Dear experts,

 

I’m running a sensory mapping experiment, which I would like to analyse in single subject space. Everything seems to be working fine (see code excerpt below). Now I’d  like to do two additional things:

1)      show the surface results in single subject volume space (as overlay on T1).

2)      Limit my surface analysis to BA3b, using correction for multiple comparisons in that region only. I’ve read that this should be possible with monte carlo simulation, but can’t figure out how to do this for one subject only.

Any help is much appreciated!

 

Best,

Martin

 

 

mkanalysis-sess -fsd bold  -surface self lh -fwhm ${fwhm_par} -event-related  -paradigm Onsets.par -nconditions 5 -spmhrf 1 -TR 1.5 -refeventdur 12 -hpf 0.01 -nskip 3 -polyfit 2 -analysis MR.lh -force -per-run

 

mkcontrast-sess -analysis MR.lh -contrast digit1_lh -a 1 -c 0

#…

 

bbregister --s $subj --mov f.nii.gz --init-fsl --int whole.nii.gz --t2 --reg register.partial.dat

 

preproc-sess -s $subj -fsd bold -surface self lhrh -fwhm ${fwhm_par} -projfrac 0.5 -per-run -update -regfile register.partial.dat

 

selxavg3-sess -s $subj -analysis MR.lh –force

 

freeview -f ${ANAT}/${subj}/surf/lh.inflated:curvature_method=binary:overlay=${FUNC}/${subj}/bold/MR.lh/digit1_lh/sig.nii.gz