20 14:17:44 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Cortical Parc 2 lh Wed Aug 21 04:39:49 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 5205c5257 < mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 10080_3 lh ../surf/lh.sphere.reg /N/soft/cle4/freesurfer/5.1.0/average/lh.destrieux.simple.2009-07-29.gcs ../label/lh.aparc.a2009s.annot --- > mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 10080_3 lh ../surf/lh.sphere.reg /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/lh.destrieux.simple.2009-07-29.gcs ../label/lh.aparc.a2009s.annot 5211c5263 < reading atlas from /N/soft/cle4/freesurfer/5.1.0/average/lh.destrieux.simple.2009-07-29.gcs... --- > reading atlas from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/lh.destrieux.simple.2009-07-29.gcs... 5218c5270 < 686 labels changed using aseg --- > 249 labels changed using aseg 5220,5237c5272,5291 < 000: 8355 changed, 120457 examined... < 001: 2051 changed, 32152 examined... < 002: 628 changed, 10419 examined... < 003: 292 changed, 3492 examined... < 004: 136 changed, 1589 examined... < 005: 82 changed, 727 examined... < 006: 39 changed, 430 examined... < 007: 29 changed, 229 examined... < 008: 6 changed, 147 examined... < 009: 2 changed, 40 examined... < 010: 2 changed, 13 examined... < 011: 0 changed, 10 examined... < 229 labels changed using aseg < 000: 323 total segments, 243 labels (2706 vertices) changed < 001: 112 total segments, 32 labels (147 vertices) changed < 002: 83 total segments, 3 labels (11 vertices) changed < 003: 80 total segments, 0 labels (0 vertices) changed < 10 filter iterations complete (10 requested, 90 changed) --- > 000: 8296 changed, 120457 examined... > 001: 2093 changed, 31931 examined... > 002: 675 changed, 10741 examined... > 003: 293 changed, 3780 examined... > 004: 151 changed, 1614 examined... > 005: 91 changed, 836 examined... > 006: 64 changed, 505 examined... > 007: 29 changed, 339 examined... > 008: 19 changed, 154 examined... > 009: 12 changed, 103 examined... > 010: 11 changed, 73 examined... > 011: 9 changed, 53 examined... > 012: 8 changed, 46 examined... > 013: 4 changed, 32 examined... > 014: 0 changed, 23 examined... > 154 labels changed using aseg > 000: 297 total segments, 216 labels (2228 vertices) changed > 001: 93 total segments, 13 labels (52 vertices) changed > 002: 80 total segments, 0 labels (0 vertices) changed > 10 filter iterations complete (10 requested, 140 changed) 5240,5241c5294,5295 < 2631 vertices marked for relabeling... < 2631 labels changed in reclassification. --- > 2879 vertices marked for relabeling... > 2879 labels changed in reclassification. 5243c5297 < classification took 1 minutes and 37 seconds. --- > classification took 1 minutes and 4 seconds. 5245,5246c5299,5300 < #@# Parcellation Stats 2 lh Tue Aug 20 14:19:21 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Parcellation Stats 2 lh Wed Aug 21 04:40:54 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 5251,5254c5305,5308 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... < reading input pial surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.pial... < reading input white surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... > reading input pial surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.pial... > reading input white surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... 5272,5345c5326,5399 < 964 684 1766 2.158 0.633 0.204 0.136 47 5.7 G_and_S_frontomargin < 1732 1188 2875 2.109 0.451 0.185 2.213 231 7.9 G_and_S_occipital_inf < 1398 909 2593 2.367 0.471 0.148 0.060 21 3.7 G_and_S_paracentral < 1349 929 2838 2.429 0.577 0.202 0.446 45 7.1 G_and_S_subcentral < 646 451 1821 2.861 0.685 0.238 0.203 119 3.8 G_and_S_transv_frontopol < 4838 3255 7336 2.225 1.222 0.174 0.271 472 27.0 G_and_S_cingul-Ant < 3840 2831 4382 1.665 0.901 0.188 0.199 289 22.4 G_and_S_cingul-Mid-Ant < 3609 2327 3694 1.570 0.888 0.185 0.455 431 18.1 G_and_S_cingul-Mid-Post < 1121 660 1643 2.282 1.010 0.191 0.136 45 5.5 G_cingul-Post-dorsal < 719 412 726 1.588 0.847 0.161 0.163 24 2.5 G_cingul-Post-ventral < 1792 1105 2450 1.853 0.387 0.173 0.110 52 8.4 G_cuneus < 1255 877 2779 2.567 0.381 0.199 0.154 51 9.7 G_front_inf-Opercular < 400 262 911 2.596 0.396 0.198 0.116 17 2.2 G_front_inf-Orbital < 1234 858 2708 2.484 0.420 0.199 0.113 45 6.1 G_front_inf-Triangul < 3878 2737 9040 2.589 0.583 0.216 0.156 220 22.7 G_front_middle < 5989 4170 14930 2.828 0.700 0.225 0.214 462 59.5 G_front_sup < 427 290 1154 3.271 0.942 0.150 0.074 12 1.2 G_Ins_lg_and_S_cent_ins < 727 427 1958 3.637 0.890 0.202 0.949 400 11.7 G_insular_short < 1949 1258 4142 2.571 0.540 0.221 0.166 216 14.2 G_occipital_middle < 1616 1047 2564 2.121 0.555 0.177 0.097 44 6.3 G_occipital_sup < 2010 1368 4650 2.709 0.755 0.210 0.352 170 15.8 G_oc-temp_lat-fusifor < 2332 1375 3101 1.907 0.632 0.185 0.114 89 11.2 G_oc-temp_med-Lingual < 51 42 259 3.673 0.693 0.219 0.113 1 0.2 G_oc-temp_med-Parahip < 2083 1433 4848 2.611 0.687 0.211 0.132 78 10.7 G_orbital < 2118 1477 4444 2.485 0.579 0.225 0.663 193 14.9 G_pariet_inf-Angular < 2464 1772 5852 2.635 0.577 0.224 0.158 120 17.2 G_pariet_inf-Supramar < 3255 2195 6025 2.286 0.474 0.194 0.133 164 16.8 G_parietal_sup < 2222 1494 4089 2.177 0.519 0.186 0.134 86 12.4 G_postcentral < 2485 1592 5788 2.723 0.501 0.180 0.276 135 18.4 G_precentral < 2401 1626 5236 2.503 0.589 0.203 0.195 190 23.0 G_precuneus < 1025 728 2438 2.512 0.736 0.241 0.149 58 6.7 G_rectus < 40 40 90 2.496 0.536 0.171 0.045 1 0.1 G_subcallosal < 315 194 620 2.474 0.259 0.164 0.064 6 0.8 G_temp_sup-G_T_transv < 1666 1199 5365 3.147 0.709 0.227 0.141 90 10.2 G_temp_sup-Lateral < 221 149 574 3.428 0.737 0.130 0.074 3 0.4 G_temp_sup-Plan_polar < 639 448 1277 2.492 0.484 0.139 0.048 10 1.0 G_temp_sup-Plan_tempo < 1813 1318 5684 2.990 0.843 0.247 0.236 140 18.7 G_temporal_inf < 2224 1592 6312 2.976 0.689 0.232 0.178 135 15.7 G_temporal_middle < 284 195 366 2.220 0.336 0.143 0.067 4 0.8 Lat_Fis-ant-Horizont < 290 202 385 2.195 0.319 0.125 0.045 2 0.6 Lat_Fis-ant-Vertical < 806 526 985 2.290 0.407 0.156 0.092 16 2.9 Lat_Fis-post < 2154 1424 3469 2.017 0.578 0.200 0.124 73 8.8 Pole_occipital < 1346 998 5208 3.392 0.966 0.215 0.123 43 7.6 Pole_temporal < 1968 1268 2011 1.705 0.582 0.151 0.087 107 9.0 S_calcarine < 2713 1849 3229 1.990 0.571 0.133 0.072 40 7.2 S_central < 1049 734 1503 2.098 0.499 0.107 0.032 7 1.5 S_cingul-Marginalis < 497 338 774 2.431 0.558 0.138 0.091 14 2.4 S_circular_insula_ant < 1068 729 1601 2.594 0.897 0.106 0.044 9 1.9 S_circular_insula_inf < 1512 974 1913 2.318 0.455 0.161 0.179 163 14.5 S_circular_insula_sup < 734 541 1861 2.924 0.808 0.158 0.056 11 1.9 S_collat_transv_ant < 455 305 500 1.751 0.363 0.149 0.054 5 1.1 S_collat_transv_post < 1716 1149 2377 2.085 0.459 0.138 0.069 30 4.8 S_front_inf < 1233 844 1653 2.030 0.432 0.136 0.055 37 2.8 S_front_middle < 1874 1248 2981 2.413 0.588 0.166 0.189 210 22.0 S_front_sup < 211 141 375 2.296 0.486 0.117 0.033 2 0.3 S_interm_prim-Jensen < 2685 1816 3734 2.102 0.443 0.137 0.126 211 7.0 S_intrapariet_and_P_trans < 653 444 749 1.787 0.351 0.134 0.045 6 1.2 S_oc_middle_and_Lunatus < 1313 901 1703 1.944 0.421 0.137 0.054 14 2.9 S_oc_sup_and_transversal < 558 363 736 2.144 0.565 0.150 0.069 10 1.7 S_occipital_ant < 494 346 910 2.583 0.680 0.193 0.156 16 3.3 S_oc-temp_lat < 1020 763 1713 2.270 0.615 0.165 0.074 23 3.0 S_oc-temp_med_and_Lingual < 499 351 792 1.959 0.560 0.190 0.128 20 2.5 S_orbital_lateral < 478 318 683 2.021 0.747 0.152 0.063 6 1.2 S_orbital_med-olfact < 913 640 1629 2.310 0.614 0.167 0.079 19 3.0 S_orbital-H_Shaped < 1845 1210 2266 1.990 0.486 0.140 0.070 30 6.7 S_parieto_occipital < 2493 1512 2026 1.328 0.873 0.176 0.133 115 13.8 S_pericallosal < 2573 1675 3327 2.048 0.431 0.143 0.172 136 20.0 S_postcentral < 1076 694 1470 2.377 0.473 0.166 0.164 45 7.5 S_precentral-inf-part < 927 626 1262 2.303 0.330 0.109 0.043 16 1.3 S_precentral-sup-part < 894 588 1346 2.188 0.640 0.159 0.085 42 3.4 S_suborbital < 852 594 1197 2.001 0.404 0.132 0.037 7 1.4 S_subparietal < 834 573 1192 2.245 0.557 0.166 0.103 16 2.9 S_temporal_inf < 3731 2534 6418 2.467 0.644 0.167 0.132 266 24.3 S_temporal_sup < 292 213 471 2.306 0.404 0.161 0.045 4 0.6 S_temporal_transverse --- > 995 703 1806 2.149 0.607 0.206 0.132 49 5.7 G_and_S_frontomargin > 1663 1139 2792 2.123 0.453 0.186 2.303 230 7.8 G_and_S_occipital_inf > 1473 964 2740 2.357 0.483 0.148 0.060 22 3.8 G_and_S_paracentral > 1335 930 2801 2.416 0.586 0.204 0.452 42 7.0 G_and_S_subcentral > 651 456 1827 2.855 0.688 0.240 0.203 119 3.8 G_and_S_transv_frontopol > 5123 3470 7589 2.179 1.221 0.173 0.259 477 27.5 G_and_S_cingul-Ant > 3627 2545 4048 1.670 0.909 0.184 0.203 289 21.7 G_and_S_cingul-Mid-Ant > 1875 1183 2619 2.080 0.850 0.173 0.680 261 8.8 G_and_S_cingul-Mid-Post > 1459 866 2048 2.113 1.069 0.184 0.127 67 7.1 G_cingul-Post-dorsal > 1100 649 989 1.443 0.732 0.152 0.115 31 3.0 G_cingul-Post-ventral > 1804 1108 2460 1.848 0.390 0.173 0.110 53 8.5 G_cuneus > 1289 889 2867 2.593 0.348 0.200 0.151 55 9.8 G_front_inf-Opercular > 294 192 667 2.595 0.433 0.198 0.132 15 1.8 G_front_inf-Orbital > 1240 871 2722 2.471 0.418 0.199 0.140 42 4.9 G_front_inf-Triangul > 3844 2711 8944 2.590 0.582 0.217 0.157 221 22.6 G_front_middle > 6061 4223 15143 2.830 0.705 0.225 0.243 507 74.1 G_front_sup > 372 253 1086 3.394 0.943 0.142 0.070 7 0.9 G_Ins_lg_and_S_cent_ins > 699 416 1859 3.611 0.912 0.207 0.969 398 11.2 G_insular_short > 2012 1305 4247 2.563 0.547 0.219 0.165 218 14.5 G_occipital_middle > 1610 1040 2560 2.130 0.546 0.176 0.096 44 6.2 G_occipital_sup > 1720 1145 3862 2.637 0.752 0.220 0.410 160 15.6 G_oc-temp_lat-fusifor > 2112 1256 2758 1.867 0.606 0.186 0.111 82 10.0 G_oc-temp_med-Lingual > 930 629 2788 3.160 0.823 0.158 0.069 16 2.7 G_oc-temp_med-Parahip > 2191 1511 5144 2.617 0.695 0.212 0.137 82 11.9 G_orbital > 2099 1468 4414 2.489 0.578 0.226 0.668 193 15.0 G_pariet_inf-Angular > 2347 1694 5606 2.628 0.578 0.227 0.162 118 16.6 G_pariet_inf-Supramar > 3292 2209 6085 2.283 0.478 0.195 0.144 178 19.4 G_parietal_sup > 2242 1513 4149 2.181 0.534 0.186 0.136 86 12.5 G_postcentral > 2457 1579 5726 2.716 0.502 0.181 0.275 132 17.7 G_precentral > 2371 1611 5177 2.500 0.583 0.198 0.174 159 19.6 G_precuneus > 1082 761 2531 2.512 0.745 0.238 0.147 56 6.7 G_rectus > 75 55 139 2.788 0.396 0.135 0.063 1 0.2 G_subcallosal > 315 195 621 2.476 0.262 0.163 0.063 5 0.8 G_temp_sup-G_T_transv > 1689 1207 5374 3.161 0.711 0.225 0.139 90 10.3 G_temp_sup-Lateral > 300 205 780 3.199 0.854 0.142 0.084 10 0.9 G_temp_sup-Plan_polar > 638 447 1237 2.459 0.505 0.134 0.047 9 1.0 G_temp_sup-Plan_tempo > 1620 1169 5061 2.975 0.842 0.237 0.231 116 15.5 G_temporal_inf > 2215 1579 6326 3.002 0.692 0.235 0.182 137 16.0 G_temporal_middle > 271 186 345 2.213 0.344 0.146 0.070 4 0.8 Lat_Fis-ant-Horizont > 345 236 475 2.237 0.327 0.126 0.074 8 1.4 Lat_Fis-ant-Vertical > 780 514 953 2.279 0.410 0.157 0.093 16 2.9 Lat_Fis-post > 2101 1391 3412 2.014 0.586 0.200 0.126 72 8.7 Pole_occipital > 1264 974 5088 3.384 0.982 0.234 0.149 49 8.8 Pole_temporal > 1942 1256 1999 1.717 0.576 0.152 0.088 106 9.1 S_calcarine > 2725 1853 3256 1.998 0.577 0.133 0.072 40 7.2 S_central > 977 690 1353 2.054 0.470 0.105 0.031 5 1.4 S_cingul-Marginalis > 530 353 851 2.525 0.653 0.135 0.085 14 2.4 S_circular_insula_ant > 1045 715 1546 2.582 0.886 0.104 0.040 7 1.5 S_circular_insula_inf > 1548 997 2001 2.326 0.486 0.159 0.176 163 14.6 S_circular_insula_sup > 541 396 1007 2.539 0.666 0.193 0.098 23 2.8 S_collat_transv_ant > 337 227 366 1.701 0.363 0.148 0.056 3 0.8 S_collat_transv_post > 1702 1134 2328 2.080 0.465 0.137 0.068 30 4.7 S_front_inf > 1263 870 1715 2.030 0.428 0.135 0.055 37 2.8 S_front_middle > 1881 1253 2987 2.408 0.580 0.166 0.172 204 19.8 S_front_sup > 188 127 358 2.389 0.524 0.132 0.046 3 0.5 S_interm_prim-Jensen > 2575 1741 3536 2.101 0.437 0.138 0.129 210 6.8 S_intrapariet_and_P_trans > 695 472 784 1.777 0.320 0.140 0.047 7 1.5 S_oc_middle_and_Lunatus > 1325 911 1712 1.931 0.421 0.138 0.054 14 2.9 S_oc_sup_and_transversal > 496 328 678 2.162 0.543 0.143 0.062 8 1.2 S_occipital_ant > 435 314 706 2.321 0.496 0.171 0.104 9 2.0 S_oc-temp_lat > 1424 1037 2348 2.329 0.645 0.171 0.086 42 5.2 S_oc-temp_med_and_Lingual > 449 315 726 1.969 0.541 0.182 0.131 19 2.3 S_orbital_lateral > 474 316 645 1.995 0.686 0.150 0.057 10 1.2 S_orbital_med-olfact > 925 649 1652 2.313 0.623 0.168 0.078 19 3.0 S_orbital-H_Shaped > 1835 1204 2246 1.985 0.482 0.139 0.070 30 6.6 S_parieto_occipital > 3552 2348 2698 1.215 0.775 0.197 0.190 265 23.9 S_pericallosal > 2622 1695 3394 2.064 0.433 0.144 0.170 138 20.3 S_postcentral > 1077 698 1501 2.396 0.476 0.166 0.160 52 5.6 S_precentral-inf-part > 920 616 1230 2.298 0.323 0.109 0.045 17 1.5 S_precentral-sup-part > 763 504 1107 2.106 0.605 0.157 0.083 38 3.0 S_suborbital > 836 581 1161 2.000 0.401 0.132 0.037 7 1.3 S_subparietal > 783 543 1115 2.221 0.506 0.158 0.086 13 2.5 S_temporal_inf > 3742 2537 6429 2.466 0.641 0.168 0.132 270 24.2 S_temporal_sup > 298 215 480 2.317 0.403 0.161 0.045 4 0.6 S_temporal_transverse 5347,5348c5401,5402 < #@# Tessellate rh Tue Aug 20 14:19:48 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Tessellate rh Wed Aug 21 04:41:13 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 5445c5499 < #@# Smooth1 rh Tue Aug 20 14:20:02 EDT 2013 --- > #@# Smooth1 rh Wed Aug 21 04:41:26 EDT 2013 5449c5503 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 5454c5508 < #@# Inflation1 rh Tue Aug 20 14:20:07 EDT 2013 --- > #@# Inflation1 rh Wed Aug 21 04:41:32 EDT 2013 5458c5512 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 5461c5515 < inflation took 0.7 minutes --- > inflation took 0.9 minutes 5467,5468c5521,5522 < #@# QSphere rh Tue Aug 20 14:20:51 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# QSphere rh Wed Aug 21 04:42:24 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 5567c5621 < spherical transformation took 0.08 hours --- > spherical transformation took 0.10 hours 5570c5624 < #@# Fix Topology rh Tue Aug 20 14:25:43 EDT 2013 --- > #@# Fix Topology rh Wed Aug 21 04:48:35 EDT 2013 5577c5631 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 5631c5685 < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.qsphere.nofix... --- > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.qsphere.nofix... 6059c6113 < writing corrected surface to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.orig... --- > writing corrected surface to /N/dc/projects/shenlab/subjects/10080_3/surf/rh.orig... 6062c6116 < topology fixing took 101.1 minutes --- > topology fixing took 104.2 minutes 6075c6129 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 6088,6089c6142,6143 < #@# Make White Surf rh Tue Aug 20 16:06:59 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Make White Surf rh Wed Aug 21 06:32:52 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6099,6101c6153,6155 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/filled.mgz... < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/brain.finalsurfs.mgz... < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/filled.mgz... > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/brain.finalsurfs.mgz... > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... 