56% tests passed, 57 tests failed out of 130
Total Test time (real) = 200.72 sec
The following tests FAILED:
2 - test_TriangleFile_readWrite (Failed)
4 - utils_test (Failed)
5 - voronoi_test (Failed)
6 - border_values_test (Failed)
9 - soapbubble_test (Failed)
10 - lineprof_test (Failed)
13 - mri_annotation2label_test (Failed)
15 - mri_aparc2aseg_test (Failed)
16 - mri_binarize_test (Failed)
18 - mri_ca_label_test (Failed)
20 - mri_ca_normalize_test (Failed)
22 - mri_ca_register_test (Failed)
25 - mri_concat_test (Failed)
28 - mri_convert_test (Failed)
29 - mri_coreg_test (Failed)
30 - mri_diff_test (Failed)
32 - mri_em_register_test (Failed)
36 - mri_fuse_segmentations_test (Failed)
37 - mri_fwhm_test (Failed)
39 - mri_label2label_test (Failed)
40 - mri_label2vol_test (Failed)
42 - mri_matrix_multiply_test (Failed)
43 - mri_mc_test (Failed)
47 - mri_normalize_test (Failed)
49 - mri_relabel_hypointensities_test (Failed)
53 - mri_robust_template_test (Failed)
58 - mri_segment_test (Failed)
61 - mri_surf2surf_test (Failed)
62 - mri_surf2vol_test (Failed)
63 - mri_surfcluster_test (Failed)
68 - mris_anatomical_stats_test (Failed)
70 - mris_ca_label_test (Failed)
72 - mris_convert_test (Failed)
73 - mris_convert_gifti_test (Failed)
75 - mris_curvature_test (Failed)
76 - mris_curvature_stats_test (Failed)
77 - mris_diff_test (Failed)
78 - mris_divide_parcellation_test (Failed)
81 - mris_fix_topology_test (Failed)
84 - mris_inflate_posix_test (Failed)
86 - mris_jacobian_posix_test (Failed)
87 - mris_label2annot_test (Failed)
89 - mris_make_surfaces_test (Failed)
91 - mris_register_test (Failed)
93 - mris_smooth_posix_test (Failed)
95 - mris_sphere_test (Failed)
96 - mris_sphere_posix_test (Failed)
97 - mris_surface_stats_test (Failed)
99 - mris_volmask_test (Failed)
106 - talairach_avi_test (Failed)
110 - mri_concatenate_gcam_test (Failed)
112 - mri_glmfit_test (Failed)
116 - mri_seg_diff_test (Failed)
118 - mri_segcentroids_test (Failed)
120 - mri_warp_convert_test (Failed)
123 - mris_expand_test (Failed)
127 - mris_transform_test (Failed)
Errors while running CTest
Makefile:85: recipe for target 'test' failed
make: *** [test] Error 8
I have installed the datafiles in the annex repo. Do you have any suggestions for alleviating these failures?
I must add that I, too, am performing this build from source in hopes to be able to use CUDA (I have 9.1) and my GPUs (GeForce Titan X) when running freesurfer. I understand that
CUDA is not directly supported, but do you believe that building from source is the best option to try to get Freesurfer to work with the CUDA software and GPU’s on my system?
I could not get them to work together from the prebuilt software and I have concerns about downloading CUDA 5.0 on my Ubuntu 18.04 system, since the archived CUDA 5.0 download
on NVIDIA only has options for up to Ubuntu 11.10.
If you have other suggestions besides building from source to get Freesurfer to use my GPUs for processing, I’m open to them. Otherwise, any advise you have re: my current `make
test` issues are much appreciated!
Many thanks,
Christian McDaniel
P.S. Kazuhiro, I tried your 8-step procedure above, but on step 2 I got an error building vxl that it could not find the '-lgeotiff' flag used in one of the cmake commands. I tried debugging but found no help online. Any advice?
___________________________________________
Christian McDaniel
President, Deep Learning @ UGA
Data Scientist, UGA CVIOG ITOS Data Analytics Team
Master’s Student, Institute for Artificial Intelligence
Boyd GSRC
University of Georgia
Athens, GA