Constructing image-to-world transform from header information (5771302/5771302_y0_t1_n3_lesion_mask_leap-filled.nii.gz) Read image: 5771302/5771302_y0_t1_n3_lesion_mask_leap-filled.nii.gz Constructing image-to-world transform from header information (/opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/template.nii) Read image: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/template.nii Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlasForAffineRegistration.txt.gz Transforming points Transforming points AFFINE min: 0 max: 8376.42 robustMin: 0 robustMax: 6426.32 histogram[ 0 ]: 56872 histogram[ 1 ]: 42492 histogram[ 2 ]: 20942 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.130332 cumulativeHistogram[ 1 ]: 0.227709 cumulativeHistogram[ 2 ]: 0.275701 cumulativeHistogram[ 3997 ]: 0.999998 cumulativeHistogram[ 3998 ]: 0.999998 cumulativeHistogram[ 3999 ]: 1 AFFINE min: 0 max: 8376.42 robustMin: 0 robustMax: 6426.32 histogram[ 0 ]: 56872 histogram[ 1 ]: 42492 histogram[ 2 ]: 20942 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.130332 cumulativeHistogram[ 1 ]: 0.227709 cumulativeHistogram[ 2 ]: 0.275701 cumulativeHistogram[ 3997 ]: 0.999998 cumulativeHistogram[ 3998 ]: 0.999998 cumulativeHistogram[ 3999 ]: 1 Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlasForAffineRegistration.txt.gz Transforming points Transforming points AFFINE L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.005 MaximalDeformationStopCriterion: 0.005 Verbose: 0 min: 0 max: 8376.42 robustMin: 0 robustMax: 6426.32 histogram[ 0 ]: 56872 histogram[ 1 ]: 42492 histogram[ 2 ]: 20942 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.130332 cumulativeHistogram[ 1 ]: 0.227709 cumulativeHistogram[ 2 ]: 0.275701 cumulativeHistogram[ 3997 ]: 0.999998 cumulativeHistogram[ 3998 ]: 0.999998 cumulativeHistogram[ 3999 ]: 1 Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlasForAffineRegistration.txt.gz Transforming points Transforming points AFFINE L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.005 MaximalDeformationStopCriterion: 0.005 Verbose: 0 min: 0 max: 8376.42 robustMin: 0 robustMax: 6426.32 histogram[ 0 ]: 56872 histogram[ 1 ]: 42492 histogram[ 2 ]: 20942 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.130332 cumulativeHistogram[ 1 ]: 0.227709 cumulativeHistogram[ 2 ]: 0.275701 cumulativeHistogram[ 3997 ]: 0.999998 cumulativeHistogram[ 3998 ]: 0.999998 cumulativeHistogram[ 3999 ]: 1 Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlasForAffineRegistration.txt.gz Transforming points Transforming points AFFINE L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.005 MaximalDeformationStopCriterion: 0.005 Verbose: 0 min: 0 max: 8376.42 robustMin: 0 robustMax: 6426.32 histogram[ 0 ]: 56872 histogram[ 1 ]: 42492 histogram[ 2 ]: 20942 histogram[ 3997 ]: 0 histogram[ 3998 ]: 0 histogram[ 3999 ]: 1 cumulativeHistogram[ 0 ]: 0.130332 cumulativeHistogram[ 1 ]: 0.227709 cumulativeHistogram[ 2 ]: 0.275701 cumulativeHistogram[ 3997 ]: 0.999998 cumulativeHistogram[ 3998 ]: 0.999998 cumulativeHistogram[ 3999 ]: 1 Constructing image-to-world transform from header information (5771302/5771302_y0_t1_n3_lesion_mask_leap-filled.nii.gz) Read image: 5771302/5771302_y0_t1_n3_lesion_mask_leap-filled.nii.gz Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz Transforming points Transforming points ##---------------------------------------------- Samsegment Options ##---------------------------------------------- output directory: ../results_samseg/5771302_y0 input images: 5771302/5771302_y0_t1_n3_lesion_mask_leap-filled.nii.gz modelSpecifications: {'FreeSurferLabels': [0, 165, 