Give it the annotation (.annot) file

On 08/15/2013 01:26 PM, Garikoitz Lerma-Usabiaga wrote:

Thanks Doug!
Could you give me an example please?  I cannot get it to work, with this command I get a zero label...

mri_annotation2label --subject fsaverage --hemi lh --annotation lh.mc-z.abs.sig.cluster.mgh --labelbase lh.mc_mycluster

thanks again!
Gari

On Thu, Aug 15, 2013 at 4:44 PM, Douglas Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:


    Hi Gari, you can use mri_annotation2label
    doug


    On 8/14/13 3:00 PM, Garikoitz Lerma-Usabiaga wrote:

    Hi list,
    we have a cluster that survived the Monte Carlo simulation for
    thickness, and we would like to obtain more data from that exact
    cluster (volume for example), is it possible to automatically
    create a label from that cluster?

    If I use mri_binarize or mri_cor2label is not working (I
    understand that the clusters are not stored as individual
    vertexes in the .mgh file but I don't know what the format is.

    Thanks in advance!
    Gari

    PD: I am on a VPN and tksurfer is not working for manually
    creating a label with the contour of the cluster.


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