6104c6158 < reading original surface position from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.orig... --- > reading original surface position from /N/dc/projects/shenlab/subjects/10080_3/surf/rh.orig... 6106,6107c6160,6161 < border white: 244744 voxels (1.46%) < border gray 258501 voxels (1.54%) --- > border white: 244740 voxels (1.46%) > border gray 258458 voxels (1.54%) 6118c6172 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.mgz... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.mgz... 6134c6188 < tol=1.0e-04, sigma=2.0, host=nid00, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=2.0, host=q0190, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6141c6195 < 4239 vertices more than 2 sigmas from mean. --- > 4249 vertices more than 2 sigmas from mean. 6143,6154c6197,6208 < 000: dt: 0.0000, sse=6129608.5, rms=12.73 < 001: dt: 0.5000, sse=6463718.5, rms=8.81 < 002: dt: 0.5000, sse=6733336.5, rms=6.76 < 003: dt: 0.5000, sse=7181089.5, rms=5.73 < 004: dt: 0.5000, sse=7313354.5, rms=5.13 < 005: dt: 0.5000, sse=7496779.0, rms=4.76 < 006: dt: 0.5000, sse=7523431.0, rms=4.52 < 007: dt: 0.5000, sse=7579276.5, rms=4.35 < 008: dt: 0.5000, sse=7524969.0, rms=4.24 < 009: dt: 0.5000, sse=7574664.5, rms=4.15 < 010: dt: 0.5000, sse=7488740.5, rms=4.09 < 011: dt: 0.5000, sse=7551650.5, rms=4.03 --- > 000: dt: 0.0000, sse=6129636.0, rms=12.73 > 001: dt: 0.5000, sse=6463588.0, rms=8.81 > 002: dt: 0.5000, sse=6733242.0, rms=6.76 > 003: dt: 0.5000, sse=7181034.5, rms=5.73 > 004: dt: 0.5000, sse=7313165.5, rms=5.13 > 005: dt: 0.5000, sse=7496615.0, rms=4.76 > 006: dt: 0.5000, sse=7523592.0, rms=4.52 > 007: dt: 0.5000, sse=7579122.0, rms=4.35 > 008: dt: 0.5000, sse=7525049.5, rms=4.24 > 009: dt: 0.5000, sse=7576536.5, rms=4.15 > 010: dt: 0.5000, sse=7489611.0, rms=4.09 > 011: dt: 0.5000, sse=7551175.0, rms=4.03 6156,6158c6210,6212 < 012: dt: 0.5000, sse=7485470.0, rms=4.00 < 013: dt: 0.2500, sse=5160041.5, rms=3.13 < 014: dt: 0.2500, sse=4884008.0, rms=2.94 --- > 012: dt: 0.5000, sse=7480502.0, rms=4.00 > 013: dt: 0.2500, sse=5159078.5, rms=3.13 > 014: dt: 0.2500, sse=4883335.5, rms=2.94 6160,6161c6214,6215 < 015: dt: 0.2500, sse=4691254.0, rms=2.91 < 016: dt: 0.1250, sse=4516336.5, rms=2.75 --- > 015: dt: 0.2500, sse=4691403.0, rms=2.91 > 016: dt: 0.1250, sse=4516584.5, rms=2.75 6163,6164c6217,6218 < 017: dt: 0.1250, sse=4468974.0, rms=2.72 < positioning took 2.8 minutes --- > 017: dt: 0.1250, sse=4468643.5, rms=2.72 > positioning took 2.2 minutes 6168c6222 < mean border=81.3, 596 (196) missing vertices, mean dist -0.2 [0.6 (%63.5)->0.3 (%36.5))] --- > mean border=81.3, 598 (196) missing vertices, mean dist -0.2 [0.6 (%63.5)->0.3 (%36.5))] 6170c6224 < tol=1.0e-04, sigma=1.0, host=nid00, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=1.0, host=q0190, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6177c6231 < 3340 vertices more than 2 sigmas from mean. --- > 3349 vertices more than 2 sigmas from mean. 6179,6180c6233,6234 < 000: dt: 0.0000, sse=4847200.0, rms=4.55 < 018: dt: 0.5000, sse=5421957.0, rms=3.61 --- > 000: dt: 0.0000, sse=4846806.5, rms=4.55 > 018: dt: 0.5000, sse=5421462.0, rms=3.61 6182,6185c6236,6239 < 019: dt: 0.2500, sse=5014502.5, rms=2.98 < 020: dt: 0.2500, sse=4930234.0, rms=2.65 < 021: dt: 0.2500, sse=4853852.0, rms=2.55 < 022: dt: 0.2500, sse=4828346.5, rms=2.50 --- > 019: dt: 0.2500, sse=5014424.0, rms=2.98 > 020: dt: 0.2500, sse=4931057.0, rms=2.65 > 021: dt: 0.2500, sse=4854214.5, rms=2.55 > 022: dt: 0.2500, sse=4827752.5, rms=2.49 6187,6188c6241,6242 < 023: dt: 0.2500, sse=4808017.0, rms=2.48 < 024: dt: 0.1250, sse=4711642.5, rms=2.33 --- > 023: dt: 0.2500, sse=4806599.5, rms=2.48 > 024: dt: 0.1250, sse=4713553.0, rms=2.33 6190,6191c6244,6245 < 025: dt: 0.1250, sse=4687575.5, rms=2.31 < positioning took 1.2 minutes --- > 025: dt: 0.1250, sse=4689753.5, rms=2.31 > positioning took 1.1 minutes 6199c6253 < mean border=83.8, 528 (163) missing vertices, mean dist -0.2 [0.4 (%68.4)->0.2 (%31.6))] --- > mean border=83.8, 546 (168) missing vertices, mean dist -0.2 [0.4 (%68.4)->0.2 (%31.6))] 6201c6255 < tol=1.0e-04, sigma=0.5, host=nid00, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=0.5, host=q0190, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6208c6262 < 3223 vertices more than 2 sigmas from mean. --- > 3229 vertices more than 2 sigmas from mean. 6210,6211c6264,6265 < 000: dt: 0.0000, sse=4909379.5, rms=3.96 < 026: dt: 0.5000, sse=5279750.0, rms=3.29 --- > 000: dt: 0.0000, sse=4914985.0, rms=3.96 > 026: dt: 0.5000, sse=5285173.0, rms=3.29 6213,6220c6267,6274 < 027: dt: 0.2500, sse=4975615.5, rms=2.55 < 028: dt: 0.2500, sse=5024273.0, rms=2.30 < rms = 2.26, time step reduction 2 of 3 to 0.125... < 029: dt: 0.2500, sse=4985564.0, rms=2.26 < 030: dt: 0.1250, sse=4867354.5, rms=2.07 < rms = 2.05, time step reduction 3 of 3 to 0.062... < 031: dt: 0.1250, sse=4837052.0, rms=2.05 < positioning took 0.9 minutes --- > 027: dt: 0.2500, sse=4981748.0, rms=2.55 > 028: dt: 0.2500, sse=5031693.0, rms=2.31 > rms = 2.27, time step reduction 2 of 3 to 0.125... > 029: dt: 0.2500, sse=4992889.5, rms=2.27 > 030: dt: 0.1250, sse=4873961.5, rms=2.08 > rms = 2.06, time step reduction 3 of 3 to 0.062... > 031: dt: 0.1250, sse=4843772.5, rms=2.06 > positioning took 0.8 minutes 6231c6285 < mean border=84.7, 554 (147) missing vertices, mean dist -0.1 [0.3 (%56.3)->0.2 (%43.7))] --- > mean border=84.7, 571 (151) missing vertices, mean dist -0.1 [0.3 (%56.3)->0.2 (%43.7))] 6233c6287 < tol=1.0e-04, sigma=0.2, host=nid00, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=0.2, host=q0190, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6236c6290 < writing white matter surface to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... --- > writing white matter surface to /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... 6238c6292 < 000: dt: 0.0000, sse=4862434.0, rms=2.39 --- > 000: dt: 0.0000, sse=4867775.0, rms=2.39 6240,6242c6294,6296 < 032: dt: 0.2500, sse=5037058.5, rms=1.92 < 033: dt: 0.2500, sse=5380997.0, rms=1.71 < rms = 1.78, time step reduction 2 of 3 to 0.125... --- > 032: dt: 0.2500, sse=5044496.5, rms=1.92 > 033: dt: 0.2500, sse=5388895.5, rms=1.71 > rms = 1.79, time step reduction 2 of 3 to 0.125... 6244,6245c6298,6299 < 034: dt: 0.1250, sse=5368366.0, rms=1.67 < positioning took 0.6 minutes --- > 034: dt: 0.1250, sse=5376709.5, rms=1.67 > positioning took 0.5 minutes 6264,6266c6318,6320 < writing cortex label to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/rh.cortex.label... < LabelWrite: saving to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/rh.cortex.label < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.curv --- > writing cortex label to /N/dc/projects/shenlab/subjects/10080_3/label/rh.cortex.label... > LabelWrite: saving to /N/dc/projects/shenlab/subjects/10080_3/label/rh.cortex.label > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/rh.curv 6268c6322 < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.area --- > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/rh.area 6271c6325 < refinement took 8.3 minutes --- > refinement took 7.2 minutes 6273c6327 < #@# Smooth2 rh Tue Aug 20 16:15:16 EDT 2013 --- > #@# Smooth2 rh Wed Aug 21 06:40:02 EDT 2013 6277c6331 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > /N/dc/projects/shenlab/subjects/10080_3/scripts 6283,6284c6337,6338 < #@# Inflation2 rh Tue Aug 20 16:15:21 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Inflation2 rh Wed Aug 21 06:40:07 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6288c6342 < avg radius = 44.4 mm, total surface area = 71397 mm^2 --- > avg radius = 44.4 mm, total surface area = 71400 mm^2 6293c6347 < inflation took 0.7 minutes --- > inflation took 0.8 minutes 6300,6303c6354,6357 < 290 vertices thresholded to be in k1 ~ [-0.75 0.61], k2 ~ [-0.14 0.12] < total integrated curvature = 0.127*4pi (1.598) --> 1 handles < ICI = 1.3, FI = 9.9, variation=169.264 < 167 vertices thresholded to be in [-0.04 0.03] --- > 281 vertices thresholded to be in k1 ~ [-0.93 0.54], k2 ~ [-0.14 0.12] > total integrated curvature = 0.129*4pi (1.617) --> 1 handles > ICI = 1.3, FI = 9.9, variation=169.498 > 176 vertices thresholded to be in [-0.04 0.03] 6306c6360 < 134 vertices thresholded to be in [-0.33 0.28] --- > 143 vertices thresholded to be in [-0.40 0.26] 6308c6362 < writing mean curvature to ../surf/rh.inflated.H...curvature mean = -0.017, std = 0.027 --- > writing mean curvature to ../surf/rh.inflated.H...curvature mean = -0.017, std = 0.028 6312,6313c6366,6367 < #@# Curvature Stats rh Tue Aug 20 16:17:37 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf --- > #@# Curvature Stats rh Wed Aug 21 06:42:42 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/surf 6331c6385 < deltaViolations [ 254 ] --- > deltaViolations [ 251 ] 6334c6388 < WARN: S lookup min: -2.095768 --- > WARN: S lookup min: -2.096012 6337,6338c6391,6392 < #@# Sphere rh Tue Aug 20 16:17:42 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Sphere rh Wed Aug 21 06:42:48 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6349c6403 < spherical transformation took 0.96 hours --- > spherical transformation took 1.28 hours 6351,6352c6405,6406 < pass 1: epoch 1 of 3 starting distance error %19.27 < pass 1: epoch 2 of 3 starting distance error %19.26 --- > pass 1: epoch 1 of 3 starting distance error %19.28 > pass 1: epoch 2 of 3 starting distance error %19.25 6354c6408 < starting distance error %19.14 --- > starting distance error %19.13 6356c6410 < final distance error %19.17 --- > final distance error %19.16 6358,6359c6412,6413 < #@# Surf Reg rh Tue Aug 20 17:15:34 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Surf Reg rh Wed Aug 21 07:59:41 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6361c6415 < mris_register -curv ../surf/rh.sphere /N/soft/cle4/freesurfer/5.1.0/average/rh.average.curvature.filled.buckner40.tif ../surf/rh.sphere.reg --- > mris_register -curv ../surf/rh.sphere /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/rh.average.curvature.filled.buckner40.tif ../surf/rh.sphere.reg 6367c6421 < reading template parameterization from /N/soft/cle4/freesurfer/5.1.0/average/rh.average.curvature.filled.buckner40.tif... --- > reading template parameterization from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/rh.average.curvature.filled.buckner40.tif... 6369,6370c6423,6424 < curvature mean = -0.000, std = 0.624 < curvature mean = 0.035, std = 0.936 --- > curvature mean = 0.000, std = 0.624 > curvature mean = 0.039, std = 0.938 6372,6377c6426,6431 < curvature mean = 0.022, std = 0.958 < curvature mean = 0.003, std = 0.933 < curvature mean = 0.018, std = 0.974 < curvature mean = -0.000, std = 0.963 < curvature mean = 0.018, std = 0.977 < curvature mean = -0.000, std = 0.980 --- > curvature mean = 0.021, std = 0.964 > curvature mean = 0.001, std = 0.936 > curvature mean = 0.019, std = 0.977 > curvature mean = -0.000, std = 0.966 > curvature mean = 0.019, std = 0.981 > curvature mean = -0.000, std = 0.982 6379,6380c6433,6434 < curvature mean = 0.005, std = 0.071 < curvature mean = 0.029, std = 0.152 --- > curvature mean = 0.006, std = 0.070 > curvature mean = 0.028, std = 0.151 6382,6386c6436,6440 < curvature mean = 0.017, std = 0.230 < curvature mean = 0.005, std = 0.091 < curvature mean = 0.008, std = 0.306 < curvature mean = 0.006, std = 0.094 < curvature mean = 0.002, std = 0.401 --- > curvature mean = 0.018, std = 0.227 > curvature mean = 0.006, std = 0.090 > curvature mean = 0.009, std = 0.304 > curvature mean = 0.006, std = 0.093 > curvature mean = 0.003, std = 0.400 6389c6443 < #@# Jacobian white rh Tue Aug 20 17:58:59 EDT 2013 --- > #@# Jacobian white rh Wed Aug 21 08:56:45 EDT 2013 6396,6397c6450,6451 < #@# AvgCurv rh Tue Aug 20 17:59:01 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# AvgCurv rh Wed Aug 21 08:56:48 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6399c6453 < mrisp_paint -a 5 /N/soft/cle4/freesurfer/5.1.0/average/rh.average.curvature.filled.buckner40.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv --- > mrisp_paint -a 5 /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/rh.average.curvature.filled.buckner40.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv 6403c6457 < reading template parameterization from /N/soft/cle4/freesurfer/5.1.0/average/rh.average.curvature.filled.buckner40.tif... --- > reading template parameterization from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/rh.average.curvature.filled.buckner40.tif... 6406,6407c6460,6461 < #@# Cortical Parc rh Tue Aug 20 17:59:03 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Cortical Parc rh Wed Aug 21 08:56:50 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6409c6463 < mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 10080_3 rh ../surf/rh.sphere.reg /N/soft/cle4/freesurfer/5.1.0/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot --- > mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 10080_3 rh ../surf/rh.sphere.reg /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot 6415c6469 < reading atlas from /N/soft/cle4/freesurfer/5.1.0/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... --- > reading atlas from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... 6421c6475 < 1355 labels changed using aseg --- > 1158 labels changed using aseg 6423,6435c6477,6488 < 000: 2654 changed, 120643 examined... < 001: 622 changed, 11388 examined... < 002: 159 changed, 3362 examined... < 003: 61 changed, 925 examined... < 004: 26 changed, 346 examined... < 005: 13 changed, 147 examined... < 006: 4 changed, 71 examined... < 007: 4 changed, 25 examined... < 008: 2 changed, 19 examined... < 009: 0 changed, 13 examined... < 164 labels changed using aseg < 000: 133 total segments, 95 labels (584 vertices) changed < 001: 43 total segments, 5 labels (9 vertices) changed --- > 000: 2597 changed, 120643 examined... > 001: 566 changed, 11299 examined... > 002: 129 changed, 3135 examined... > 003: 43 changed, 747 examined... > 004: 26 changed, 259 examined... > 005: 7 changed, 145 examined... > 006: 5 changed, 37 examined... > 007: 3 changed, 32 examined... > 008: 0 changed, 22 examined... > 142 labels changed using aseg > 000: 125 total segments, 87 labels (552 vertices) changed > 001: 41 total segments, 3 labels (5 vertices) changed 6437c6490 < 10 filter iterations complete (10 requested, 60 changed) --- > 10 filter iterations complete (10 requested, 49 changed) 6441,6442c6494,6495 < 1466 vertices marked for relabeling... < 1466 labels changed in reclassification. --- > 1349 vertices marked for relabeling... > 1349 labels changed in reclassification. 6444c6497 < classification took 1 minutes and 14 seconds. --- > classification took 0 minutes and 56 seconds. 