258, 16, 24, 8, 47, 15, 259, 3, 42, 7, 46, 41, 2, 63, 54, 18, 53, 44, 17, 31, 5, 85, 60, 28, 14, 26, 12, 51, 62, 58, 77, 4, 30, 43, 52, 11, 49, 13, 50, 10, 80, 72], 'atlasFileName': '/opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz', 'names': ['Unknown', 'Skull', 'Soft_Nonbrain_Tissue', 'Brain-Stem', 'CSF', 'Left-Cerebellum-Cortex', 'Right-Cerebellum-Cortex', '4th-Ventricle', 'Fluid_Inside_Eyes', 'Left-Cerebral-Cortex', 'Right-Cerebral-Cortex', 'Left-Cerebellum-White-Matter', 'Right-Cerebellum-White-Matter', 'Right-Cerebral-White-Matter', 'Left-Cerebral-White-Matter', 'Right-choroid-plexus', 'Right-Amygdala', 'Left-Amygdala', 'Right-Hippocampus', 'Right-Inf-Lat-Vent', 'Left-Hippocampus', 'Left-choroid-plexus', 'Left-Inf-Lat-Vent', 'Optic-Chiasm', 'Right-VentralDC', 'Left-VentralDC', '3rd-Ventricle', 'Left-Accumbens-area', 'Left-Putamen', 'Right-Putamen', 'Right-vessel', 'Right-Accumbens-area', 'WM-hypointensities', 'Left-Lateral-Ventricle', 'Left-vessel', 'Right-Lateral-Ventricle', 'Right-Pallidum', 'Left-Caudate', 'Right-Thalamus', 'Left-Pallidum', 'Right-Caudate', 'Left-Thalamus', 'non-WM-hypointensities', '5th-Ventricle'], 'colors': [[0, 0, 0, 0], [255, 165, 0, 255], [128, 128, 128, 255], [119, 159, 176, 255], [60, 60, 60, 255], [230, 148, 34, 255], [230, 148, 34, 255], [42, 204, 164, 255], [128, 0, 128, 255], [205, 62, 78, 255], [205, 62, 78, 255], [220, 248, 164, 255], [220, 248, 164, 255], [0, 225, 0, 255], [245, 245, 245, 255], [0, 200, 221, 255], [103, 255, 255, 255], [103, 255, 255, 255], [220, 216, 20, 255], [196, 58, 250, 255], [220, 216, 20, 255], [0, 200, 200, 255], [196, 58, 250, 255], [234, 169, 30, 255], [165, 42, 42, 255], [165, 42, 42, 255], [204, 182, 142, 255], [255, 165, 0, 255], [236, 13, 176, 255], [236, 13, 176, 255], [160, 32, 240, 255], [255, 165, 0, 255], [200, 70, 255, 255], [120, 18, 134, 255], [160, 32, 240, 255], [120, 18, 134, 255], [13, 48, 255, 255], [122, 186, 220, 255], [0, 118, 14, 255], [12, 48, 255, 255], [122, 186, 220, 255], [0, 118, 14, 255], [164, 108, 226, 255], [120, 190, 150, 255]], 'sharedGMMParameters': [GMMparameter(mergedName='Unknown', numberOfComponents=1, searchStrings=['Unknown', 'Skull']), GMMparameter(mergedName='GlobalWM', numberOfComponents=1, searchStrings=['White', 'Brain-Stem', 'VentralDC', 'Optic-Chiasm', 'Thalamus', 'Pallidum']), GMMparameter(mergedName='GlobalGM', numberOfComponents=1, searchStrings=['Cortex', 'Caudate', 'Hippocampus', 'Amygdala', 'Accumbens', 'hypointensities', 'Thalamus']), GMMparameter(mergedName='GlobalCSF_messy', numberOfComponents=1, searchStrings=['CSF', 'vessel', 'choroid-plexus', 'Fluid']), GMMparameter(mergedName='GlobalCSF_clean', numberOfComponents=1, searchStrings=['Ventricle', 'Inf-Lat-Vent', 'Fluid']), GMMparameter(mergedName='Putamen', numberOfComponents=1, searchStrings=['Putamen']), GMMparameter(mergedName='Soft', numberOfComponents=3, searchStrings=['Soft'])], 'useDiagonalCovarianceMatrices': True, 'maskingProbabilityThreshold': 0.5, 'maskingDistance': 10.0, 'K': 0.1, 'biasFieldSmoothingKernelSize': 50, 'whiteMatterAndCortexSmoothingSigma': 0} optimizationOptions: {'maximumNumberOfDeformationIterations': 20, 'absoluteCostPerVoxelDecreaseStopCriterion': 0.0001, 'verbose': False, 'maximalDeformationStopCriterion': 0.001, 'lineSearchMaximalDeformationIntervalStopCriterion': 0.001, 'maximalDeformationAppliedStopCriterion': 0.0, 'BFGSMaximumMemoryLength': 12, 'multiResolutionSpecification': [{'atlasFileName': '/opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level1.txt.gz', 'targetDownsampledVoxelSpacing': 2.0, 'maximumNumberOfIterations': 100, 