On Thu, Mar 3, 2016 at 12:24 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:

Can you send me rh_time_spval.mgh?

On 03/01/2016 04:42 PM, Jennifer Legault wrote:
> Hi Doug,
>
> Thank you for responding. I actually realized what was the matter (I
> had specified the path for fsaverage which led to the error; this is
> no longer an issue so long as I use "--subject fsaverage" instead of
> "--subject /path/fsaverage."
>
> Here is the command I've been running for mri_surfcluster:
>
> mri_surfcluster --subject fsaverage --hemi rh --in
> /path/rh_time_spval.mgh --csd
> /usr/global/freesurfer/5.3.0/freesurfer/average/mult-comp-cor/fsaverage/rh/cortex/fwhm01/pos/th40/mc-z.csd
> --cwpvalthresh 0.0001 --fdr .05 --no-fixmni --annot aparc --sign pos
> --o /path/rh_time_cluster_cwp0001.mgh --cwsig
> /path/rh_time_cluster_mni_cwp0001.mgh --sum
> /path/rh_time_cluster_mni_sum
>
>
> I do consistently have an issue though where the final output seems to
> be inaccurate (even with CWP of p<.0001 and FDR correction, I receive
> over 800 significant clusters). I am assuming this is a problem with
> the LME multivariate analysis script, although I am not exactly sure
> which part of the script needs to be changed. Attached is a
> screenshot of the output (visualized with freeview), as well as the
> matlab script and the qdec file (with fsid, fsid-base, MRI (time),
> group, and eTIV as columns). This script is geared towards examining
> changes in the brain after cognitive training lasting 2-3 weeks. If
> you have the time to look over this and let me know of any
> recommendations you have, it would be greatly appreciated.
>
> Best,
>
> Jennifer Legault
>
> On Tue, Mar 1, 2016 at 3:27 PM, Douglas N Greve
> <greve@nmr.mgh.harvard.edu> wrote:
>> can you send your command line and terminal output?
>>
>> On 02/25/2016 01:52 PM, Jennifer Legault wrote:
>>> Hi Douglas,
>>>
>>> Thank you for all your help. When I say "volume" I do mean the FS
>>> thickness*area measure. I ran the mri_glmfit with --osgm and for the
>>> FWHM received the value of .925737. Assuming that this rounds up to 1,
>>> I then went to $FREESURFER_HOME/average/mult-comp-cor/fsaverage to
>>> find the CSD file and I selected the fwhm01 csd file.
>>>
>>> I then ran the mri_surfcluster command, however, I got the following
>>> error:
>>>
>>> ERROR: you have specified srcsubjid=fsaverage on cmdline, but
>>> CSD file was created with fsaverage
>>>
>>> Any suggestions you have would be appreciated.
>>>
>>> Best,
>>>
>>> Jen
>>>
>>> On Thu, Feb 11, 2016 at 1:32 PM, Douglas N Greve
>>> <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
>>>
>>> by "volume" do you mean a VBM-type analysis or do you mean the volume
>>> that comes out of FS (thickness*area)? If you are going to use a
>>> clusterwise correction, then you have to have a FWHM measurement. You
>>> can try analyzing it in mri_glmfit with --osgm just to get the
>>> FWHM out
>>> of it.
>>>
>>> You should be able to output a .mgh file instead of a .w file
>>>
>>>
>>> On 02/11/2016 01:07 PM, Jennifer Legault wrote:
>>> > That's very useful, thank you. In terms of FWHM, I am examining
>>> gray
>>> > matter volume, not cortical thickness, and was previously instructed
>>> > by Martin Reuter not to smooth these data. Do you think it
>>> would make
>>> > sense then to just use the fwhm01? And in terms of the voxel-wise
>>> > threshold, is there a commonly used value for GM volume data? I am
>>> > still new to freesurfer and I appreciate any feedback.
>>> >
>>> > For visualization, after I run the mri_surfcluster the only outputs
>>> > are a summary file and a .w file, and freeview doesn't accept this
>>> > format. Is it possible to have a cluster-wise corrected map (a
>>> > sig.cluster.mgh file) as they do for the Clusterwise Correction for
>>> > Multiple Comparisons tutorial here
>>> >
>>> <https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis>?