6446,6447c6499,6500 < #@# Make Pial Surf rh Tue Aug 20 18:00:17 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Make Pial Surf rh Wed Aug 21 08:57:47 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6456,6458c6509,6511 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/filled.mgz... < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/brain.finalsurfs.mgz... < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/filled.mgz... > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/brain.finalsurfs.mgz... > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... 6461c6514 < reading original surface position from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.orig... --- > reading original surface position from /N/dc/projects/shenlab/subjects/10080_3/surf/rh.orig... 6463,6464c6516,6517 < border white: 244744 voxels (1.46%) < border gray 258501 voxels (1.54%) --- > border white: 244740 voxels (1.46%) > border gray 258458 voxels (1.54%) 6482c6535 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.mgz... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.mgz... 6497c6550 < tol=1.0e-04, sigma=2.0, host=nid00, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=2.0, host=q0190, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6501,6502c6554,6555 < vertex spacing 0.90 +- 0.29 (0.04-->6.01) (max @ vno 101402 --> 120476) < face area 0.27 +- 0.15 (0.00-->2.62) --- > vertex spacing 0.90 +- 0.30 (0.04-->5.98) (max @ vno 101402 --> 120476) > face area 0.27 +- 0.15 (0.00-->2.65) 6504c6557 < 4351 vertices more than 2 sigmas from mean. --- > 4338 vertices more than 2 sigmas from mean. 6506,6527c6559,6581 < 000: dt: 0.0000, sse=6299300.0, rms=12.93 < 001: dt: 0.5000, sse=6623031.5, rms=9.06 < 002: dt: 0.5000, sse=6874906.0, rms=7.04 < 003: dt: 0.5000, sse=7317335.5, rms=6.01 < 004: dt: 0.5000, sse=7439096.0, rms=5.42 < 005: dt: 0.5000, sse=7624232.5, rms=5.03 < 006: dt: 0.5000, sse=7643338.5, rms=4.77 < 007: dt: 0.5000, sse=7706909.5, rms=4.58 < 008: dt: 0.5000, sse=7648848.0, rms=4.43 < 009: dt: 0.5000, sse=7703995.5, rms=4.32 < 010: dt: 0.5000, sse=7614023.5, rms=4.24 < 011: dt: 0.5000, sse=7676740.5, rms=4.17 < rms = 4.12, time step reduction 1 of 3 to 0.250... < 012: dt: 0.5000, sse=7608975.0, rms=4.12 < 013: dt: 0.2500, sse=5251298.0, rms=3.28 < 014: dt: 0.2500, sse=4974176.5, rms=3.08 < rms = 3.05, time step reduction 2 of 3 to 0.125... < 015: dt: 0.2500, sse=4780363.0, rms=3.05 < 016: dt: 0.1250, sse=4598076.5, rms=2.88 < rms = 2.85, time step reduction 3 of 3 to 0.062... < 017: dt: 0.1250, sse=4546994.5, rms=2.85 < positioning took 2.0 minutes --- > 000: dt: 0.0000, sse=6299327.5, rms=12.93 > 001: dt: 0.5000, sse=6622901.0, rms=9.06 > 002: dt: 0.5000, sse=6874811.0, rms=7.04 > 003: dt: 0.5000, sse=7317280.0, rms=6.01 > 004: dt: 0.5000, sse=7438907.0, rms=5.42 > 005: dt: 0.5000, sse=7624068.5, rms=5.03 > 006: dt: 0.5000, sse=7643499.5, rms=4.77 > 007: dt: 0.5000, sse=7706755.0, rms=4.58 > 008: dt: 0.5000, sse=7648929.5, rms=4.43 > 009: dt: 0.5000, sse=7705868.0, rms=4.32 > 010: dt: 0.5000, sse=7614895.0, rms=4.24 > 011: dt: 0.5000, sse=7676260.5, rms=4.17 > 012: dt: 0.5000, sse=7604228.5, rms=4.12 > rms = 4.08, time step reduction 1 of 3 to 0.250... > 013: dt: 0.5000, sse=7648167.5, rms=4.08 > 014: dt: 0.2500, sse=5215187.5, rms=3.25 > 015: dt: 0.2500, sse=4964465.0, rms=3.03 > rms = 3.00, time step reduction 2 of 3 to 0.125... > 016: dt: 0.2500, sse=4761339.0, rms=3.00 > 017: dt: 0.1250, sse=4586886.0, rms=2.83 > rms = 2.81, time step reduction 3 of 3 to 0.062... > 018: dt: 0.1250, sse=4540080.5, rms=2.81 > positioning took 2.3 minutes 6529c6583 < deleting segment 0 with 864 points - only 26.62% unknown --- > deleting segment 0 with 1059 points - only 33.81% unknown 6532,6534c6586,6589 < deleting segment 7 with 361 points - only 0.00% unknown < deleting segment 8 with 10 points - only 0.00% unknown < deleting segment 10 with 15 points - only 0.00% unknown --- > deleting segment 6 with 361 points - only 0.00% unknown > deleting segment 7 with 10 points - only 0.00% unknown > deleting segment 9 with 11 points - only 0.00% unknown > deleting segment 10 with 8 points - only 0.00% unknown 6539,6542c6594,6597 < deleting segment 16 with 11 points - only 0.00% unknown < deleting segment 17 with 13 points - only 0.00% unknown < deleting segment 19 with 167 points - only 17.96% unknown < mean border=81.4, 932 (218) missing vertices, mean dist -0.2 [0.6 (%63.5)->0.3 (%36.5))] --- > deleting segment 17 with 11 points - only 0.00% unknown > deleting segment 18 with 13 points - only 0.00% unknown > deleting segment 20 with 161 points - only 18.63% unknown > mean border=81.4, 912 (210) missing vertices, mean dist -0.2 [0.6 (%63.4)->0.3 (%36.6))] 6544c6599 < tol=1.0e-04, sigma=1.0, host=nid00, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=1.0, host=q0190, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6548,6549c6603,6604 < vertex spacing 0.89 +- 0.29 (0.05-->5.91) (max @ vno 101402 --> 120476) < face area 0.34 +- 0.18 (0.00-->3.52) --- > vertex spacing 0.90 +- 0.29 (0.05-->5.89) (max @ vno 101402 --> 120476) > face area 0.34 +- 0.18 (0.00-->3.56) 6551c6606 < 3415 vertices more than 2 sigmas from mean. --- > 3421 vertices more than 2 sigmas from mean. 6553,6562c6608,6617 < 000: dt: 0.0000, sse=4971295.0, rms=4.71 < 018: dt: 0.5000, sse=5540991.5, rms=3.79 < rms = 3.81, time step reduction 1 of 3 to 0.250... < 019: dt: 0.2500, sse=5129189.0, rms=3.18 < 020: dt: 0.2500, sse=5044747.5, rms=2.86 < 021: dt: 0.2500, sse=4968982.5, rms=2.74 < 022: dt: 0.2500, sse=4943276.0, rms=2.67 < rms = 2.64, time step reduction 2 of 3 to 0.125... < 023: dt: 0.2500, sse=4923802.0, rms=2.64 < 024: dt: 0.1250, sse=4826864.5, rms=2.49 --- > 000: dt: 0.0000, sse=4977551.5, rms=4.71 > 019: dt: 0.5000, sse=5503635.5, rms=3.78 > rms = 3.82, time step reduction 1 of 3 to 0.250... > 020: dt: 0.2500, sse=5117146.5, rms=3.19 > 021: dt: 0.2500, sse=5039839.0, rms=2.87 > 022: dt: 0.2500, sse=4958209.5, rms=2.75 > 023: dt: 0.2500, sse=4957921.0, rms=2.69 > rms = 2.65, time step reduction 2 of 3 to 0.125... > 024: dt: 0.2500, sse=4937653.5, rms=2.65 > 025: dt: 0.1250, sse=4834915.0, rms=2.50 6564,6565c6619,6620 < 025: dt: 0.1250, sse=4802180.0, rms=2.47 < positioning took 1.0 minutes --- > 026: dt: 0.1250, sse=4809024.0, rms=2.47 > positioning took 1.1 minutes 6567c6622 < deleting segment 0 with 902 points - only 25.83% unknown --- > deleting segment 0 with 901 points - only 25.19% unknown 6570,6571c6625,6626 < deleting segment 3 with 388 points - only 0.00% unknown < deleting segment 4 with 11 points - only 0.00% unknown --- > deleting segment 3 with 390 points - only 0.00% unknown > deleting segment 4 with 10 points - only 0.00% unknown 6575c6630 < deleting segment 9 with 47 points - only 0.00% unknown --- > deleting segment 9 with 52 points - only 0.00% unknown 6577,6582c6632 < deleting segment 12 with 10 points - only 0.00% unknown < removing 2 vertex label from ripped group < deleting segment 13 with 2 points - only 0.00% unknown < deleting segment 14 with 13 points - only 0.00% unknown < removing 3 vertex label from ripped group < deleting segment 15 with 3 points - only 0.00% unknown --- > deleting segment 11 with 13 points - only 0.00% unknown 6584,6586c6634,6636 < deleting segment 16 with 4 points - only 0.00% unknown < deleting segment 17 with 167 points - only 17.96% unknown < mean border=83.8, 861 (166) missing vertices, mean dist -0.2 [0.4 (%68.4)->0.2 (%31.6))] --- > deleting segment 12 with 4 points - only 0.00% unknown > deleting segment 13 with 181 points - only 17.13% unknown > mean border=83.8, 850 (156) missing vertices, mean dist -0.2 [0.4 (%68.3)->0.2 (%31.7))] 6588c6638 < tol=1.0e-04, sigma=0.5, host=nid00, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=0.5, host=q0190, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6592,6595c6642,6645 < vertex spacing 0.89 +- 0.28 (0.06-->5.84) (max @ vno 101402 --> 120476) < face area 0.33 +- 0.18 (0.00-->3.71) < mean absolute distance = 0.26 +- 0.40 < 2707 vertices more than 2 sigmas from mean. --- > vertex spacing 0.89 +- 0.28 (0.06-->5.81) (max @ vno 101402 --> 120476) > face area 0.33 +- 0.18 (0.00-->3.74) > mean absolute distance = 0.26 +- 0.39 > 3174 vertices more than 2 sigmas from mean. 6597,6607c6647,6657 < 000: dt: 0.0000, sse=5025165.5, rms=4.03 < 026: dt: 0.5000, sse=5405209.5, rms=3.38 < rms = 3.62, time step reduction 1 of 3 to 0.250... < 027: dt: 0.2500, sse=5096125.0, rms=2.66 < 028: dt: 0.2500, sse=5158573.0, rms=2.41 < rms = 2.38, time step reduction 2 of 3 to 0.125... < 029: dt: 0.2500, sse=5114828.0, rms=2.38 < 030: dt: 0.1250, sse=4995354.0, rms=2.19 < rms = 2.17, time step reduction 3 of 3 to 0.062... < 031: dt: 0.1250, sse=4965059.0, rms=2.17 < positioning took 0.7 minutes --- > 000: dt: 0.0000, sse=5027702.0, rms=4.03 > 027: dt: 0.5000, sse=5410611.0, rms=3.38 > rms = 3.64, time step reduction 1 of 3 to 0.250... > 028: dt: 0.2500, sse=5103088.5, rms=2.67 > 029: dt: 0.2500, sse=5174027.0, rms=2.43 > rms = 2.40, time step reduction 2 of 3 to 0.125... > 030: dt: 0.2500, sse=5119143.5, rms=2.40 > 031: dt: 0.1250, sse=5011356.0, rms=2.22 > rms = 2.20, time step reduction 3 of 3 to 0.062... > 032: dt: 0.1250, sse=4983599.5, rms=2.20 > positioning took 0.8 minutes 6609c6659 < deleting segment 0 with 898 points - only 25.72% unknown --- > deleting segment 0 with 900 points - only 25.00% unknown 6612,6620c6662,6665 < deleting segment 2 with 394 points - only 0.00% unknown < deleting segment 3 with 11 points - only 0.00% unknown < removing 2 vertex label from ripped group < deleting segment 5 with 2 points - only 0.00% unknown < deleting segment 6 with 15 points - only 0.00% unknown < removing 4 vertex label from ripped group < deleting segment 8 with 51 points - only 0.00% unknown < removing 3 vertex label from ripped group < deleting segment 10 with 10 points - only 0.00% unknown --- > deleting segment 3 with 5 points - only 0.00% unknown > deleting segment 4 with 391 points - only 0.00% unknown > deleting segment 5 with 11 points - only 0.00% unknown > deleting segment 6 with 11 points - only 36.36% unknown 6622,6625c6667,6670 < deleting segment 11 with 2 points - only 0.00% unknown < deleting segment 12 with 13 points - only 0.00% unknown < removing 3 vertex label from ripped group < deleting segment 13 with 3 points - only 0.00% unknown --- > deleting segment 8 with 2 points - only 0.00% unknown > deleting segment 9 with 18 points - only 0.00% unknown > removing 1 vertex label from ripped group > deleting segment 11 with 55 points - only 0.00% unknown 6627c6672 < deleting segment 14 with 4 points - only 0.00% unknown --- > deleting segment 12 with 4 points - only 0.00% unknown 6629,6631c6674,6676 < deleting segment 15 with 4 points - only 0.00% unknown < deleting segment 16 with 165 points - only 18.79% unknown < mean border=84.7, 888 (142) missing vertices, mean dist -0.1 [0.3 (%56.4)->0.2 (%43.6))] --- > deleting segment 13 with 4 points - only 0.00% unknown > deleting segment 14 with 165 points - only 18.79% unknown > mean border=84.7, 873 (133) missing vertices, mean dist -0.1 [0.3 (%56.5)->0.2 (%43.5))] 6633c6678 < tol=1.0e-04, sigma=0.2, host=nid00, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > tol=1.0e-04, sigma=0.2, host=q0190, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6639c6684 < 000: dt: 0.0000, sse=4996472.5, rms=2.52 --- > 000: dt: 0.0000, sse=5004363.0, rms=2.50 6641,6645c6686,6690 < 032: dt: 0.2500, sse=5177301.5, rms=2.08 < 033: dt: 0.2500, sse=5536698.0, rms=1.89 < rms = 1.95, time step reduction 2 of 3 to 0.125... < rms = 1.85, time step reduction 3 of 3 to 0.062... < 034: dt: 0.1250, sse=5523090.0, rms=1.85 --- > 033: dt: 0.2500, sse=5170525.0, rms=2.06 > 034: dt: 0.2500, sse=5541763.0, rms=1.87 > rms = 1.93, time step reduction 2 of 3 to 0.125... > rms = 1.83, time step reduction 3 of 3 to 0.062... > 035: dt: 0.1250, sse=5531977.0, rms=1.83 6648c6693 < deleting segment 1 with 508 points - only 48.82% unknown --- > deleting segment 1 with 486 points - only 47.33% unknown 6650,6652c6695,6697 < mean border=56.1, 772 (772) missing vertices, mean dist 2.0 [3.3 (%0.3)->2.2 (%99.7))] < %51 local maxima, %36 large gradients and % 9 min vals, 507 gradients ignored < tol=1.0e-04, sigma=2.0, host=nid00, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > mean border=56.1, 802 (802) missing vertices, mean dist 2.0 [3.3 (%0.3)->2.2 (%99.7))] > %51 local maxima, %35 large gradients and % 9 min vals, 505 gradients ignored > tol=1.0e-04, sigma=2.0, host=q0190, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6657,6693c6702,6738 < 000: dt: 0.0000, sse=21287828.0, rms=28.60 < 001: dt: 0.5000, sse=16213150.0, rms=24.31 < 002: dt: 0.5000, sse=12629802.0, rms=20.72 < 003: dt: 0.5000, sse=10621909.0, rms=18.10 < 004: dt: 0.5000, sse=9570129.0, rms=16.11 < 005: dt: 0.5000, sse=8861155.0, rms=14.47 < 006: dt: 0.5000, sse=8322559.5, rms=13.05 < 007: dt: 0.5000, sse=7889740.0, rms=11.81 < 008: dt: 0.5000, sse=7557243.0, rms=10.66 < 009: dt: 0.5000, sse=7393211.0, rms=9.71 < 010: dt: 0.5000, sse=7308752.5, rms=8.93 < 011: dt: 0.5000, sse=7297189.0, rms=8.36 < 012: dt: 0.5000, sse=7280255.5, rms=7.90 < 013: dt: 0.5000, sse=7310066.5, rms=7.56 < 014: dt: 0.5000, sse=7265686.5, rms=7.26 < 015: dt: 0.5000, sse=7269222.0, rms=7.04 < 016: dt: 0.5000, sse=7236360.0, rms=6.81 < 017: dt: 0.5000, sse=7220283.0, rms=6.65 < 018: dt: 0.5000, sse=7211727.5, rms=6.48 < 019: dt: 0.5000, sse=7174120.0, rms=6.36 < 020: dt: 0.5000, sse=7170504.0, rms=6.22 < 021: dt: 0.5000, sse=7153539.0, rms=6.14 < 022: dt: 0.5000, sse=7147730.0, rms=6.03 < 023: dt: 0.5000, sse=7094290.0, rms=5.98 < 024: dt: 0.5000, sse=7122628.5, rms=5.89 < rms = 5.87, time step reduction 1 of 3 to 0.250... < 025: dt: 0.5000, sse=7083146.5, rms=5.87 < 026: dt: 0.2500, sse=5000013.0, rms=4.81 < 027: dt: 0.2500, sse=4807107.0, rms=4.59 < rms = 4.76, time step reduction 2 of 3 to 0.125... < 028: dt: 0.1250, sse=4600419.0, rms=4.36 < 029: dt: 0.1250, sse=4304363.0, rms=4.06 < 030: dt: 0.1250, sse=4225064.5, rms=3.98 < positioning took 3.3 minutes < mean border=51.6, 1105 (322) missing vertices, mean dist 0.3 [0.2 (%30.9)->0.6 (%69.1))] < %64 local maxima, %26 large gradients and % 5 min vals, 233 gradients ignored < tol=1.0e-04, sigma=1.0, host=nid00, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > 000: dt: 0.0000, sse=21281788.0, rms=28.60 > 001: dt: 0.5000, sse=16211866.0, rms=24.30 > 002: dt: 0.5000, sse=12625399.0, rms=20.70 > 003: dt: 0.5000, sse=10615448.0, rms=18.08 > 004: dt: 0.5000, sse=9573850.0, rms=16.09 > 005: dt: 0.5000, sse=8892222.0, rms=14.46 > 006: dt: 0.5000, sse=8367163.5, rms=13.04 > 007: dt: 0.5000, sse=7944114.5, rms=11.79 > 008: dt: 0.5000, sse=7596067.5, rms=10.64 > 009: dt: 0.5000, sse=7433472.0, rms=9.67 > 010: dt: 0.5000, sse=7333305.0, rms=8.89 > 011: dt: 0.5000, sse=7338117.0, rms=8.33 > 012: dt: 0.5000, sse=7298860.5, rms=7.87 > 013: dt: 0.5000, sse=7294440.0, rms=7.53 > 014: dt: 0.5000, sse=7306385.0, rms=7.23 > 015: dt: 0.5000, sse=7258008.5, rms=7.01 > 016: dt: 0.5000, sse=7250454.0, rms=6.79 > 017: dt: 0.5000, sse=7230180.0, rms=6.63 > 018: dt: 0.5000, sse=7250120.0, rms=6.47 > 019: dt: 0.5000, sse=7212074.0, rms=6.35 > 020: dt: 0.5000, sse=7215599.0, rms=6.22 > 021: dt: 0.5000, sse=7164191.5, rms=6.13 > 022: dt: 0.5000, sse=7161161.0, rms=6.04 > 023: dt: 0.5000, sse=7106142.5, rms=5.97 > 024: dt: 0.5000, sse=7133457.5, rms=5.90 > rms = 5.86, time step reduction 1 of 3 to 0.250... > 025: dt: 0.5000, sse=7095058.5, rms=5.86 > 026: dt: 0.2500, sse=5036903.5, rms=4.81 > 027: dt: 0.2500, sse=4832534.5, rms=4.60 > rms = 4.75, time step reduction 2 of 3 to 0.125... > 028: dt: 0.1250, sse=4626413.5, rms=4.36 > 029: dt: 0.1250, sse=4328848.0, rms=4.07 > 030: dt: 0.1250, sse=4252491.5, rms=3.98 > positioning took 3.7 minutes > mean border=51.6, 1206 (313) missing vertices, mean dist 0.3 [0.2 (%31.1)->0.6 (%68.9))] > %64 local maxima, %26 large gradients and % 5 min vals, 223 gradients ignored > tol=1.0e-04, sigma=1.0, host=q0190, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6698,6713c6743,6758 < 000: dt: 0.0000, sse=5419998.5, rms=7.60 < 031: dt: 0.5000, sse=5797418.5, rms=6.77 < 032: dt: 0.5000, sse=6707073.0, rms=6.18 < rms = 6.56, time step reduction 1 of 3 to 0.250... < 033: dt: 0.2500, sse=5500339.0, rms=5.11 < 034: dt: 0.2500, sse=5189791.5, rms=4.90 < rms = 5.15, time step reduction 2 of 3 to 0.125... < 035: dt: 0.1250, sse=4998354.5, rms=4.67 < 036: dt: 0.1250, sse=4759506.0, rms=4.40 < 037: dt: 0.1250, sse=4693230.0, rms=4.28 < rms = 4.24, time step reduction 3 of 3 to 0.062... < 038: dt: 0.1250, sse=4660613.0, rms=4.24 < positioning took 1.0 minutes < mean border=49.2, 1371 (277) missing vertices, mean dist 0.2 [0.2 (%32.0)->0.4 (%68.0))] < %70 local maxima, %19 large gradients and % 5 min vals, 235 gradients ignored < tol=1.0e-04, sigma=0.5, host=nid00, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > 000: dt: 0.0000, sse=5442816.5, rms=7.59 > 031: dt: 0.5000, sse=5825305.5, rms=6.75 > 032: dt: 0.5000, sse=6733054.0, rms=6.17 > rms = 6.53, time step reduction 1 of 3 to 0.250... > 033: dt: 0.2500, sse=5529069.5, rms=5.10 > 034: dt: 0.2500, sse=5224816.0, rms=4.87 > rms = 5.12, time step reduction 2 of 3 to 0.125... > 035: dt: 0.1250, sse=5030704.0, rms=4.65 > 036: dt: 0.1250, sse=4791046.5, rms=4.37 > 037: dt: 0.1250, sse=4717625.0, rms=4.25 > rms = 4.20, time step reduction 3 of 3 to 0.062... > 038: dt: 0.1250, sse=4682953.5, rms=4.20 > positioning took 1.1 minutes > mean border=49.2, 1368 (284) missing vertices, mean dist 0.2 [0.2 (%31.9)->0.4 (%68.1))] > %70 local maxima, %19 large gradients and % 6 min vals, 232 gradients ignored > tol=1.0e-04, sigma=0.5, host=q0190, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6718,6732c6763,6777 < 000: dt: 0.0000, sse=4919619.0, rms=5.31 < rms = 6.24, time step reduction 1 of 3 to 0.250... < 039: dt: 0.2500, sse=4717596.5, rms=4.66 < 040: dt: 0.2500, sse=4702403.5, rms=4.43 < rms = 4.60, time step reduction 2 of 3 to 0.125... < 041: dt: 0.1250, sse=4613648.0, rms=4.28 < 042: dt: 0.1250, sse=4566639.5, rms=4.08 < 043: dt: 0.1250, sse=4558685.0, rms=3.99 < 044: dt: 0.1250, sse=4570763.0, rms=3.93 < rms = 3.89, time step reduction 3 of 3 to 0.062... < 045: dt: 0.1250, sse=4581240.5, rms=3.89 < positioning took 0.9 minutes < mean border=48.4, 1916 (263) missing vertices, mean dist 0.1 [0.2 (%41.0)->0.3 (%59.0))] < %72 local maxima, %17 large gradients and % 5 min vals, 216 gradients ignored < tol=1.0e-04, sigma=0.2, host=nid00, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 --- > 000: dt: 0.0000, sse=4937728.0, rms=5.27 > rms = 6.21, time step reduction 1 of 3 to 0.250... > 039: dt: 0.2500, sse=4736429.5, rms=4.61 > 040: dt: 0.2500, sse=4711686.0, rms=4.38 > rms = 4.55, time step reduction 2 of 3 to 0.125... > 041: dt: 0.1250, sse=4625959.0, rms=4.23 > 042: dt: 0.1250, sse=4573109.0, rms=4.03 > 043: dt: 0.1250, sse=4566871.5, rms=3.94 > 044: dt: 0.1250, sse=4573229.5, rms=3.88 > rms = 3.83, time step reduction 3 of 3 to 0.062... > 045: dt: 0.1250, sse=4596342.5, rms=3.83 > positioning took 1.0 minutes > mean border=48.4, 1987 (272) missing vertices, mean dist 0.1 [0.2 (%41.0)->0.3 (%59.0))] > %72 local maxima, %17 large gradients and % 6 min vals, 241 gradients ignored > tol=1.0e-04, sigma=0.2, host=q0190, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 6735c6780 < writing pial surface to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.pial... --- > writing pial surface to /N/dc/projects/shenlab/subjects/10080_3/surf/rh.pial... 6737,6744c6782,6792 < 000: dt: 0.0000, sse=4601564.5, rms=4.02 < rms = 5.36, time step reduction 1 of 3 to 0.250... < 046: dt: 0.2500, sse=4548098.0, rms=3.75 < rms = 3.76, time step reduction 2 of 3 to 0.125... < rms = 3.71, time step reduction 3 of 3 to 0.062... < 047: dt: 0.1250, sse=4533746.0, rms=3.71 < positioning took 0.4 minutes < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.curv.pial --- > 000: dt: 0.0000, sse=4620906.5, rms=3.98 > rms = 5.33, time step reduction 1 of 3 to 0.250... > 046: dt: 0.2500, sse=4570324.0, rms=3.72 > rms = 3.72, time step reduction 2 of 3 to 0.125... > 047: dt: 0.2500, sse=4803735.0, rms=3.72 > 048: dt: 0.1250, sse=4686547.5, rms=3.57 > 049: dt: 0.1250, sse=4692080.5, rms=3.48 > rms = 3.44, time step reduction 3 of 3 to 0.062... > 050: dt: 0.1250, sse=4716907.0, rms=3.44 > positioning took 0.7 minutes > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/rh.curv.pial 6746,6748c6794,6796 < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.area.pial < vertex spacing 1.00 +- 0.46 (0.04-->8.33) (max @ vno 82821 --> 81977) < face area 0.41 +- 0.34 (0.00-->9.19) --- > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/rh.area.pial > vertex spacing 1.00 +- 0.46 (0.07-->8.03) (max @ vno 81995 --> 81994) > face area 0.41 +- 0.34 (0.00-->7.12) 6761,6784c6809,6832 < thickness calculation complete, 1483:1785 truncations. < 62753 vertices at 0 distance < 66717 vertices at 1 distance < 56160 vertices at 2 distance < 26464 vertices at 3 distance < 10527 vertices at 4 distance < 4220 vertices at 5 distance < 1884 vertices at 6 distance < 924 vertices at 7 distance < 573 vertices at 8 distance < 330 vertices at 9 distance < 220 vertices at 10 distance < 154 vertices at 11 distance < 117 vertices at 12 distance < 91 vertices at 13 distance < 81 vertices at 14 distance < 53 vertices at 15 distance < 30 vertices at 16 distance < 37 vertices at 17 distance < 31 vertices at 18 distance < 24 vertices at 19 distance < 36 vertices at 20 distance < writing curvature file /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.thickness < positioning took 12.5 minutes --- > thickness calculation complete, 1584:1845 truncations. > 61952 vertices at 0 distance > 66568 vertices at 1 distance > 56488 vertices at 2 distance > 26979 vertices at 3 distance > 10548 vertices at 4 distance > 4274 vertices at 5 distance > 1882 vertices at 6 distance > 935 vertices at 7 distance > 552 vertices at 8 distance > 341 vertices at 9 distance > 226 vertices at 10 distance > 134 vertices at 11 distance > 116 vertices at 12 distance > 87 vertices at 13 distance > 84 vertices at 14 distance > 56 vertices at 15 distance > 35 vertices at 16 distance > 33 vertices at 17 distance > 27 vertices at 18 distance > 38 vertices at 19 distance > 31 vertices at 20 distance > writing curvature file /N/dc/projects/shenlab/subjects/10080_3/surf/rh.thickness > positioning took 14.7 minutes 6786,6787c6834,6835 < #@# Surf Volume rh Tue Aug 20 18:12:48 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf --- > #@# Surf Volume rh Wed Aug 21 09:12:29 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/surf 6801,6802c6849,6850 < #@# Parcellation Stats rh Tue Aug 20 18:12:49 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Parcellation Stats rh Wed Aug 21 09:12:30 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6807,6810c6855,6858 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... < reading input pial surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.pial... < reading input white surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... > reading input pial surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.pial... > reading input white surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... 6828,6861c6876,6909 < 1072 733 1729 2.406 0.480 0.136 0.076 28 3.0 bankssts < 1648 1158 2366 2.250 1.243 0.173 0.115 89 9.9 caudalanteriorcingulate < 2248 1483 4124 2.524 0.625 0.181 0.463 298 15.7 caudalmiddlefrontal < 2373 1438 2981 1.853 0.407 0.175 0.103 76 11.1 cuneus < 435 293 1900 3.832 0.749 0.195 0.201 17 4.5 entorhinal < 3311 2229 6357 2.460 0.644 0.194 0.139 156 18.2 fusiform < 6009 4124 11643 2.431 0.597 0.189 0.131 230 32.4 inferiorparietal < 2912 2030 7891 2.965 0.893 0.243 0.435 1799 27.1 inferiortemporal < 1214 721 1723 2.429 0.849 0.187 0.175 91 5.8 isthmuscingulate < 6783 4484 10981 2.202 0.507 0.194 2.760 1679 30.6 lateraloccipital < 3170 2125 6006 2.476 0.709 0.172 0.111 93 14.0 lateralorbitofrontal < 3608 2309 5156 1.991 0.576 0.178 0.132 138 20.0 lingual < 2760 1841 4743 2.145 0.807 0.181 0.118 129 13.1 medialorbitofrontal < 3553 2505 8964 2.876 0.705 0.202 0.164 177 19.3 middletemporal < 963 654 1934 2.520 0.877 0.148 0.073 62 2.5 parahippocampal < 2825 1837 4783 2.314 0.710 0.148 0.077 53 8.7 paracentral < 1717 1157 3285 2.515 0.498 0.180 0.115 57 8.0 parsopercularis < 923 630 2173 2.606 0.868 0.210 0.123 35 5.0 parsorbitalis < 1835 1259 3696 2.514 0.566 0.185 0.111 59 9.0 parstriangularis < 1794 1132 1933 1.742 0.393 0.164 0.457 148 7.8 pericalcarine < 5215 3259 7382 2.015 0.582 0.146 0.098 174 18.6 postcentral < 3664 2410 2354 0.993 0.599 0.139 0.842 1364 12.2 posteriorcingulate < 6406 4006 10748 2.477 0.531 0.150 0.133 1175 27.6 precentral < 5459 3598 9770 2.427 0.651 0.188 0.133 198 26.7 precuneus < 644 397 1083 3.226 1.667 0.168 0.153 39 3.3 rostralanteriorcingulate < 6334 4233 11807 2.337 0.635 0.192 0.233 702 32.4 rostralmiddlefrontal < 13413 8976 25172 2.308 0.942 0.189 0.199 946 80.6 superiorfrontal < 7963 5264 13354 2.210 0.636 0.160 0.128 431 51.3 superiorparietal < 4303 2845 8938 2.624 0.648 0.158 0.094 168 19.1 superiortemporal < 4546 3023 8290 2.508 0.546 0.200 0.233 304 46.0 supramarginal < 410 256 1154 2.853 0.864 0.292 0.272 50 3.5 frontalpole < 522 382 2614 4.030 0.753 0.226 1.673 127 6.3 temporalpole < 312 193 524 2.488 0.248 0.158 0.089 6 0.9 transversetemporal < 2820 1832 5525 2.912 0.928 0.187 0.563 351 62.2 insula --- > 1070 733 1746 2.428 0.474 0.137 0.076 28 3.0 bankssts > 1396 967 2129 2.425 1.307 0.179 0.126 87 9.3 caudalanteriorcingulate > 2304 1518 4172 2.540 0.597 0.179 0.454 299 15.9 caudalmiddlefrontal > 2356 1427 2984 1.875 0.404 0.175 0.102 76 11.0 cuneus > 440 297 1934 3.760 0.750 0.189 0.196 16 4.5 entorhinal > 3311 2233 6565 2.486 0.635 0.195 0.139 157 18.1 fusiform > 5983 4119 11621 2.438 0.579 0.191 0.135 268 30.7 inferiorparietal > 2900 2020 8066 3.022 0.878 0.243 0.436 1799 27.2 inferiortemporal > 903 528 819 1.528 0.841 0.165 0.166 50 4.3 isthmuscingulate > 6871 4538 11198 2.219 0.497 0.193 2.725 1681 31.0 lateraloccipital > 3073 2058 6044 2.549 0.690 0.174 0.113 93 13.9 lateralorbitofrontal > 3571 2286 5152 2.008 0.576 0.178 0.133 137 19.9 lingual > 2802 1870 5054 2.213 0.792 0.182 0.118 129 13.3 medialorbitofrontal > 3557 2505 8980 2.887 0.679 0.202 0.165 177 19.3 middletemporal > 970 656 2006 2.574 0.837 0.150 0.076 62 2.7 parahippocampal > 4007 2620 5662 1.967 0.906 0.145 0.074 73 12.1 paracentral > 1764 1190 3383 2.492 0.516 0.181 0.115 58 8.3 parsopercularis > 878 601 2100 2.659 0.830 0.212 0.125 33 4.9 parsorbitalis > 1898 1292 3797 2.533 0.559 0.185 0.112 62 9.5 parstriangularis > 1785 1126 1953 1.758 0.392 0.165 0.457 143 8.0 pericalcarine > 5183 3229 7357 2.019 0.587 0.144 0.097 169 18.3 postcentral > 1673 1184 1250 1.026 0.426 0.145 0.119 63 11.7 posteriorcingulate > 6517 4086 10992 2.484 0.527 0.150 0.132 1177 27.8 precentral > 6954 4471 11370 2.326 0.839 0.182 0.528 1530 31.3 precuneus > 641 388 1066 3.274 1.668 0.166 0.155 39 3.3 rostralanteriorcingulate > 6270 4199 11821 2.374 0.610 0.191 0.243 743 29.2 rostralmiddlefrontal > 13118 8812 25108 2.337 0.936 0.190 0.202 935 79.5 superiorfrontal > 8084 5339 13681 2.232 0.641 0.161 0.130 438 52.3 superiorparietal > 4330 2860 8953 2.617 0.636 0.159 0.096 228 20.1 superiortemporal > 4586 3056 8374 2.509 0.552 0.201 0.232 309 46.3 supramarginal > 369 231 1093 2.921 0.887 0.299 0.282 47 3.1 frontalpole > 519 381 2713 4.076 0.723 0.228 1.683 127 6.3 temporalpole > 312 193 525 2.497 0.248 0.158 0.089 6 0.9 transversetemporal > 2799 1822 5543 2.926 0.922 0.187 0.567 350 62.0 insula 6863,6864c6911,6912 < #@# Cortical Parc 2 rh Tue Aug 20 18:13:09 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Cortical Parc 2 rh Wed Aug 21 09:12:46 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6866c6914 < mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 10080_3 rh ../surf/rh.sphere.reg /N/soft/cle4/freesurfer/5.1.0/average/rh.destrieux.simple.2009-07-29.gcs ../label/rh.aparc.a2009s.annot --- > mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 10080_3 rh ../surf/rh.sphere.reg /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/rh.destrieux.simple.2009-07-29.gcs ../label/rh.aparc.a2009s.annot 6872c6920 < reading atlas from /N/soft/cle4/freesurfer/5.1.0/average/rh.destrieux.simple.2009-07-29.gcs... --- > reading atlas from /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/rh.destrieux.simple.2009-07-29.gcs... 6879c6927 < 238 labels changed using aseg --- > 237 labels changed using aseg 6881,6905c6929,6950 < 000: 8812 changed, 120643 examined... < 001: 2150 changed, 33670 examined... < 002: 644 changed, 11074 examined... < 003: 291 changed, 3562 examined... < 004: 157 changed, 1675 examined... < 005: 89 changed, 836 examined... < 006: 46 changed, 479 examined... < 007: 18 changed, 254 examined... < 008: 19 changed, 114 examined... < 009: 6 changed, 89 examined... < 010: 3 changed, 42 examined... < 011: 2 changed, 17 examined... < 012: 2 changed, 8 examined... < 013: 1 changed, 14 examined... < 014: 1 changed, 5 examined... < 015: 2 changed, 5 examined... < 016: 1 changed, 11 examined... < 017: 2 changed, 7 examined... < 018: 0 changed, 12 examined... < 89 labels changed using aseg < 000: 327 total segments, 240 labels (3067 vertices) changed < 001: 106 total segments, 21 labels (133 vertices) changed < 002: 86 total segments, 1 labels (1 vertices) changed < 003: 85 total segments, 0 labels (0 vertices) changed < 10 filter iterations complete (10 requested, 131 changed) --- > 000: 9091 changed, 120643 examined... > 001: 2153 changed, 34657 examined... > 002: 622 changed, 10998 examined... > 003: 286 changed, 3434 examined... > 004: 133 changed, 1624 examined... > 005: 67 changed, 760 examined... > 006: 36 changed, 392 examined... > 007: 14 changed, 200 examined... > 008: 6 changed, 90 examined... > 009: 4 changed, 36 examined... > 010: 3 changed, 22 examined... > 011: 1 changed, 17 examined... > 012: 2 changed, 7 examined... > 013: 2 changed, 10 examined... > 014: 3 changed, 12 examined... > 015: 1 changed, 11 examined... > 016: 0 changed, 6 examined... > 91 labels changed using aseg > 000: 368 total segments, 280 labels (3916 vertices) changed > 001: 100 total segments, 15 labels (231 vertices) changed > 002: 85 total segments, 0 labels (0 vertices) changed > 10 filter iterations complete (10 requested, 95 changed) 6908,6909c6953,6954 < 1487 vertices marked for relabeling... < 1487 labels changed in reclassification. --- > 1366 vertices marked for relabeling... > 1366 labels changed in reclassification. 