'estimateBiasField': True}, {'atlasFileName': '/opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz', 'targetDownsampledVoxelSpacing': 1.0, 'maximumNumberOfIterations': 100, 'estimateBiasField': True}]} performing affine atlas registration image: 5771302/5771302_y0_t1_n3_lesion_mask_leap-filled.nii.gz template: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/template.nii maximalDeformation=1.0000 minLogLikelihood=-0.8030 maximalDeformation=3.7568 minLogLikelihood=-0.8642 maximalDeformation=1.5858 minLogLikelihood=-0.8817 maximalDeformation=1.5060 minLogLikelihood=-0.8914 maximalDeformation=1.5662 minLogLikelihood=-0.8973 maximalDeformation=1.0809 minLogLikelihood=-0.8998 maximalDeformation=0.5251 minLogLikelihood=-0.9003 maximalDeformation=1.1989 minLogLikelihood=-0.9010 maximalDeformation=0.0000 minLogLikelihood=-0.9010 appliedScaling: 1.0093 maximalDeformation=1.0000 minLogLikelihood=-0.9135 maximalDeformation=0.0420 minLogLikelihood=-0.9135 maximalDeformation=0.0000 minLogLikelihood=-0.9135 appliedScaling: 1.0027 maximalDeformation=1.0000 minLogLikelihood=-0.9156 maximalDeformation=0.0000 minLogLikelihood=-0.9156 appliedScaling: 1.0014 writing template transform to ../results_samseg/5771302_y0/template.lta writing talairach transform to ../results_samseg/5771302_y0/samseg.talairach.lta atlas registration complete: 0:00:33.477742 [1. 0.9375 0.9375] Unknown Unknown (100%) Skull (100%) GlobalWM Brain-Stem (100%) Left-Cerebellum-White-Matter (100%) Right-Cerebellum-White-Matter (100%) Right-Cerebral-White-Matter (100%) Left-Cerebral-White-Matter (100%) Optic-Chiasm (100%) Right-VentralDC (100%) Left-VentralDC (100%) Right-Pallidum (100%) Right-Thalamus (50%) Left-Pallidum (100%) Left-Thalamus (50%) GlobalGM Left-Cerebellum-Cortex (100%) Right-Cerebellum-Cortex (100%) Left-Cerebral-Cortex (100%) Right-Cerebral-Cortex (100%) Right-Amygdala (100%) Left-Amygdala (100%) Right-Hippocampus (100%) Left-Hippocampus (100%) Left-Accumbens-area (100%) Right-Accumbens-area (100%) WM-hypointensities (100%) Left-Caudate (100%) Right-Thalamus (50%) Right-Caudate (100%) Left-Thalamus (50%) non-WM-hypointensities (100%) GlobalCSF_messy CSF (100%) Fluid_Inside_Eyes (50%) Right-choroid-plexus (100%) Left-choroid-plexus (100%) Right-vessel (100%) Left-vessel (100%) GlobalCSF_clean 4th-Ventricle (100%) Fluid_Inside_Eyes (50%) Right-Inf-Lat-Vent (100%) Left-Inf-Lat-Vent (100%) 3rd-Ventricle (100%) Left-Lateral-Ventricle (100%) Right-Lateral-Ventricle (100%) 5th-Ventricle (100%) Putamen Left-Putamen (100%) Right-Putamen (100%) Soft Soft_Nonbrain_Tissue (100%) ==================== Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level1.txt.gz Transforming points Transforming points 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 { depth: 1 maximumNumberOfDeformationIterations: 20 absoluteCostPerVoxelDecreaseStopCriterion: 0.0001 verbose: False maximalDeformationStopCriterion: 0.001 lineSearchMaximalDeformationIntervalStopCriterion: 0.001 maximalDeformationAppliedStopCriterion: 0.0 BFGSMaximumMemoryLength: 12 multiResolutionSpecification: { depth: 2 atlasFileName: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level1.txt.gz targetDownsampledVoxelSpacing: 2.0 maximumNumberOfIterations: 100 estimateBiasField: True }, { depth: 2 atlasFileName: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz targetDownsampledVoxelSpacing: 1.0 maximumNumberOfIterations: 100 estimateBiasField: True } } ==================== iterationNumber: 0 EM converged! maximalDeformation=0.5000 minLogLikelihood=578804.9274 Total time spent: 0.5857 sec maximalDeformation=0.8372 minLogLikelihood=571128.9799 Total time spent: 0.2247 sec