Dear Freesurfers,

I am now encountering a new error with the Hinds V1 procedure:

I am still using the same version (5.1.0) and nothing has changed, except that I have been doing some cross-hemispheric registration for some of the subjects (not this one).

using inflated surface for initial alignment
using n_averages = 4096
l_dist = 10.000
using l_parea = 1.000
$Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $
  $Id: mrisurf.c,v 1.693.2.2 2011/04/27 19:21:05 nicks Exp $
reading surface from /Applications/freesurfer/subjects/t05/surf/lh.sphere...
reading template parameterization from /Applications/freesurfer/subjects/V1_average/label/lh.v1.invivo.tif...
mrisReadTriangleFile(/Applications/freesurfer/subjects/t05/surf/lh.smoothwm): surface doesn't match /Applications/freesurfer/subjects/t05/surf/lh.sphere

Any suggestions?

All the best,
Anders



2012/6/13 Anders Hougaard <ahougaard@dadlnet.dk>
Hi Bruce,

That actually seems to do the trick. Thank you very much!

Best,
Anders


2012/6/12 Bruce Fischl <fischl@nmr.mgh.harvard.edu>
try symlinking the ?h.white surfaces to the ?h.smoothwm and see if that solves your problem

cheers
Bruce

On Tue, 12 Jun 2012, Anders Hougaard wrote:

Dear Dr. Bock,
I get the same error in FS 5.1.0 when running  recon-all -s <subject>
-label_v1.

Did you find a solution?

Best regards,

Anders Hougaard, MD
Danish Headache Center
Dept. of Neurology
Glostrup Hospital
Copenhagen
Denmark

2011/11/11 Andrew Bock <abock@u.washington.edu>
     Hello,

     I am having a similar problem to one described on the freesurfer
     mail archive, where I receive the following error when trying to
     identify V1 using the Hinds method (i.e. recon-all -s <subject>
     -label_v1):

     processing subject V1_average...
     MRISreadVertexPosition(white): could not open file
     /usr/local/freesurfer/subjects/V1_average/surf/rh.white
     No such file or directory
     MRISreadOriginalProperties: could not read surface file white
     No such file or directory
     could not read surface positions from white
     No such file or directory


     As Prof. Krish Singh indicated in July, it appears the problem
     occurs when trying to open rh.white (or lh.white) from the surf
     subdirectory in V1_average, which doesn't exist.

     I have run recon-all -s <subject> -make all, but it returns
     "make: Nothing to be done for `all'."

     Any help you can provide would be greatly appreciated!

     Thanks in advance,

     Andrew

     --
     Andrew Bock, Ph.D.
     Department of Psychology
     University of Washington
     Seattle, WA 98195
     Tel: 206.543.3817
     Fax: 206.685.3157
     abock@u.washington.edu

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