Ouch. Is the aseg also like that?

Cheers,

/E

-- 

Juan Eugenio Iglesias

Senior research fellow

CMIC (UCL), MGH (HMS) and CSAIL (MIT)

http://www.jeiglesias.com 

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Daniel Callow <ddcc2442@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, 8 August 2019 at 08:20
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] SegmentHA_T1.sh hippocampal sub-field issue

        External Email - Use Caution        

Hello, 

When using segmentHA_T1.sh on one of my subjects the left hippocampus ROI seems to spill over a lot into white matter and other gray matter regions. See attached picture. Is there a way to fix this or improve the hippocampal segmentation? Or will I have to scrap this subject's data? I have also included the scan log.

Best,

Daniel Callow

PhD Student, Neuroscience and Cognitive Science

Exercise for Brain Health Lab

University of Maryland, College Park

ddcc2442@gmail.com

443-254-6298