maximalDeformation=1.0557 minLogLikelihood=568114.7821 Total time spent: 0.2492 sec maximalDeformation=0.3420 minLogLikelihood=566545.1154 Total time spent: 0.2708 sec maximalDeformation=0.0992 minLogLikelihood=565921.8787 Total time spent: 0.3157 sec maximalDeformation=0.2910 minLogLikelihood=564288.3024 Total time spent: 0.4557 sec maximalDeformation=0.6486 minLogLikelihood=563133.7454 Total time spent: 0.2827 sec maximalDeformation=0.1960 minLogLikelihood=562113.1345 Total time spent: 0.2745 sec maximalDeformation=0.5927 minLogLikelihood=560649.0479 Total time spent: 0.6961 sec maximalDeformation=0.2180 minLogLikelihood=560147.1084 Total time spent: 0.3217 sec maximalDeformation=0.2560 minLogLikelihood=559803.3713 Total time spent: 0.2988 sec maximalDeformation=0.1596 minLogLikelihood=559582.7205 Total time spent: 0.5030 sec maximalDeformation=0.3026 minLogLikelihood=559333.0781 Total time spent: 0.4617 sec maximalDeformation=0.0994 minLogLikelihood=559128.7954 Total time spent: 0.2522 sec maximalDeformation=0.1159 minLogLikelihood=558946.7380 Total time spent: 0.5088 sec maximalDeformation=0.2795 minLogLikelihood=558650.9437 Total time spent: 0.3222 sec maximalDeformation=0.1118 minLogLikelihood=558574.6105 Total time spent: 0.4661 sec maximalDeformation=0.2763 minLogLikelihood=558261.3612 Total time spent: 0.3356 sec maximalDeformation=0.2574 minLogLikelihood=557872.1757 Total time spent: 0.5543 sec maximalDeformation=0.4152 minLogLikelihood=557015.4065 Total time spent: 0.2672 sec maximalDeformation=0.0000 minLogLikelihood=557015.4065 Total time spent: 0.0000 sec maximalDeformationApplied: 2.2687 ======================================================= iterationNumber: 1 EM converged! maximalDeformation=0.3378 minLogLikelihood=543114.7833 Total time spent: 0.7248 sec maximalDeformation=0.0227 minLogLikelihood=543075.0772 Total time spent: 0.3981 sec maximalDeformation=0.2169 minLogLikelihood=542667.2158 Total time spent: 0.2080 sec maximalDeformation=0.6491 minLogLikelihood=541561.9421 Total time spent: 0.2178 sec maximalDeformation=0.2370 minLogLikelihood=541173.0666 Total time spent: 0.4411 sec maximalDeformation=0.0951 minLogLikelihood=541010.6172 Total time spent: 0.6366 sec maximalDeformation=0.3515 minLogLikelihood=540474.5426 Total time spent: 0.6651 sec maximalDeformation=0.1750 minLogLikelihood=540272.0083 Total time spent: 0.5262 sec maximalDeformation=0.0638 minLogLikelihood=540199.9277 Total time spent: 0.2945 sec maximalDeformation=0.0388 minLogLikelihood=540144.5711 Total time spent: 0.4912 sec maximalDeformation=0.2747 minLogLikelihood=539949.7336 Total time spent: 0.2361 sec maximalDeformation=0.0710 minLogLikelihood=539830.6968 Total time spent: 0.2420 sec maximalDeformation=0.1215 minLogLikelihood=539557.0241 Total time spent: 0.4631 sec maximalDeformation=0.1732 minLogLikelihood=539267.5388 Total time spent: 0.4441 sec maximalDeformation=0.1054 minLogLikelihood=539130.6014 Total time spent: 0.3026 sec maximalDeformation=0.5017 minLogLikelihood=538997.5323 Total time spent: 0.2378 sec maximalDeformation=0.1422 minLogLikelihood=538981.8186 Total time spent: 0.4145 sec maximalDeformation=0.2738 minLogLikelihood=538832.9956 Total time spent: 0.2354 sec maximalDeformation=0.2094 minLogLikelihood=538738.0937 Total time spent: 0.2361 sec maximalDeformation=0.2668 minLogLikelihood=538531.9672 Total time spent: 0.3591 sec maximalDeformation=0.0000 minLogLikelihood=538531.9672 Total time spent: 0.0000 sec maximalDeformationApplied: 1.2998 ======================================================= iterationNumber: 2 EM converged! maximalDeformation=0.6544 