Hi Yuhong,
What happens when you run 3dvolreg.afni from the command line without
any args?
doug
> _______________________________________________
On 03/21/2013 12:38 PM, Y.V. Jiang wrote:
> Hi Doug,
>
> I was running preproc-sess in the newly released freesurfer-5.2.0. The
> command I used was:
>
> preproc-sess -sf sessid -df sessdir -fsd bold -surface fsaverage lhr
> -mni305 -fwhm 6 -per-run
>
> The program failed with the following errors:
>
> 3dvolreg.afni -verbose -dfile 004/fmcpr.mcdat -1Dmatrix_save
> 004/fmcpr.mat -base 004/tmp.mc-afni2.29239/tempvol.nii.gz -prefix
> 004/tmp.mc-afni2.29239/outvol.nii.gz 004/tmp.mc-afni2.29239/invol.nii.gz
> 3dvolreg.afni: symbol lookup error: 3dvolreg.afni: undefined symbol:
> afni_ncerr
> ERROR: 3dvolreg.afni
> Invalid null command.
>
> I have the file 3dvolreg.afni in $FREESURFER_HOME/bin. There is
> another file of the same name under afni/bin. Preproc-sess is relying
> on the version in $FREESURFER_HOME/bin.
>
> Do you know what the problem is? Should I replace freesurfer's copy of
> 3dvolreg.afni with AFNI's copy of 3dvolreg.afni?
>
> Thanks.
>
> -Yuhong
>
>
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.