>>> >
>>> >
>>> > Best,
>>> >
>>> > Jen
>>> >
>>> > On Thu, Feb 11, 2016 at 11:39 AM, Douglas N Greve
>>> > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>>> <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>> wrote:
>>> >
>>> >
>>> >
>>> > On 02/11/2016 11:19 AM, Jennifer Legault wrote:
>>> > > Thank you for your response. Do I need to run the glm_fit-sim
>>> > command
>>> > > to make the csd file? I feel this would be inappropriate
>>> for my
>>> > data
>>> > > since I already ran the LME model.
>>> > No, look in
>>> $FREESURFER_HOME/average/mult-comp-cor/fsaverage. You will
>>> > need the FWHM though
>>> > >
>>> > > Second, is there an argument to make an output file that
>>> can be
>>> > > visualized via freeview? In other words, how can I view
>>> my cluster
>>> > > thresholded data?
>>> > You can use freeview, something like
>>> > freeview -f lh.inflated:overlay=sig.mgh
>>> > There are other options for loading annotations and
>>> curvature. See the
>>> > freeview help
>>> > >
>>> > > Your help is greatly appreciated,
>>> > >
>>> > > Jen
>>> > >
>>> > >
>>> > >
>>> > > On Wed, Feb 10, 2016 at 11:04 PM, Douglas Greve
>>> > > <greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>>> > <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>>> > >
>>> > > There is a (very long) command line on that page. Mainly you
>>> > need
>>> > > a csd file. To get that you need the FWHM of your
>>> analysis, the
>>> > > voxel-wise threshold, and the sign of the contrast (or
>>> abs).
>>> > Then
>>> > > the relevant output will be the --sum. You can run it with
>>> > --help
>>> > > to get more info.
>>> > >
>>> > >
>>> > > On 2/10/16 5:11 PM, Jennifer Legault wrote:
>>> > >> Thank you very much for your help! I still received a
>>> "cannot
>>> > >> read file type" error when I only added the path to
>>> the output
>>> > >> --o part, however when I also added the path to the
>>> input file,
>>> > >> it worked!
>>> > >>
>>> > >> I do have one more question: Which argument can I add so
>>> > that in
>>> > >> my output file I see the clusterwise P value, like it
>>> is shown
>>> > >> here
>>> > >>
>>> >
>>> <https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysisClusterSummary>?
>>> > >>
>>> > >> Best,
>>> > >>
>>> > >> Jen
>>> > >>
>>> > >> On Wed, Feb 10, 2016 at 1:50 PM, Douglas N Greve
>>> > >> <greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
>>> > >>
>>> > >> I meant for the output files, so the --o in
>>> particular
>>> > >>
>>> > >> On 02/10/2016 01:47 PM, Jennifer Legault wrote:
>>> > >> > Douglas,
>>> > >> >
>>> > >> > Thank you for your quick response. When I add --sd
>>> > >> [path_location], I
>>> > >> > get the following error:
>>> > >> > Loading source values
>>> > >> > mri_read(): couldn't determine type of file
>>> > >> [path_location]/rh_time_spval
>>> > >> > ERROR: could not read rh_time_spval as type
>>> > >> >
>>> > >> > Should I use another argument?
>>> > >> >
>>> > >> > Best,
>>> > >> >
>>> > >> > Jen
>>> > >> >
>>> > >> >
>>> > >> >
>>> > >> > On Wed, Feb 10, 2016 at 1:41 PM, Douglas N Greve
>>> > >> > <greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>
>>> > >> <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>>
>>> > >> <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>
>>> > >> <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>>>> wrote:
>>> > >> >
>>> > >> > Try specifying the full path to the output
>>> > >> >
>>> > >> > On 02/10/2016 12:59 PM, Jennifer Legault wrote:
>>> > >> > > Dear experts,
>>> > >> > >
>>> > >> > > I am trying to use the cluster
>>> thresholding command
>>> > >> for my
>>> > >> > freesurfer
>>> > >> > > LME outputs as referred to here
>>> > >> > >
>>> > >> >
>>> > >>
>>> >
>>> <https://surfer.nmr.mgh.harvard.edu/fswiki/LinearMixedEffectsModels>.