6911c6956 < classification took 1 minutes and 24 seconds. --- > classification took 1 minutes and 5 seconds. 6913,6914c6958,6959 < #@# Parcellation Stats 2 rh Tue Aug 20 18:14:33 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/scripts --- > #@# Parcellation Stats 2 rh Wed Aug 21 09:13:52 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/scripts 6919,6922c6964,6967 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... < reading input pial surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.pial... < reading input white surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... > reading input pial surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.pial... > reading input white surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... 6940,7013c6985,7058 < 686 457 1597 2.625 0.836 0.229 0.176 48 4.1 G_and_S_frontomargin < 1652 1103 2878 2.320 0.595 0.189 10.972 1509 7.6 G_and_S_occipital_inf < 1294 789 2226 2.296 0.489 0.156 0.080 161 4.3 G_and_S_paracentral < 1181 810 2483 2.589 0.581 0.175 0.247 73 18.9 G_and_S_subcentral < 933 579 2011 2.505 0.609 0.246 0.226 82 7.8 G_and_S_transv_frontopol < 3173 2125 3657 1.837 1.193 0.154 0.081 112 10.0 G_and_S_cingul-Ant < 2305 1643 2808 1.824 1.027 0.155 0.092 66 8.2 G_and_S_cingul-Mid-Ant < 2856 1940 2829 1.445 0.818 0.129 0.072 64 8.6 G_and_S_cingul-Mid-Post < 1061 611 1012 1.644 1.134 0.159 0.111 70 4.4 G_cingul-Post-dorsal < 215 142 419 2.614 0.740 0.150 0.084 4 0.7 G_cingul-Post-ventral < 2379 1410 2982 1.826 0.421 0.181 0.104 166 9.4 G_cuneus < 1020 729 2525 2.643 0.467 0.214 0.148 39 5.8 G_front_inf-Opercular < 342 222 800 2.687 0.401 0.178 0.076 8 1.1 G_front_inf-Orbital < 856 607 2125 2.714 0.569 0.217 0.171 45 6.6 G_front_inf-Triangul < 3251 2157 7444 2.679 0.612 0.222 0.346 630 21.5 G_front_middle < 8700 5677 19555 2.646 0.775 0.205 0.258 813 64.3 G_front_sup < 445 294 929 3.066 0.780 0.185 0.222 30 3.8 G_Ins_lg_and_S_cent_ins < 624 382 1843 3.748 0.860 0.232 0.931 124 5.2 G_insular_short < 2003 1386 4654 2.652 0.558 0.237 0.170 109 11.2 G_occipital_middle < 1718 1097 2772 2.182 0.494 0.165 0.260 180 29.9 G_occipital_sup < 1753 1140 3585 2.543 0.562 0.212 0.165 114 11.4 G_oc-temp_lat-fusifor < 2600 1589 3797 2.035 0.577 0.189 0.163 121 18.4 G_oc-temp_med-Lingual < 1125 742 3124 3.098 0.916 0.169 0.090 72 4.1 G_oc-temp_med-Parahip < 2289 1526 5601 2.737 0.775 0.209 0.148 97 13.1 G_orbital < 2409 1651 5557 2.652 0.549 0.215 0.197 144 16.3 G_pariet_inf-Angular < 2074 1383 4465 2.732 0.542 0.234 0.207 110 16.6 G_pariet_inf-Supramar < 2596 1689 5100 2.401 0.567 0.171 0.111 84 10.2 G_parietal_sup < 2077 1161 3142 2.146 0.450 0.155 0.149 99 10.4 G_postcentral < 2660 1556 5471 2.724 0.435 0.158 0.191 950 12.2 G_precentral < 2498 1696 5766 2.682 0.618 0.232 0.180 142 15.5 G_precuneus < 785 551 1635 2.337 0.707 0.227 0.176 45 5.6 G_rectus < 111 68 124 1.871 0.744 0.055 0.044 0 0.2 G_subcallosal < 273 174 519 2.556 0.260 0.149 0.080 4 0.7 G_temp_sup-G_T_transv < 1513 953 3946 2.918 0.605 0.180 0.123 92 9.9 G_temp_sup-Lateral < 446 318 1176 3.198 0.899 0.169 0.100 10 1.9 G_temp_sup-Plan_polar < 602 416 1119 2.393 0.555 0.174 0.119 42 3.1 G_temp_sup-Plan_tempo < 1629 1157 5380 3.232 0.874 0.285 0.636 1720 17.0 G_temporal_inf < 2146 1521 6375 3.045 0.723 0.221 0.209 116 13.3 G_temporal_middle < 346 241 579 2.513 0.456 0.146 0.045 4 0.7 Lat_Fis-ant-Horizont < 218 129 292 2.493 0.689 0.186 0.150 8 1.6 Lat_Fis-ant-Vertical < 1299 792 1591 2.319 0.446 0.166 0.285 132 9.7 Lat_Fis-post < 2765 1828 4165 2.019 0.554 0.197 0.346 189 16.0 Pole_occipital < 1478 1062 5846 3.463 0.889 0.234 0.719 175 14.3 Pole_temporal < 1561 999 1650 1.799 0.458 0.152 0.117 48 5.0 S_calcarine < 2825 1849 3070 1.926 0.640 0.137 0.089 93 10.8 S_central < 2548 1667 3092 1.824 1.000 0.153 1.190 1315 8.7 S_cingul-Marginalis < 611 405 876 2.330 0.504 0.128 0.055 6 1.4 S_circular_insula_ant < 1074 728 1545 2.488 0.713 0.123 0.051 15 2.4 S_circular_insula_inf < 1176 766 1629 2.399 0.471 0.155 0.556 105 47.7 S_circular_insula_sup < 422 290 788 2.760 0.751 0.184 0.194 12 2.4 S_collat_transv_ant < 467 299 611 1.967 0.370 0.168 0.071 8 1.4 S_collat_transv_post < 1562 1047 2144 2.034 0.416 0.150 0.123 55 4.9 S_front_inf < 1577 1067 2241 2.080 0.422 0.157 0.125 75 5.9 S_front_middle < 1930 1345 3810 2.419 0.667 0.169 0.128 76 8.2 S_front_sup < 128 80 180 2.219 0.199 0.085 0.021 0 0.1 S_interm_prim-Jensen < 3255 2175 4767 2.131 0.669 0.145 0.067 53 9.7 S_intrapariet_and_P_trans < 811 561 1168 2.114 0.543 0.165 0.087 18 3.3 S_oc_middle_and_Lunatus < 1485 998 1979 2.093 0.415 0.167 0.094 42 5.3 S_oc_sup_and_transversal < 533 370 751 2.204 0.479 0.150 0.085 10 1.8 S_occipital_ant < 463 295 697 2.235 0.574 0.204 0.263 66 6.0 S_oc-temp_lat < 1371 1032 1963 2.010 0.466 0.136 0.045 13 2.6 S_oc-temp_med_and_Lingual < 336 232 505 1.854 0.586 0.172 0.078 9 1.0 S_orbital_lateral < 681 491 994 1.856 0.762 0.113 0.058 15 2.0 S_orbital_med-olfact < 1033 686 1781 2.390 0.682 0.166 0.088 20 4.1 S_orbital-H_Shaped < 1855 1235 2405 2.117 0.468 0.144 0.058 26 4.7 S_parieto_occipital < 1760 1110 2086 1.993 1.329 0.205 0.196 156 13.4 S_pericallosal < 1881 1288 2245 1.874 0.430 0.124 0.046 24 3.7 S_postcentral < 1185 765 1629 2.324 0.477 0.155 0.647 150 8.5 S_precentral-inf-part < 877 602 1200 2.285 0.351 0.118 0.043 6 1.7 S_precentral-sup-part < 546 362 827 2.183 0.943 0.168 0.084 11 1.9 S_suborbital < 1254 811 2024 2.361 0.759 0.200 0.123 43 6.7 S_subparietal < 684 456 942 2.297 0.531 0.181 0.132 23 4.5 S_temporal_inf < 4667 3150 7170 2.306 0.509 0.150 0.098 150 20.5 S_temporal_sup < 220 154 411 2.578 0.369 0.158 0.046 3 0.5 S_temporal_transverse --- > 677 457 1652 2.713 0.801 0.229 0.176 47 4.0 G_and_S_frontomargin > 1670 1110 2950 2.335 0.576 0.190 10.852 1510 7.7 G_and_S_occipital_inf > 1708 1068 2812 2.308 0.454 0.147 0.071 164 5.1 G_and_S_paracentral > 1086 733 2208 2.574 0.584 0.173 0.262 70 18.7 G_and_S_subcentral > 794 499 1811 2.566 0.641 0.242 0.207 65 5.9 G_and_S_transv_frontopol > 4112 2646 5628 2.102 1.186 0.163 0.105 149 16.0 G_and_S_cingul-Ant > 2156 1522 2890 2.006 1.032 0.162 0.105 76 7.8 G_and_S_cingul-Mid-Ant > 1614 1156 1102 0.971 0.342 0.121 0.054 27 4.7 G_and_S_cingul-Mid-Post > 340 201 224 1.150 0.624 0.171 0.392 36 5.9 G_cingul-Post-dorsal > 147 98 228 2.291 0.701 0.149 0.084 4 0.4 G_cingul-Post-ventral > 2265 1333 2858 1.844 0.418 0.185 0.128 176 12.3 G_cuneus > 1012 724 2520 2.640 0.466 0.215 0.150 39 5.8 G_front_inf-Opercular > 338 220 819 2.758 0.458 0.180 0.080 8 1.1 G_front_inf-Orbital > 844 599 2109 2.723 0.546 0.218 0.173 45 6.5 G_front_inf-Triangul > 3249 2167 7498 2.697 0.607 0.219 0.329 545 20.7 G_front_middle > 8044 5312 18335 2.649 0.751 0.207 0.267 799 60.7 G_front_sup > 439 297 934 3.107 0.806 0.196 0.221 32 4.2 G_Ins_lg_and_S_cent_ins > 653 400 1912 3.696 0.873 0.226 0.891 124 5.2 G_insular_short > 1886 1300 4444 2.672 0.516 0.243 0.186 138 10.9 G_occipital_middle > 1772 1121 2817 2.185 0.483 0.167 0.255 181 30.2 G_occipital_sup > 1795 1161 3728 2.560 0.544 0.211 0.177 115 12.0 G_oc-temp_lat-fusifor > 2574 1581 3860 2.058 0.578 0.189 0.164 121 18.3 G_oc-temp_med-Lingual > 1088 714 3144 3.129 0.896 0.168 0.087 70 3.6 G_oc-temp_med-Parahip > 2119 1428 5361 2.778 0.740 0.207 0.143 81 11.8 G_orbital > 2410 1652 5520 2.634 0.589 0.216 0.205 147 16.1 G_pariet_inf-Angular > 2419 1625 5173 2.717 0.531 0.224 0.189 118 17.7 G_pariet_inf-Supramar > 2746 1798 5506 2.445 0.605 0.180 0.119 100 11.7 G_parietal_sup > 2057 1145 3124 2.150 0.461 0.155 0.151 99 10.4 G_postcentral > 2627 1544 5405 2.724 0.441 0.158 0.192 948 11.9 G_precentral > 3282 2181 7135 2.645 0.633 0.224 0.171 198 20.1 G_precuneus > 876 604 1945 2.481 0.676 0.227 0.186 49 6.3 G_rectus > 115 70 125 1.823 0.712 0.055 0.035 0 0.2 G_subcallosal > 290 188 559 2.564 0.255 0.153 0.085 5 0.9 G_temp_sup-G_T_transv > 1594 1005 4061 2.857 0.661 0.194 0.150 187 12.5 G_temp_sup-Lateral > 407 281 1070 3.281 0.890 0.168 0.123 9 1.8 G_temp_sup-Plan_polar > 512 356 964 2.411 0.479 0.141 0.063 7 1.3 G_temp_sup-Plan_tempo > 1631 1158 5576 3.305 0.862 0.286 0.636 1720 17.0 G_temporal_inf > 2184 1545 6492 3.059 0.700 0.221 0.208 117 13.6 G_temporal_middle > 375 261 659 2.528 0.430 0.148 0.048 4 0.8 Lat_Fis-ant-Horizont > 238 140 317 2.510 0.672 0.184 0.143 8 1.7 Lat_Fis-ant-Vertical > 1219 747 1481 2.325 0.432 0.164 0.241 91 8.6 Lat_Fis-post > 2935 1953 4470 2.025 0.537 0.196 0.317 181 13.5 Pole_occipital > 1428 1031 5835 3.490 0.849 0.235 0.739 173 14.0 Pole_temporal > 1589 1022 1698 1.818 0.461 0.152 0.114 43 5.3 S_calcarine > 2850 1858 3104 1.938 0.648 0.137 0.089 95 11.0 S_central > 2917 1918 3200 1.647 1.000 0.146 1.042 1317 9.2 S_cingul-Marginalis > 594 394 854 2.361 0.478 0.127 0.054 6 1.3 S_circular_insula_ant > 1082 738 1581 2.461 0.697 0.123 0.050 15 2.4 S_circular_insula_inf > 1243 803 1743 2.444 0.480 0.157 0.587 146 48.9 S_circular_insula_sup > 396 275 725 2.732 0.741 0.164 0.128 9 1.7 S_collat_transv_ant > 412 267 501 1.955 0.353 0.147 0.051 5 0.9 S_collat_transv_post > 1561 1047 2176 2.071 0.391 0.151 0.126 55 5.2 S_front_inf > 1602 1081 2313 2.138 0.388 0.156 0.171 124 4.3 S_front_middle > 1983 1376 4043 2.461 0.693 0.168 0.131 78 8.6 S_front_sup > 143 94 200 2.176 0.221 0.084 0.021 0 0.1 S_interm_prim-Jensen > 3028 2015 4520 2.155 0.668 0.144 0.068 51 9.0 S_intrapariet_and_P_trans > 827 576 1236 2.150 0.529 0.170 0.079 18 2.9 S_oc_middle_and_Lunatus > 1484 1000 1989 2.109 0.409 0.164 0.093 41 5.1 S_oc_sup_and_transversal > 535 372 780 2.295 0.498 0.153 0.087 11 1.8 S_occipital_ant > 463 294 722 2.294 0.651 0.206 0.267 66 6.0 S_oc-temp_lat > 1307 987 1948 2.099 0.443 0.136 0.044 12 2.5 S_oc-temp_med_and_Lingual > 409 277 644 2.009 0.628 0.178 0.079 11 1.3 S_orbital_lateral > 686 480 1002 2.021 0.765 0.122 0.075 23 2.5 S_orbital_med-olfact > 1043 695 1857 2.453 0.682 0.166 0.089 20 4.2 S_orbital-H_Shaped > 1927 1277 2521 2.134 0.455 0.147 0.064 31 5.5 S_parieto_occipital > 1387 882 1738 2.086 1.461 0.214 0.172 117 12.5 S_pericallosal > 1964 1350 2365 1.889 0.422 0.125 0.046 25 3.9 S_postcentral > 1261 812 1783 2.328 0.482 0.163 0.656 235 9.3 S_precentral-inf-part > 933 635 1298 2.316 0.363 0.117 0.044 7 1.9 S_precentral-sup-part > 626 422 956 2.139 0.730 0.171 0.083 16 2.4 S_suborbital > 1580 955 1789 1.893 1.103 0.155 0.094 44 5.5 S_subparietal > 667 444 927 2.331 0.500 0.182 0.134 22 4.5 S_temporal_inf > 4752 3206 7337 2.321 0.484 0.151 0.095 157 19.7 S_temporal_sup > 216 153 400 2.554 0.374 0.158 0.045 3 0.5 S_temporal_transverse 7015,7016c7060,7061 < #@# Cortical ribbon mask Tue Aug 20 18:14:53 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > #@# Cortical ribbon mask Wed Aug 21 09:14:10 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3/mri 7020c7065 < SUBJECTS_DIR is /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 --- > SUBJECTS_DIR is /N/dc/projects/shenlab/subjects 7026,7027c7071,7072 < hemi masks overlap voxels = 1395 < writing volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/ribbon.mgz --- > hemi masks overlap voxels = 1381 > writing volume /N/dc/projects/shenlab/subjects/10080_3/mri/ribbon.mgz 7030,7031c7075,7076 < #@# ASeg Stats Tue Aug 20 18:25:51 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3 --- > #@# ASeg Stats Wed Aug 21 09:28:06 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3 7033c7078 < mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /N/soft/cle4/freesurfer/5.1.0/ASegStatsLUT.txt --subject 10080_3 --- > mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/ASegStatsLUT.txt --subject 10080_3 7038c7083 < cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /N/soft/cle4/freesurfer/5.1.0/ASegStatsLUT.txt --subject 10080_3 --- > cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/ASegStatsLUT.txt --subject 10080_3 7040c7085 < hostname nid00048 --- > hostname q0190 7046,7047c7091,7092 < lh white matter volume 174059 < rh white matter volume 165534 --- > lh white matter volume 174053 > rh white matter volume 165541 7049,7050c7094,7095 < lh surface-based volumes (mm3): wTot = 190517.444092, pTot = 385575.854291 c = 195058.410199 < rh surface-based volumes (mm3): wTot = 174447.779613, pTot = 368996.214504 c = 194548.434891 --- > lh surface-based volumes (mm3): wTot = 190512.831414, pTot = 385567.258401 c = 195054.426988 > rh surface-based volumes (mm3): wTot = 174453.937602, pTot = 371093.394847 c = 196639.457245 7052,7053c7097,7098 < SupraTentVolCor = 41296.000 < SupraTentVol = 795868.069 --- > SupraTentVolCor = 41327.000 > SupraTentVol = 797987.653 7109,7110c7154,7155 < #@# AParc-to-ASeg Tue Aug 20 18:34:22 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3 --- > #@# AParc-to-ASeg Wed Aug 21 09:40:03 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3 7114c7159 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects 7116c7161 < outvol /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aparc+aseg.mgz --- > outvol /N/dc/projects/shenlab/subjects/10080_3/mri/aparc+aseg.mgz 7122c7167 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 7125c7170 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.pial --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.pial 7127c7172 < Loading lh annotations from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/lh.aparc.annot --- > Loading lh annotations from /N/dc/projects/shenlab/subjects/10080_3/label/lh.aparc.annot 7132c7177 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 7135c7180 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.pial --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.pial 7137c7182 < Loading rh annotations from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/rh.aparc.annot --- > Loading rh annotations from /N/dc/projects/shenlab/subjects/10080_3/label/rh.aparc.annot 7142c7187 < Loading ribbon segmentation from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/ribbon.mgz --- > Loading ribbon segmentation from /N/dc/projects/shenlab/subjects/10080_3/mri/ribbon.mgz 7152c7197 < Loading aseg from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.mgz --- > Loading aseg from /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.mgz 7173c7218 < 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 382243 --- > 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 384243 7175,7176c7220,7221 < Writing output aseg to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aparc+aseg.mgz < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3 --- > Writing output aseg to /N/dc/projects/shenlab/subjects/10080_3/mri/aparc+aseg.mgz > /N/dc/projects/shenlab/subjects/10080_3 7180c7225 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects 7182c7227 < outvol /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aparc.a2009s+aseg.mgz --- > outvol /N/dc/projects/shenlab/subjects/10080_3/mri/aparc.a2009s+aseg.mgz 7188c7233 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 7191c7236 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.pial --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.pial 7193c7238 < Loading lh annotations from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/lh.aparc.a2009s.annot --- > Loading lh annotations from /N/dc/projects/shenlab/subjects/10080_3/label/lh.aparc.a2009s.annot 7198c7243 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 7201c7246 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.pial --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.pial 7203c7248 < Loading rh annotations from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/rh.aparc.a2009s.annot --- > Loading rh annotations from /N/dc/projects/shenlab/subjects/10080_3/label/rh.aparc.a2009s.annot 7208c7253 < Loading ribbon segmentation from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/ribbon.mgz --- > Loading ribbon segmentation from /N/dc/projects/shenlab/subjects/10080_3/mri/ribbon.mgz 7218c7263 < Loading aseg from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.mgz --- > Loading aseg from /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.mgz 7239c7284 < 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 382243 --- > 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 384243 7241c7286 < Writing output aseg to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aparc.a2009s+aseg.mgz --- > Writing output aseg to /N/dc/projects/shenlab/subjects/10080_3/mri/aparc.a2009s+aseg.mgz 7243,7244c7288,7289 < #@# WMParc Tue Aug 20 18:37:16 EDT 2013 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3 --- > #@# WMParc Wed Aug 21 09:43:11 EDT 2013 > /N/dc/projects/shenlab/subjects/10080_3 7248c7293 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects 7257c7302 < CtxSeg /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aparc+aseg.mgz --- > CtxSeg /N/dc/projects/shenlab/subjects/10080_3/mri/aparc+aseg.mgz 7260c7305 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 7263c7308 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.pial --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.pial 7265c7310 < Loading lh annotations from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/lh.aparc.annot --- > Loading lh annotations from /N/dc/projects/shenlab/subjects/10080_3/label/lh.aparc.annot 7270c7315 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 7273c7318 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.pial --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.pial 7275c7320 < Loading rh annotations from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/rh.aparc.annot --- > Loading rh annotations from /N/dc/projects/shenlab/subjects/10080_3/label/rh.aparc.annot 7280,7281c7325,7326 < Loading ribbon segmentation from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/ribbon.mgz < Loading filled from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/filled.mgz --- > Loading ribbon segmentation from /N/dc/projects/shenlab/subjects/10080_3/mri/ribbon.mgz > Loading filled from /N/dc/projects/shenlab/subjects/10080_3/mri/filled.mgz 7284c7329 < Ripped 7479 vertices from right hemi --- > Ripped 7449 vertices from right hemi 7294,7295c7339,7340 < Loading aseg from /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aseg.mgz < Loading Ctx Seg File /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/aparc+aseg.mgz --- > Loading aseg from /N/dc/projects/shenlab/subjects/10080_3/mri/aseg.mgz > Loading Ctx Seg File /N/dc/projects/shenlab/subjects/10080_3/mri/aparc+aseg.mgz 7316c7361 < 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 707476 --- > 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 709483 7319c7364,7378 < Found 0 clusters --- > Found 14 clusters > 0 k 1.000000 > 1 k 3.000000 > 2 k 1.000000 > 3 k 21.000000 > 4 k 1.000000 > 5 k 1.000000 > 6 k 2.000000 > 7 k 3.000000 > 8 k 3.000000 > 9 k 1.000000 > 10 k 1.000000 > 11 k 1.000000 > 12 k 1098.000000 > 13 k 1.000000 7323c7382 < 1 k 1109.000000 --- > 1 k 1114.000000 7325,7328c7384,7387 < 3 k 4.000000 < 4 k 1.000000 < 5 k 36.000000 < 6 k 1.000000 --- > 3 k 1.000000 > 4 k 4.000000 > 5 k 1.000000 > 6 k 34.000000 7331c7390 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3 --- > /N/dc/projects/shenlab/subjects/10080_3 7333c7392 < mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 10080_3 --surf-wm-vol --ctab /N/soft/cle4/freesurfer/5.1.0/WMParcStatsLUT.txt --etiv --- > mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 10080_3 --surf-wm-vol --ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/WMParcStatsLUT.txt --etiv 7338c7397 < cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 10080_3 --surf-wm-vol --ctab /N/soft/cle4/freesurfer/5.1.0/WMParcStatsLUT.txt --etiv --- > cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 10080_3 --surf-wm-vol --ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/WMParcStatsLUT.txt --etiv 7340c7399 < hostname nid00048 --- > hostname q0190 7346,7347c7405,7406 < lh white matter volume 174059 < rh white matter volume 165534 --- > lh white matter volume 174053 > rh white matter volume 165541 7353,7354c7412,7413 < # nbrainsegvoxels 172627 < # brainsegvolume 172627.0 --- > # nbrainsegvoxels 172626 > # brainsegvolume 172626.0 7360,7362c7419,7421 < 1 3001 wm-lh-bankssts 1979 1979 < 2 3002 wm-lh-caudalanteriorcingulate 7965 7965 < 3 3003 wm-lh-caudalmiddlefrontal 4325 4325 --- > 1 3001 wm-lh-bankssts 1893 1893 > 2 3002 wm-lh-caudalanteriorcingulate 7933 7933 > 3 3003 wm-lh-caudalmiddlefrontal 4427 4427 7364,7394c7423,7453 < 5 3005 wm-lh-cuneus 1841 1841 < 6 3006 wm-lh-entorhinal 66 66 < 7 3007 wm-lh-fusiform 4913 4913 < 8 3008 wm-lh-inferiorparietal 8132 8132 < 9 3009 wm-lh-inferiortemporal 4135 4135 < 10 3010 wm-lh-isthmuscingulate 4261 4261 < 11 3011 wm-lh-lateraloccipital 7286 7286 < 12 3012 wm-lh-lateralorbitofrontal 4077 4077 < 13 3013 wm-lh-lingual 4069 4069 < 14 3014 wm-lh-medialorbitofrontal 2589 2589 < 15 3015 wm-lh-middletemporal 3453 3453 < 16 3016 wm-lh-parahippocampal 0 < 17 3017 wm-lh-paracentral 2748 2748 < 18 3018 wm-lh-parsopercularis 2937 2937 < 19 3019 wm-lh-parsorbitalis 696 696 < 20 3020 wm-lh-parstriangularis 2671 2671 < 21 3021 wm-lh-pericalcarine 1969 1969 < 22 3022 wm-lh-postcentral 5685 5685 < 23 3023 wm-lh-posteriorcingulate 12185 12185 < 24 3024 wm-lh-precentral 10198 10198 < 25 3025 wm-lh-precuneus 6913 6913 < 26 3026 wm-lh-rostralanteriorcingulate 4435 4435 < 27 3027 wm-lh-rostralmiddlefrontal 8514 8514 < 28 3028 wm-lh-superiorfrontal 12041 12041 < 29 3029 wm-lh-superiorparietal 10856 10856 < 30 3030 wm-lh-superiortemporal 5138 5138 < 31 3031 wm-lh-supramarginal 5984 5984 < 32 3032 wm-lh-frontalpole 254 254 < 33 3033 wm-lh-temporalpole 653 653 < 34 3034 wm-lh-transversetemporal 560 560 < 35 3035 wm-lh-insula 6463 6463 --- > 5 3005 wm-lh-cuneus 1773 1773 > 6 3006 wm-lh-entorhinal 544 544 > 7 3007 wm-lh-fusiform 4482 4482 > 8 3008 wm-lh-inferiorparietal 8108 8108 > 9 3009 wm-lh-inferiortemporal 3558 3558 > 10 3010 wm-lh-isthmuscingulate 9453 9453 > 11 3011 wm-lh-lateraloccipital 7191 7191 > 12 3012 wm-lh-lateralorbitofrontal 4181 4181 > 13 3013 wm-lh-lingual 3390 3390 > 14 3014 wm-lh-medialorbitofrontal 2779 2779 > 15 3015 wm-lh-middletemporal 3577 3577 > 16 3016 wm-lh-parahippocampal 1182 1182 > 17 3017 wm-lh-paracentral 2702 2702 > 18 3018 wm-lh-parsopercularis 2895 2895 > 19 3019 wm-lh-parsorbitalis 677 677 > 20 3020 wm-lh-parstriangularis 2694 2694 > 21 3021 wm-lh-pericalcarine 1968 1968 > 22 3022 wm-lh-postcentral 5683 5683 > 23 3023 wm-lh-posteriorcingulate 6417 6417 > 24 3024 wm-lh-precentral 10180 10180 > 25 3025 wm-lh-precuneus 6963 6963 > 26 3026 wm-lh-rostralanteriorcingulate 3888 3888 > 27 3027 wm-lh-rostralmiddlefrontal 8551 8551 > 28 3028 wm-lh-superiorfrontal 13173 13173 > 29 3029 wm-lh-superiorparietal 10992 10992 > 30 3030 wm-lh-superiortemporal 5063 5063 > 31 3031 wm-lh-supramarginal 5899 5899 > 32 3032 wm-lh-frontalpole 240 240 > 33 3033 wm-lh-temporalpole 677 677 > 34 3034 wm-lh-transversetemporal 561 561 > 35 3035 wm-lh-insula 6303 6303 7478,7480c7537,7539 < 119 4001 wm-rh-bankssts 2071 2071 < 120 4002 wm-rh-caudalanteriorcingulate 5021 5021 < 121 4003 wm-rh-caudalmiddlefrontal 3458 3458 --- > 119 4001 wm-rh-bankssts 2072 2072 > 120 4002 wm-rh-caudalanteriorcingulate 4157 4157 > 121 4003 wm-rh-caudalmiddlefrontal 3643 3643 7482,7497c7541,7556 < 123 4005 wm-rh-cuneus 1992 1992 < 124 4006 wm-rh-entorhinal 496 496 < 125 4007 wm-rh-fusiform 4123 4123 < 126 4008 wm-rh-inferiorparietal 7232 7232 < 127 4009 wm-rh-inferiortemporal 3778 3778 < 128 4010 wm-rh-isthmuscingulate 1179 1179 < 129 4011 wm-rh-lateraloccipital 8463 8463 < 130 4012 wm-rh-lateralorbitofrontal 4396 4396 < 131 4013 wm-rh-lingual 3402 3402 < 132 4014 wm-rh-medialorbitofrontal 2871 2871 < 133 4015 wm-rh-middletemporal 4198 4198 < 134 4016 wm-rh-parahippocampal 1239 1239 < 135 4017 wm-rh-paracentral 3961 3961 < 136 4018 wm-rh-parsopercularis 2422 2422 < 137 4019 wm-rh-parsorbitalis 849 849 < 138 4020 wm-rh-parstriangularis 2253 2253 --- > 123 4005 wm-rh-cuneus 1984 1984 > 124 4006 wm-rh-entorhinal 504 504 > 125 4007 wm-rh-fusiform 4071 4071 > 126 4008 wm-rh-inferiorparietal 7297 7297 > 127 4009 wm-rh-inferiortemporal 3794 3794 > 128 4010 wm-rh-isthmuscingulate 1147 1147 > 129 4011 wm-rh-lateraloccipital 8465 8465 > 130 4012 wm-rh-lateralorbitofrontal 4226 4226 > 131 4013 wm-rh-lingual 3473 3473 > 132 4014 wm-rh-medialorbitofrontal 2844 2844 > 133 4015 wm-rh-middletemporal 4229 4229 > 134 4016 wm-rh-parahippocampal 1254 1254 > 135 4017 wm-rh-paracentral 6675 6675 > 136 4018 wm-rh-parsopercularis 2484 2484 > 137 4019 wm-rh-parsorbitalis 835 835 > 138 4020 wm-rh-parstriangularis 2288 2288 7499,7510c7558,7569 < 140 4022 wm-rh-postcentral 5378 5378 < 141 4023 wm-rh-posteriorcingulate 9762 9762 < 142 4024 wm-rh-precentral 10200 10200 < 143 4025 wm-rh-precuneus 6930 6930 < 144 4026 wm-rh-rostralanteriorcingulate 1528 1528 < 145 4027 wm-rh-rostralmiddlefrontal 8364 8364 < 146 4028 wm-rh-superiorfrontal 18074 18074 < 147 4029 wm-rh-superiorparietal 9556 9556 < 148 4030 wm-rh-superiortemporal 4820 4820 < 149 4031 wm-rh-supramarginal 5788 5788 < 150 4032 wm-rh-frontalpole 265 265 < 151 4033 wm-rh-temporalpole 527 527 --- > 140 4022 wm-rh-postcentral 5374 5374 > 141 4023 wm-rh-posteriorcingulate 5702 5702 > 142 4024 wm-rh-precentral 10314 10314 > 143 4025 wm-rh-precuneus 8966 8966 > 144 4026 wm-rh-rostralanteriorcingulate 1598 1598 > 145 4027 wm-rh-rostralmiddlefrontal 8315 8315 > 146 4028 wm-rh-superiorfrontal 18044 18044 > 147 4029 wm-rh-superiorparietal 9662 9662 > 148 4030 wm-rh-superiortemporal 4886 4886 > 149 4031 wm-rh-supramarginal 5820 5820 > 150 4032 wm-rh-frontalpole 236 236 > 151 4033 wm-rh-temporalpole 518 518 7512c7571 < 153 4035 wm-rh-insula 6247 6247 --- > 153 4035 wm-rh-insula 6210 6210 7595,7596c7654,7655 < 236 5001 Left-UnsegmentedWhiteMatter 13455 13455 < 237 5002 Right-UnsegmentedWhiteMatter 5115 5115 --- > 236 5001 Left-UnsegmentedWhiteMatter 13491 13491 > 237 5002 Right-UnsegmentedWhiteMatter 5097 5097 7750,7751c7809,7810 < Reporting on 69 segmentations < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label --- > Reporting on 70 segmentations > /N/dc/projects/shenlab/subjects/10080_3/label 7753c7812 < #@# BA Labels lh Tue Aug 20 18:53:33 EDT 2013 --- > #@# BA Labels lh Wed Aug 21 10:04:00 EDT 2013 7755c7814 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA1.label --trgsubject 10080_3 --trglabel ./lh.BA1.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA1.label --trgsubject 10080_3 --trglabel ./lh.BA1.label --hemi lh --regmethod surface 7758c7817 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA1.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA1.label 7774,7775c7833,7834 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 7780c7839 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 7783c7842 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 7785c7844 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 7791c7850 < Number of reverse mapping hits = 257 --- > Number of reverse mapping hits = 252 7793c7852 < Writing label file ./lh.BA1.label 4386 --- > Writing label file ./lh.BA1.label 4381 7798c7857 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA2.label --trgsubject 10080_3 --trglabel ./lh.BA2.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA2.label --trgsubject 10080_3 --trglabel ./lh.BA2.label --hemi lh --regmethod surface 7801c7860 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA2.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA2.label 7817,7818c7876,7877 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 7823c7882 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 7826c7885 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 7828c7887 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 7834c7893 < Number of reverse mapping hits = 641 --- > Number of reverse mapping hits = 618 7836c7895 < Writing label file ./lh.BA2.label 8550 --- > Writing label file ./lh.BA2.label 8527 7841c7900 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA3a.label --trgsubject 10080_3 --trglabel ./lh.BA3a.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA3a.label --trgsubject 10080_3 --trglabel ./lh.BA3a.label --hemi lh --regmethod surface 7844c7903 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA3a.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA3a.label 7860,7861c7919,7920 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 7866c7925 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 7869c7928 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 7871c7930 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 7877c7936 < Number of reverse mapping hits = 110 --- > Number of reverse mapping hits = 122 7879c7938 < Writing label file ./lh.BA3a.label 4187 --- > Writing label file ./lh.BA3a.label 4199 7884c7943 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA3b.label --trgsubject 10080_3 --trglabel ./lh.BA3b.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA3b.label --trgsubject 10080_3 --trglabel ./lh.BA3b.label --hemi lh --regmethod surface 7887c7946 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA3b.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA3b.label 7903,7904c7962,7963 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 7909c7968 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 7912c7971 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 7914c7973 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 7920c7979 < Number of reverse mapping hits = 377 --- > Number of reverse mapping hits = 369 7922c7981 < Writing label file ./lh.BA3b.label 6360 --- > Writing label file ./lh.BA3b.label 6352 7927c7986 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA4a.label --trgsubject 10080_3 --trglabel ./lh.BA4a.