Do you mean that the inflated is not somehow in line with the pial? They are not supposed to be (and it is not clear what that would mean). The white and pial look aligned

On 7/6/20 7:16 AM, Mason Wells wrote:

        External Email - Use Caution        

Hi Experts,

 

I am using mris_convert to convert native FreeSurfer surf files (inflated, pial and white) to GIFTI files. However, when I view them in Freeview, there seems to be a misalignment/error (attached). The commands I ran followed this structure:

 

Mris_convert lh.inflated lh.inflated.surf.gii

 

Any help would be great.

Mason

 

Mason T Wells, MSc

PhD student

School of Optometry and Vision Sciences

& Cardiff University Brain Research

Imaging Centre (CUBRIC), School of Psychology

Cardiff University

Cardiff   

CF24 4HQ

UK

 

EmailWellsMT1@cardiff.ac.uk

Tel02920 879628

WebCardiff University webpage

Mason T Wells, MSc

Myfyriwr PhD

Yr Ysgol Optometreg a Gwyddorau’r Golwg

& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol Seicoleg

Prifysgol Caerdydd

Heol Maindy

Caerdydd   

CF24 4HQ 

DU

 

E-bostWellsMT1@caerdydd.ac.uk

Ffôn02920 879628

 


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