>>> > >> > > Any feedback or comments would be greatly
>>> > appreciated.
>>> > >> > >
>>> > >> > > I am aware that there have been
>>> permission denied
>>> > >> errors when using
>>> > >> > > mri_surfcluster and that applying this patch
>>> > >> > >
>>> > >> >
>>> > >>
>>> >
>>> <ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/mni152reg>
>>> > >> > > should solve the problem (which I tried),
>>> however I
>>> > >> am still either
>>> > >> > > receiving errors stating the permission
>>> is denied.
>>> > >> > >
>>> > >> > > This is the command I am trying to run:
>>> > >> > >
>>> > >> > > mri_surfcluster --subject fsaverage
>>> --hemi rh --in
>>> > >> > rh_time_spval.mgh
>>> > >> > > --cwpvalthresh 0.05 --fdr .05 --sign pos --o
>>> > >> rh_time_cluster --sum
>>> > >> > > rh_time_cluster_sum
>>> > >> > >
>>> > >> > >
>>> > >> > > Here is the error log:
>>> > >> > >
>>> > >> > > mri_surfcluster --subject fsaverage
>>> --hemi rh --in
>>> > >> rh_time_spval.mgh
>>> > >> > > --cwpvalthresh 0.05 --fdr .05 --sign pos --o
>>> > >> rh_time_cluster --sum
>>> > >> > > rh_time_cluster_sum thsign = pos, id = 1
>>> > >> > > version $Id: mri_surfcluster.c,v 1.51.2.3
>>> > 2012/05/31
>>> > >> 22:10:05
>>> > >> > greve Exp $
>>> > >> > > hemi = rh
>>> > >> > > srcid = rh_time_spval.mgh
>>> > >> > > srcsubjid = fsaverage
>>> > >> > > srcsurf = white
>>> > >> > > srcframe = 0
>>> > >> > > thsign = pos
>>> > >> > > thmin = -1
>>> > >> > > thmax = -1
>>> > >> > > fdr = 0.05
>>> > >> > > minarea = 0
>>> > >> > > xfmfile = talairach.xfm
>>> > >> > > nth = -1
>>> > >> > > outid = rh_time_cluster paint
>>> > >> > > sumfile = rh_time_cluster_sum
>>> > >> > > subjectsdir =
>>> /gpfs/home/jtl190/work/structurals
>>> > >> > > FixMNI = 1
>>> > >> > > ------------- XFM matrix (RAS2RAS)
>>> ---------------
>>> > >> > >
>>> > >> >
>>> > >>
>>> >
>>> /gpfs/home/jtl190/work/structurals/fsaverage/mri/transforms/talairach.xfm
>>> > >> > > 1.000 0.000 0.000 0.000;
>>> > >> > > 0.000 1.000 0.000 0.000;
>>> > >> > > 0.000 0.000 1.000 0.000;
>>> > >> > > 0.000 0.000 0.000 1.000;
>>> > >> > >
>>> > ----------------------------------------------------
>>> > >> > > Reading source surface
>>> > >> > >
>>> > >> /gpfs/home/jtl190/work/structurals/fsaverage/surf/rh.white
>>> > >> > > Done reading source surface
>>> > >> > > Computing metric properties
>>> > >> > > Loading source values
>>> > >> > > number of voxels in search space = 163842
>>> > >> > > Done loading source values (nvtxs = 163842)
>>> > >> > > overall max = 1 at vertex 27
>>> > >> > > overall min = 1.52021e-05 at vertex 125620
>>> > >> > > surface nvertices 163842
>>> > >> > > surface area 65020.929688
>>> > >> > > surface area 65020.765625
>>> > >> > > Setting voxel-wise threshold with FDR =
>>> 0.050000
>>> > >> > > Assuming input map is -log10(p)
>>> > >> > > MRISfdr2vwth(): np = 163842, nv = 163842,
>>> fdr =
>>> > 0.05,
>>> > >> vwth=1.04576
>>> > >> > > FDR Voxel-wise threshold is 1.04576
>>> > >> > > Adjusting threshold for 1-tailed test.
