You can try running samseg on it (in version 7.1.1), eg
samseg --i ct.nii.gz --o samseg
Then look at samseg/seg.mgz
I have no Idea what will happen, but samseg is pretty robust, so it might work

On 8/27/2020 4:53 AM, mudassar liaq wrote:

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Hi,
As far as I searched, Freesurfer does not segment CT Scans. Can anybody guide me to how I can segment Brain CT Scans in an automated way. (Any pointer or guiders are welcome).
I have searched but couldn't find something similar to freesurfer (MRI).

Thanks and Regards,
Liaq.
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