Dear FS experts,
I have a rather simple question:
I would like to obtain the MNI coordinates of the most significant vertex in a sig.mgh map but within a specific ROI (for instance the left supramarginal region).
Here is my attempt but with practical gaps in terms of command parameters:
1) mri_binarize lh aparc --min LABEL/NUMBER_OF_SUPRAMARG? --o roimask.mgh
2) fslmaths sig.mgh mult roimask.mgh -o maskedsig.mgh
3) which command could I use to obtain the MNI coordinates of the peak value in maskedsig.mgh?