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA4a.label --trgsubject 10080_3 --trglabel ./lh.BA4a.label --hemi lh --regmethod surface 7930c7989 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA4a.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA4a.label 7946,7947c8005,8006 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 7952c8011 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 7955c8014 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 7957c8016 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 7963c8022 < Number of reverse mapping hits = 325 --- > Number of reverse mapping hits = 338 7965c8024 < Writing label file ./lh.BA4a.label 6109 --- > Writing label file ./lh.BA4a.label 6122 7970c8029 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA4p.label --trgsubject 10080_3 --trglabel ./lh.BA4p.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA4p.label --trgsubject 10080_3 --trglabel ./lh.BA4p.label --hemi lh --regmethod surface 7973c8032 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA4p.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA4p.label 7989,7990c8048,8049 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 7995c8054 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 7998c8057 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 8000c8059 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 8006c8065 < Number of reverse mapping hits = 255 --- > Number of reverse mapping hits = 279 8008c8067 < Writing label file ./lh.BA4p.label 4325 --- > Writing label file ./lh.BA4p.label 4349 8013c8072 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA6.label --trgsubject 10080_3 --trglabel ./lh.BA6.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA6.label --trgsubject 10080_3 --trglabel ./lh.BA6.label --hemi lh --regmethod surface 8016c8075 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA6.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA6.label 8032,8033c8091,8092 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8038c8097 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 8041c8100 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 8043c8102 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 8049c8108 < Number of reverse mapping hits = 1071 --- > Number of reverse mapping hits = 1068 8051c8110 < Writing label file ./lh.BA6.label 14660 --- > Writing label file ./lh.BA6.label 14657 8056c8115 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA44.label --trgsubject 10080_3 --trglabel ./lh.BA44.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA44.label --trgsubject 10080_3 --trglabel ./lh.BA44.label --hemi lh --regmethod surface 8059c8118 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA44.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA44.label 8075,8076c8134,8135 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8081c8140 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 8084c8143 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 8086c8145 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 8092c8151 < Number of reverse mapping hits = 384 --- > Number of reverse mapping hits = 405 8094c8153 < Writing label file ./lh.BA44.label 4565 --- > Writing label file ./lh.BA44.label 4586 8099c8158 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA45.label --trgsubject 10080_3 --trglabel ./lh.BA45.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA45.label --trgsubject 10080_3 --trglabel ./lh.BA45.label --hemi lh --regmethod surface 8102c8161 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.BA45.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.BA45.label 8118,8119c8177,8178 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8124c8183 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 8127c8186 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 8129c8188 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 8135c8194 < Number of reverse mapping hits = 725 --- > Number of reverse mapping hits = 707 8137c8196 < Writing label file ./lh.BA45.label 4147 --- > Writing label file ./lh.BA45.label 4129 8142c8201 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.V1.label --trgsubject 10080_3 --trglabel ./lh.V1.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.V1.label --trgsubject 10080_3 --trglabel ./lh.V1.label --hemi lh --regmethod surface 8145c8204 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.V1.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.V1.label 8161,8162c8220,8221 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8167c8226 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 8170c8229 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 8172c8231 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 8178c8237 < Number of reverse mapping hits = 863 --- > Number of reverse mapping hits = 858 8180c8239 < Writing label file ./lh.V1.label 5504 --- > Writing label file ./lh.V1.label 5499 8185c8244 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.V2.label --trgsubject 10080_3 --trglabel ./lh.V2.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.V2.label --trgsubject 10080_3 --trglabel ./lh.V2.label --hemi lh --regmethod surface 8188c8247 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.V2.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.V2.label 8204,8205c8263,8264 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8210c8269 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 8213c8272 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 8215c8274 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 8221c8280 < Number of reverse mapping hits = 2896 --- > Number of reverse mapping hits = 2238 8223c8282 < Writing label file ./lh.V2.label 11010 --- > Writing label file ./lh.V2.label 10352 8228c8287 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.MT.label --trgsubject 10080_3 --trglabel ./lh.MT.label --hemi lh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/lh.MT.label --trgsubject 10080_3 --trglabel ./lh.MT.label --hemi lh --regmethod surface 8231c8290 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/lh.MT.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/lh.MT.label 8247,8248c8306,8307 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8253c8312 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/lh.sphere.reg 8256c8315 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white 8258c8317 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg 8264c8323 < Number of reverse mapping hits = 208 --- > Number of reverse mapping hits = 190 8266c8325 < Writing label file ./lh.MT.label 2226 --- > Writing label file ./lh.MT.label 2208 8271c8330 < mris_label2annot --s 10080_3 --hemi lh --ctab /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --a BA --maxstatwinner --noverbose --- > mris_label2annot --s 10080_3 --hemi lh --ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --a BA --maxstatwinner --noverbose 8273c8332 < Reading ctab /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt --- > Reading ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt 8277,8278c8336,8337 < cwd /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label < cmdline mris_label2annot --s 10080_3 --hemi lh --ctab /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --a BA --maxstatwinner --noverbose --- > cwd /N/dc/projects/shenlab/subjects/10080_3/label > cmdline mris_label2annot --s 10080_3 --hemi lh --ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt --l lh.BA1.label --l lh.BA2.label --l lh.BA3a.label --l lh.BA3b.label --l lh.BA4a.label --l lh.BA4p.label --l lh.BA6.label --l lh.BA44.label --l lh.BA45.label --l lh.V1.label --l lh.V2.label --l lh.MT.label --a BA --maxstatwinner --noverbose 8280c8339 < hostname nid00048 --- > hostname q0190 8286,8287c8345,8346 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < ColorTable /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > ColorTable /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt 8291c8350 < Loading /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.orig --- > Loading /N/dc/projects/shenlab/subjects/10080_3/surf/lh.orig 8305,8306c8364,8365 < Found 85111 unhit vertices < Writing annot to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/lh.BA.annot --- > Found 86081 unhit vertices > Writing annot to /N/dc/projects/shenlab/subjects/10080_3/label/lh.BA.annot 8311,8314c8370,8373 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... < reading input pial surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.pial... < reading input white surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... > reading input pial surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.pial... > reading input white surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... 8317c8376 < colortable with 13 entries read (originally /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt) --- > colortable with 13 entries read (originally /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt) 8331,8342c8390,8401 < 934 589 1862 2.312 0.446 0.196 0.176 51 6.7 BA1 < 3656 2454 5869 2.191 0.513 0.173 0.180 209 29.3 BA2 < 892 608 876 1.718 0.352 0.119 0.038 7 1.4 BA3a < 2095 1455 3294 1.961 0.631 0.160 0.065 35 5.8 BA3b < 1496 943 2895 2.614 0.417 0.158 0.156 68 11.8 BA4a < 1287 807 1886 2.464 0.426 0.145 0.354 43 5.9 BA4p < 7487 5126 16894 2.721 0.627 0.199 0.198 619 64.5 BA6 < 2040 1383 3846 2.511 0.426 0.186 0.167 92 15.2 BA44 < 2991 2070 5603 2.302 0.505 0.174 0.091 89 11.9 BA45 < 2723 1733 3321 1.742 0.503 0.169 0.109 145 14.4 V1 < 8281 5227 11238 1.898 0.604 0.177 0.104 248 35.5 V2 < 1464 1002 2546 2.288 0.564 0.191 0.131 135 8.4 MT --- > 949 597 1886 2.310 0.455 0.191 0.151 48 6.4 BA1 > 3614 2412 5713 2.187 0.516 0.172 0.181 209 29.4 BA2 > 893 607 871 1.721 0.353 0.119 0.037 6 1.4 BA3a > 2092 1454 3306 1.959 0.628 0.161 0.076 38 5.9 BA3b > 1500 946 2912 2.611 0.413 0.158 0.150 67 11.1 BA4a > 1289 811 1899 2.472 0.423 0.145 0.353 43 5.9 BA4p > 7432 5096 16868 2.726 0.630 0.198 0.195 505 73.3 BA6 > 2017 1368 3808 2.522 0.425 0.187 0.163 100 14.5 BA44 > 3024 2095 5649 2.294 0.503 0.174 0.104 93 11.3 BA45 > 2720 1738 3350 1.749 0.509 0.170 0.110 146 14.4 V1 > 7418 4659 10050 1.903 0.516 0.179 0.598 394 32.4 V2 > 1428 976 2497 2.301 0.585 0.197 0.141 139 8.9 MT 8344c8403 < #@# BA Labels rh Tue Aug 20 18:55:42 EDT 2013 --- > #@# BA Labels rh Wed Aug 21 10:06:22 EDT 2013 8346c8405 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA1.label --trgsubject 10080_3 --trglabel ./rh.BA1.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA1.label --trgsubject 10080_3 --trglabel ./rh.BA1.label --hemi rh --regmethod surface 8349c8408 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA1.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA1.label 8365,8366c8424,8425 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8371c8430 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8374c8433 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8376c8435 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8382c8441 < Number of reverse mapping hits = 255 --- > Number of reverse mapping hits = 223 8384c8443 < Writing label file ./rh.BA1.label 4217 --- > Writing label file ./rh.BA1.label 4185 8389c8448 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA2.label --trgsubject 10080_3 --trglabel ./rh.BA2.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA2.label --trgsubject 10080_3 --trglabel ./rh.BA2.label --hemi rh --regmethod surface 8392c8451 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA2.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA2.label 8408,8409c8467,8468 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8414c8473 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8417c8476 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8419c8478 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8425c8484 < Number of reverse mapping hits = 298 --- > Number of reverse mapping hits = 280 8427c8486 < Writing label file ./rh.BA2.label 6985 --- > Writing label file ./rh.BA2.label 6967 8432c8491 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA3a.label --trgsubject 10080_3 --trglabel ./rh.BA3a.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA3a.label --trgsubject 10080_3 --trglabel ./rh.BA3a.label --hemi rh --regmethod surface 8435c8494 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA3a.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA3a.label 8451,8452c8510,8511 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8457c8516 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8460c8519 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8462c8521 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8468c8527 < Number of reverse mapping hits = 152 --- > Number of reverse mapping hits = 148 8470c8529 < Writing label file ./rh.BA3a.label 4132 --- > Writing label file ./rh.BA3a.label 4128 8475c8534 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA3b.label --trgsubject 10080_3 --trglabel ./rh.BA3b.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA3b.label --trgsubject 10080_3 --trglabel ./rh.BA3b.label --hemi rh --regmethod surface 8478c8537 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA3b.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA3b.label 8494,8495c8553,8554 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8500c8559 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8503c8562 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8505c8564 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8511c8570 < Number of reverse mapping hits = 262 --- > Number of reverse mapping hits = 228 8513c8572 < Writing label file ./rh.BA3b.label 4784 --- > Writing label file ./rh.BA3b.label 4750 8518c8577 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA4a.label --trgsubject 10080_3 --trglabel ./rh.BA4a.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA4a.label --trgsubject 10080_3 --trglabel ./rh.BA4a.label --hemi rh --regmethod surface 8521c8580 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA4a.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA4a.label 8537,8538c8596,8597 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8543c8602 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8546c8605 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8548c8607 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8554c8613 < Number of reverse mapping hits = 453 --- > Number of reverse mapping hits = 737 8556c8615 < Writing label file ./rh.BA4a.label 6200 --- > Writing label file ./rh.BA4a.label 6484 8561c8620 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA4p.label --trgsubject 10080_3 --trglabel ./rh.BA4p.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA4p.label --trgsubject 10080_3 --trglabel ./rh.BA4p.label --hemi rh --regmethod surface 8564c8623 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA4p.