Thanks,

it seems to work well.

is there a way to have the good labels when looking on freeview the output volume.

because with the freesurferColorLut it's not the good labels.

or at least having the correspondence between values and labels on a .txt file or whatever ?

Regards,

Pierre

On Thu, Apr 20, 2017 at 5:04 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

Hi Pierre

use, you can try mri_aparc2aseg.

cheers
Bruce
On Thu, 20 Apr 2017, pierre deman-kibleur
wrote:

>
> Hi,
>
> Is there a way to have the destrieux parcellation on a volume format ? .nii
> for example.
> I tried to used mri_surf2vol without success for now:
>
> mri_surf2vol --subject 0001GRE_25-11-2014 --merge
> /home/b67-belledone/freesurfer/subjects/0001GRE_25-11-2014/mri/T1.mgz --so
> /home/b67-belledone/freesurfer/subjects/0001GRE_25-11-2014/surf/lh.orig/home/b67-belledone/freesurfer/subjects/0001GRE_25-11-2014/label/lh.aparc.a
> 2009s.annot --o /tmp/test.nii
>
> Regards,
> Pierre
>
> --
> DEMAN Pierre
> Mobile : +33 7 82 57 80 94
>
>

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