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Thanks Doug, 

I followed your tips and try to run mris_remove_intersection. However  the result looks like the same than before. Maybe I am doing something wrong. Could you please provide me more details? 

Do you have any other suggestions?

Thanks again for your help

Dave

Il giorno sab 11 gen 2020 alle ore 15:56 Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> ha scritto:

YOu can try running mris_remove_intersection (or something like that)

On 1/11/2020 12:48 PM, Davide Momi wrote:

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Dear Freesurfer expert, 

I am working with bem model and I have created the outer and the inner skull. Unfortunately, for few subjects the two surfaces intersect each other (see attached). I've tried to edit it manually but I had hard time in figuring it out. Could you please help me with this?

thanks 

Dave 

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