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA4p.label 8580,8581c8639,8640 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8586c8645 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8589c8648 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8591c8650 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8597c8656 < Number of reverse mapping hits = 285 --- > Number of reverse mapping hits = 293 8599c8658 < Writing label file ./rh.BA4p.label 4758 --- > Writing label file ./rh.BA4p.label 4766 8604c8663 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA6.label --trgsubject 10080_3 --trglabel ./rh.BA6.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA6.label --trgsubject 10080_3 --trglabel ./rh.BA6.label --hemi rh --regmethod surface 8607c8666 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA6.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA6.label 8623,8624c8682,8683 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8629c8688 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8632c8691 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8634c8693 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8640c8699 < Number of reverse mapping hits = 1946 --- > Number of reverse mapping hits = 2128 8642c8701 < Writing label file ./rh.BA6.label 14202 --- > Writing label file ./rh.BA6.label 14384 8647c8706 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA44.label --trgsubject 10080_3 --trglabel ./rh.BA44.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA44.label --trgsubject 10080_3 --trglabel ./rh.BA44.label --hemi rh --regmethod surface 8650c8709 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA44.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA44.label 8666,8667c8725,8726 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8672c8731 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8675c8734 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8677c8736 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8683c8742 < Number of reverse mapping hits = 546 --- > Number of reverse mapping hits = 545 8685c8744 < Writing label file ./rh.BA44.label 7458 --- > Writing label file ./rh.BA44.label 7457 8690c8749 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA45.label --trgsubject 10080_3 --trglabel ./rh.BA45.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA45.label --trgsubject 10080_3 --trglabel ./rh.BA45.label --hemi rh --regmethod surface 8693c8752 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.BA45.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.BA45.label 8709,8710c8768,8769 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8715c8774 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8718c8777 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8720c8779 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8726c8785 < Number of reverse mapping hits = 753 --- > Number of reverse mapping hits = 762 8728c8787 < Writing label file ./rh.BA45.label 6108 --- > Writing label file ./rh.BA45.label 6117 8733c8792 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.V1.label --trgsubject 10080_3 --trglabel ./rh.V1.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.V1.label --trgsubject 10080_3 --trglabel ./rh.V1.label --hemi rh --regmethod surface 8736c8795 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.V1.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.V1.label 8752,8753c8811,8812 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8758c8817 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8761c8820 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8763c8822 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8769c8828 < Number of reverse mapping hits = 1311 --- > Number of reverse mapping hits = 1260 8771c8830 < Writing label file ./rh.V1.label 6038 --- > Writing label file ./rh.V1.label 5987 8776c8835 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.V2.label --trgsubject 10080_3 --trglabel ./rh.V2.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.V2.label --trgsubject 10080_3 --trglabel ./rh.V2.label --hemi rh --regmethod surface 8779c8838 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.V2.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.V2.label 8795,8796c8854,8855 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8801c8860 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8804c8863 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8806c8865 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8812c8871 < Number of reverse mapping hits = 2656 --- > Number of reverse mapping hits = 2636 8814c8873 < Writing label file ./rh.V2.label 10672 --- > Writing label file ./rh.V2.label 10652 8819c8878 < mri_label2label --srcsubject fsaverage --srclabel /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.MT.label --trgsubject 10080_3 --trglabel ./rh.MT.label --hemi rh --regmethod surface --- > mri_label2label --srcsubject fsaverage --srclabel /N/dc/projects/shenlab/subjects/fsaverage/label/rh.MT.label --trgsubject 10080_3 --trglabel ./rh.MT.label --hemi rh --regmethod surface 8822c8881 < srclabel = /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/label/rh.MT.label --- > srclabel = /N/dc/projects/shenlab/subjects/fsaverage/label/rh.MT.label 8838,8839c8897,8898 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < FREESURFER_HOME /N/soft/cle4/freesurfer/5.1.0 --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > FREESURFER_HOME /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0 8844c8903 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/fsaverage/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/fsaverage/surf/rh.sphere.reg 8847c8906 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white 8849c8908 < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg --- > /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg 8855c8914 < Number of reverse mapping hits = 302 --- > Number of reverse mapping hits = 329 8857c8916 < Writing label file ./rh.MT.label 2234 --- > Writing label file ./rh.MT.label 2261 8862c8921 < mris_label2annot --s 10080_3 --hemi rh --ctab /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --a BA --maxstatwinner --noverbose --- > mris_label2annot --s 10080_3 --hemi rh --ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --a BA --maxstatwinner --noverbose 8864c8923 < Reading ctab /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt --- > Reading ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt 8868,8869c8927,8928 < cwd /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label < cmdline mris_label2annot --s 10080_3 --hemi rh --ctab /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --a BA --maxstatwinner --noverbose --- > cwd /N/dc/projects/shenlab/subjects/10080_3/label > cmdline mris_label2annot --s 10080_3 --hemi rh --ctab /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt --l rh.BA1.label --l rh.BA2.label --l rh.BA3a.label --l rh.BA3b.label --l rh.BA4a.label --l rh.BA4p.label --l rh.BA6.label --l rh.BA44.label --l rh.BA45.label --l rh.V1.label --l rh.V2.label --l rh.MT.label --a BA --maxstatwinner --noverbose 8871c8930 < hostname nid00048 --- > hostname q0190 8877,8878c8936,8937 < SUBJECTS_DIR /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 < ColorTable /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt --- > SUBJECTS_DIR /N/dc/projects/shenlab/subjects > ColorTable /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt 8882c8941 < Loading /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.orig --- > Loading /N/dc/projects/shenlab/subjects/10080_3/surf/rh.orig 8896,8897c8955,8956 < Found 84038 unhit vertices < Writing annot to /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label/rh.BA.annot --- > Found 83262 unhit vertices > Writing annot to /N/dc/projects/shenlab/subjects/10080_3/label/rh.BA.annot 8902,8905c8961,8964 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... < reading input pial surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.pial... < reading input white surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... > reading input pial surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.pial... > reading input white surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... 8908c8967 < colortable with 13 entries read (originally /N/soft/cle4/freesurfer/5.1.0/average/colortable_BA.txt) --- > colortable with 13 entries read (originally /N/soft/linux-rhel4_AS-x86_64/freesurfer-5.1.0/average/colortable_BA.txt) 8922,8934c8981,8993 < 904 456 1470 2.341 0.510 0.169 0.115 40 5.1 BA1 < 2701 1806 3606 1.960 0.431 0.126 0.088 59 6.2 BA2 < 955 666 885 1.600 0.368 0.134 0.052 9 2.0 BA3a < 1822 1160 2332 1.761 0.461 0.139 0.078 70 6.1 BA3b < 1533 866 2624 2.588 0.411 0.141 0.094 168 6.0 BA4a < 1247 750 1759 2.478 0.478 0.146 0.113 50 7.0 BA4p < 8234 5342 16782 2.575 0.738 0.200 0.287 1822 62.1 BA6 < 3027 2029 5388 2.439 0.504 0.165 0.093 78 12.2 BA44 < 3539 2418 6921 2.404 0.640 0.184 0.134 137 16.3 BA45 < 3342 2083 4392 1.846 0.514 0.189 0.354 256 21.6 V1 < 7655 4860 10711 2.012 0.518 0.181 0.102 226 34.4 V2 < 1646 1158 2995 2.364 0.618 0.191 0.130 56 8.4 MT < /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/label --- > 860 435 1447 2.375 0.533 0.174 0.119 36 5.0 BA1 > 2784 1847 3737 1.978 0.435 0.125 0.088 60 6.3 BA2 > 968 677 907 1.624 0.373 0.135 0.055 10 2.1 BA3a > 1844 1173 2347 1.758 0.458 0.140 0.079 75 6.4 BA3b > 1856 1092 3147 2.504 0.528 0.139 0.086 170 5.9 BA4a > 1282 755 1809 2.515 0.502 0.146 0.119 52 7.8 BA4p > 8538 5591 17019 2.510 0.814 0.199 0.280 1835 62.9 BA6 > 3091 2067 5499 2.432 0.503 0.165 0.096 81 12.3 BA44 > 3533 2414 6920 2.425 0.612 0.183 0.132 135 16.5 BA45 > 3282 2046 4313 1.841 0.502 0.187 0.355 244 21.0 V1 > 7685 4881 10888 2.034 0.513 0.183 0.104 233 35.2 V2 > 1658 1163 3049 2.407 0.595 0.193 0.121 53 8.1 MT > /N/dc/projects/shenlab/subjects/10080_3/label 8936c8995 < #@# Ex-vivo Entorhinal Cortex Label lh Tue Aug 20 18:57:52 EDT 2013 --- > #@# Ex-vivo Entorhinal Cortex Label lh Wed Aug 21 10:08:45 EDT 2013 8942c9001 < reading output surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.sphere.reg... --- > reading output surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.sphere.reg... 8946c9005 < writing label with 497 points to lh.entorhinal_exvivo.label... --- > writing label with 783 points to lh.entorhinal_exvivo.label... 8952,8955c9011,9014 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... < reading input pial surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.pial... < reading input white surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/lh.white... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... > reading input pial surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.pial... > reading input white surface /N/dc/projects/shenlab/subjects/10080_3/surf/lh.white... 8969c9028 < 134 98 69 0.697 0.540 0.161 0.064 2 0.4 ./lh.entorhinal_exvivo.label --- > 295 185 1038 3.415 0.591 0.139 0.059 4 0.9 ./lh.entorhinal_exvivo.label 8971c9030 < #@# Ex-vivo Entorhinal Cortex Label rh Tue Aug 20 18:58:07 EDT 2013 --- > #@# Ex-vivo Entorhinal Cortex Label rh Wed Aug 21 10:09:06 EDT 2013 8977c9036 < reading output surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.sphere.reg... --- > reading output surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.sphere.reg... 8981c9040 < writing label with 735 points to rh.entorhinal_exvivo.label... --- > writing label with 719 points to rh.entorhinal_exvivo.label... 8987,8990c9046,9049 < reading volume /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri/wm.mgz... < reading input surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... < reading input pial surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.pial... < reading input white surface /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/surf/rh.white... --- > reading volume /N/dc/projects/shenlab/subjects/10080_3/mri/wm.mgz... > reading input surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... > reading input pial surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.pial... > reading input white surface /N/dc/projects/shenlab/subjects/10080_3/surf/rh.white... 9004c9063 < 282 168 993 3.447 0.686 0.156 0.251 13 4.6 ./rh.entorhinal_exvivo.label --- > 270 167 1060 3.564 0.630 0.155 0.264 12 4.5 ./rh.entorhinal_exvivo.label 9006c9065 < #@# Hippocampal Subfields processing Tue Aug 20 18:58:23 EDT 2013 --- > #@# Hippocampal Subfields processing Wed Aug 21 10:09:26 EDT 2013 9008c9067 < mkdir -p /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/tmp/subfieldResults --- > mkdir -p /N/dc/projects/shenlab/subjects/10080_3/tmp/subfieldResults 9010c9069 < kvlSegmentHippocampalSubfields.sh 10080_3 left /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/tmp/subfieldResults --- > kvlSegmentHippocampalSubfields.sh 10080_3 left /N/dc/projects/shenlab/subjects /N/dc/projects/shenlab/subjects/10080_3/tmp/subfieldResults 9013c9072 < kvlSegmentHippocampalSubfields.sh 10080_3 right /N/dc2/scratch/jdwest/subjects_FSfromBigRed2 /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/tmp/subfieldResults --- > kvlSegmentHippocampalSubfields.sh 10080_3 right /N/dc/projects/shenlab/subjects /N/dc/projects/shenlab/subjects/10080_3/tmp/subfieldResults 9016c9075 < cp /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/tmp/subfieldResults/10080_3/left/segmentationWithoutPartialVolumingLog/posterior_left* /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > cp /N/dc/projects/shenlab/subjects/10080_3/tmp/subfieldResults/10080_3/left/segmentationWithoutPartialVolumingLog/posterior_left* /N/dc/projects/shenlab/subjects/10080_3/mri 9019c9078 < cp /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/tmp/subfieldResults/10080_3/left/segmentationWithoutPartialVolumingLog/posterior_Left* /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > cp /N/dc/projects/shenlab/subjects/10080_3/tmp/subfieldResults/10080_3/left/segmentationWithoutPartialVolumingLog/posterior_Left* /N/dc/projects/shenlab/subjects/10080_3/mri 9022c9081 < cp /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/tmp/subfieldResults/10080_3/right/segmentationWithoutPartialVolumingLog/posterior_right* /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > cp /N/dc/projects/shenlab/subjects/10080_3/tmp/subfieldResults/10080_3/right/segmentationWithoutPartialVolumingLog/posterior_right* /N/dc/projects/shenlab/subjects/10080_3/mri 9025c9084 < cp /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/tmp/subfieldResults/10080_3/right/segmentationWithoutPartialVolumingLog/posterior_Right* /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/mri --- > cp /N/dc/projects/shenlab/subjects/10080_3/tmp/subfieldResults/10080_3/right/segmentationWithoutPartialVolumingLog/posterior_Right* /N/dc/projects/shenlab/subjects/10080_3/mri 9028c9087 < rm -rf /N/dc2/scratch/jdwest/subjects_FSfromBigRed2/10080_3/tmp/subfieldResults --- > rm -rf /N/dc/projects/shenlab/subjects/10080_3/tmp/subfieldResults 9033c9092 < recon-all -s 10080_3 finished without error at Tue Aug 20 21:08:03 EDT 2013 --- > recon-all -s 10080_3 finished without error at Wed Aug 21 12:50:45 EDT 2013