>>> > >> > > If the input is not a -log10(p) volume,
>>> re-run with
>>> > >> --no-adjust.
>>> > >> > > Searching for Clusters ...
>>> > >> > > thmin=1.045757 (0.744727),
>>> thmax=-1.000000 (-1),
>>> > >> thsignid=1,
>>> > >> > > minarea=0.000000
>>> > >> > > Found 9803 clusters
>>> > >> > > Max cluster size 5993.586426
>>> > >> > > INFO: fixing MNI talairach coordinates
>>> > >> > > Saving thresholded output to rh_time_cluster
>>> > >> > > Can't create file
>>> > >> > >
>>> > >> >
>>> > >>
>>> >
>>> /gpfs/home/jtl190/work/structurals/fsaverage/surf/rh.rh_time_cluster.w
>>> > >> > >
>>> > >> > > Permission denied
>>> > >> > >
>>> > >> > >
>>> > >> > >
>>> > >> > >
>>> > >> > > Thank you for taking the time to read
>>> this email.
>>> > >> > >
>>> > >> > > Sincerely,
>>> > >> > >
>>> > >> > > Jennifer Legault
>>> > >> > >
>>> > >> > > --
>>> > >> > > Jennifer Legault
>>> > >> > > Ph.D candidate, Neuroscience
>>> > >> > > Brain, Language, and Computation Lab
>>> > >> > > The Pennsylvania State University
>>> > >> > >
>>> > >> > >
>>> > >> > >
>>> _______________________________________________
>>> > >> > > Freesurfer mailing list
>>> > >> > > Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>> > >> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>>> > >> >
>>> > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>> > >> >
>>> > >> > --
>>> > >> > Douglas N. Greve, Ph.D.
>>> > >> > MGH-NMR Center
>>> > >> > greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>
>>> > >> <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>>
>>> > >> <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>
>>> > >> <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>>>>
>>> > >> > Phone Number: 617-724-2358 <tel:617-724-2358> <tel:617-724-2358
>>> <tel:617-724-2358>>
>>> > <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358
>>> <tel:617-724-2358>>>
>>> > >> <tel:617-724-2358 <tel:617-724-2358>
>>> <tel:617-724-2358 <tel:617-724-2358>> <tel:617-724-2358
>>> <tel:617-724-2358>
>>> > <tel:617-724-2358 <tel:617-724-2358>>>>
>>> > >> > Fax: 617-726-7422 <tel:617-726-7422>
>>> <tel:617-726-7422 <tel:617-726-7422>>
>>> > <tel:617-726-7422 <tel:617-726-7422> <tel:617-726-7422
>>> <tel:617-726-7422>>> <tel:617-726-7422
>>> > <tel:617-726-7422>
>>> > >> <tel:617-726-7422 <tel:617-726-7422>>>
>>> > >> >
>>> > >> > Bugs:
>>> > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > >>
>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > >> >
>>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > >> > FileDrop:
>>> https://gate.nmr.mgh.harvard.edu/filedrop2
>>> > >> >
>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > >>
>>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > >> >
>>> > >>
>>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > >> > Outgoing:
>>> > >> >
>>> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>> > >> >
>>> > >> > _______________________________________________
>>> > >> > Freesurfer mailing list
>>> > >> > Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>>
>>> > >> >
>>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>> > >> >
>>> > >> >
>>> > >> > The information in this e-mail is intended only
>>> > for the
>>> > >> person to
>>> > >> > whom it is
>>> > >> > addressed. If you believe this e-mail was
>>> sent to you
>>> > >> in error and
>>> > >> > the e-mail
>>> > >> > contains patient information, please
>>> contact the
>>> > Partners
>>> > >> > Compliance HelpLine at
>>> > >> > http://www.partners.org/complianceline . If the
>>> > e-mail was
>>> > >> sent to
>>> > >> > you in error
>>> > >> > but does not contain patient information,
>>> please
>>> > >> contact the
>>> > >> > sender and properly
>>> > >> > dispose of the e-mail.
