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Hi Lauren, 

From the log it actually looks like you have never run "trac-all -c dmrirc -path", but  "trac-all -c dmrirc -prep" twice. 

Chiara


On May 24, 2023, at 11:51 AM, Lauren Stephens <laurenss@stanford.edu> wrote:

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Dear Freesurfer Experts,

We have been working to run a test data set through tracula and have seemingly had success, however when we ran trac-all -path it completed without error but the files created did not go into a dpath folder.  The files that were created went into the dmri and dlabel folders.  We are specifically looking for the dpath/merged_avg<nsubj>_<inter>_<intra>.mgz file.  

We are using Freesurfer 7.3.2 on an iMac Pro running Ventura 13.3.1 in a bash shell.  I have attached the dmrirc file.  I have also attached the trac-all.log.  

Thank you for any help you can provide.  

Lauren Stephens

Lauren Stephens, MS 
Assistant Clinical Research Coordinator 
Department of Psychiatry and Behavioral Science 
Stanford University School of Medicine  
P: (650)-725-1716

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