>>> > >> >
>>> > >> >
>>> > >> >
>>> > >> >
>>> > >> > --
>>> > >> > Jennifer Legault
>>> > >> > Ph.D candidate, Neuroscience
>>> > >> > Brain, Language, and Computation Lab
>>> > >> > The Pennsylvania State University
>>> > >> >
>>> > >> >
>>> > >> > _______________________________________________
>>> > >> > Freesurfer mailing list
>>> > >> > Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>> > >> >
>>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>> > >>
>>> > >> --
>>> > >> Douglas N. Greve, Ph.D.
>>> > >> MGH-NMR Center
>>> > >> greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>>> > <mailto:greve@nmr.mgh.harvard.edu
>>> <mailto:greve@nmr.mgh.harvard.edu>
>>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>>
>>> > >> Phone Number: 617-724-2358 <tel:617-724-2358>
>>> > <tel:617-724-2358 <tel:617-724-2358>>
>>> > >> Fax: 617-726-7422 <tel:617-726-7422>
>>> <tel:617-726-7422
>>> > <tel:617-726-7422>>
>>> > >>
>>> > >> Bugs:
>>> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > >>
>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>> > >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > >>
>>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > >> Outgoing:
>>> > >>
>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>> > >>
>>> > >> _______________________________________________
>>> > >> Freesurfer mailing list
>>> > >> Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>> > >>
>>> > >>
>>> > >>
>>> > >>
>>> > >> --
>>> > >> Jennifer Legault
>>> > >> Ph.D candidate, Neuroscience
>>> > >> Brain, Language, and Computation Lab
>>> > >> The Pennsylvania State University
>>> > >>
>>> > >>
>>> > >> _______________________________________________
>>> > >> Freesurfer mailing list
>>> > >> Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > >> <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>> > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>> > >
>>> > >
>>> > > _______________________________________________
>>> > > Freesurfer mailing list
>>> > > Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>>
>>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>> > >
>>> > >
>>> > > The information in this e-mail is intended only for the
>>> > person to
>>> > > whom it is
>>> > > addressed. If you believe this e-mail was sent to you in
>>> > error and
>>> > > the e-mail
>>> > > contains patient information, please contact the Partners
>>> > > Compliance HelpLine at
>>> > > http://www.partners.org/complianceline . If the e-mail was
>>> sent to
>>> > > you in error
>>> > > but does not contain patient information, please
>>> contact the
>>> > > sender and properly
>>> > > dispose of the e-mail.
>>> > >
>>> > >
>>> > >
>>> > >
>>> > > --
>>> > > Jennifer Legault
>>> > > Ph.D candidate, Neuroscience
>>> > > Brain, Language, and Computation Lab
>>> > > The Pennsylvania State University
>>> > >
>>> > >
>>> > > _______________________________________________
>>> > > Freesurfer mailing list
>>> > > Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>> >
>>> > --
>>> > Douglas N. Greve, Ph.D.
>>> > MGH-NMR Center
>>> > greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>>> <mailto:greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>>> > Phone Number: 617-724-2358
>>> > Fax: 617-726-7422
>>> >
>>> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> > Outgoing:
>>> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>> >
>>> > _______________________________________________
>>> > Freesurfer mailing list
>>> > Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>>
>>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>> >
>>> >
>>> >
>>> >
>>> > --
>>> > Jennifer Legault
>>> > Ph.D candidate, Neuroscience
>>> > Brain, Language, and Computation Lab
>>> > The Pennsylvania State University
>>> >
>>> >
>>> > _______________________________________________
>>> > Freesurfer mailing list
>>> > Freesurfer@nmr.mgh.harvard.edu
>>> <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>> --
>>> Douglas N. Greve, Ph.D.
>>> MGH-NMR Center
>>> greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>>> Phone Number: 617-724-2358
>>> Fax: 617-726-7422
>>>
>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>> <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>>> Outgoing:
>>> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>>
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>>>
>>>
>>> --
>>> Jennifer Legault
>>> Ph.D candidate, Neuroscience
>>> Brain, Language, and Computation Lab
>>> The Pennsylvania State University
>>>
>>>
>>> _______________________________________________
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> --
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> greve@nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Jennifer Legault
Ph.D candidate, Neuroscience
Brain, Language, and Computation Lab
The Pennsylvania State University