minLogLikelihood=538019.4633 Total time spent: 0.7520 sec maximalDeformation=0.1733 minLogLikelihood=537779.7321 Total time spent: 0.2194 sec maximalDeformation=0.2589 minLogLikelihood=537463.5767 Total time spent: 0.4449 sec maximalDeformation=0.2410 minLogLikelihood=537259.0767 Total time spent: 0.2650 sec maximalDeformation=0.0440 minLogLikelihood=537225.8838 Total time spent: 0.3633 sec maximalDeformation=0.3411 minLogLikelihood=537167.8699 Total time spent: 0.2381 sec maximalDeformation=0.0778 minLogLikelihood=537124.1975 Total time spent: 0.4388 sec maximalDeformation=0.0990 minLogLikelihood=537067.1670 Total time spent: 0.5269 sec maximalDeformation=0.0275 minLogLikelihood=537057.6107 Total time spent: 0.7825 sec maximalDeformation=0.1260 minLogLikelihood=537016.5634 Total time spent: 0.2396 sec maximalDeformation=0.2398 minLogLikelihood=536962.0081 Total time spent: 0.2442 sec maximalDeformation=0.2330 minLogLikelihood=536901.5292 Total time spent: 0.5454 sec maximalDeformation=0.0747 minLogLikelihood=536863.9124 Total time spent: 0.3591 sec maximalDeformation=0.3507 minLogLikelihood=536616.8867 Total time spent: 0.2491 sec maximalDeformation=0.0853 minLogLikelihood=536553.4319 Total time spent: 0.2473 sec maximalDeformation=0.3695 minLogLikelihood=536308.6311 Total time spent: 0.2632 sec maximalDeformation=0.1485 minLogLikelihood=536146.8161 Total time spent: 0.4834 sec maximalDeformation=0.0722 minLogLikelihood=536055.9896 Total time spent: 0.3715 sec maximalDeformation=0.1375 minLogLikelihood=535834.7530 Total time spent: 0.3003 sec maximalDeformation=0.2265 minLogLikelihood=535664.4271 Total time spent: 0.3964 sec maximalDeformation=0.0000 minLogLikelihood=535664.4271 Total time spent: 0.0000 sec maximalDeformationApplied: 1.1421 ======================================================= iterationNumber: 3 EM converged! maximalDeformation=0.2500 minLogLikelihood=535494.5156 Total time spent: 0.6246 sec maximalDeformation=0.0656 minLogLikelihood=535468.1589 Total time spent: 0.2064 sec maximalDeformation=0.0597 minLogLikelihood=535419.7789 Total time spent: 0.4106 sec maximalDeformation=0.4898 minLogLikelihood=535104.0565 Total time spent: 0.2173 sec maximalDeformation=0.2605 minLogLikelihood=534901.0473 Total time spent: 0.2171 sec maximalDeformation=0.0539 minLogLikelihood=534863.8044 Total time spent: 0.7329 sec maximalDeformation=0.1586 minLogLikelihood=534791.4259 Total time spent: 0.3567 sec maximalDeformation=0.0854 minLogLikelihood=534757.8915 Total time spent: 0.5704 sec maximalDeformation=0.1404 minLogLikelihood=534714.4166 Total time spent: 0.4110 sec maximalDeformation=0.0613 minLogLikelihood=534687.3012 Total time spent: 0.5390 sec maximalDeformation=0.0317 minLogLikelihood=534677.0870 Total time spent: 0.2283 sec maximalDeformation=0.0500 minLogLikelihood=534658.0194 Total time spent: 0.2317 sec maximalDeformation=0.1580 minLogLikelihood=534591.2214 Total time spent: 0.2346 sec maximalDeformation=0.2626 minLogLikelihood=534499.7909 Total time spent: 0.2348 sec maximalDeformation=0.2292 minLogLikelihood=534416.9010 Total time spent: 0.2844 sec maximalDeformation=0.2347 minLogLikelihood=534347.7089 Total time spent: 0.2366 sec 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 maximalDeformation=0.0562 minLogLikelihood=534315.2495 Total time spent: 0.2342 sec maximalDeformation=0.1737 minLogLikelihood=534194.0260 Total time spent: 0.4310 sec maximalDeformation=0.0818 minLogLikelihood=534136.6913 Total time spent: 0.4024 sec maximalDeformation=0.0601 minLogLikelihood=534083.3113 Total time spent: 0.4537 sec maximalDeformation=0.0000 minLogLikelihood=534083.3113 Total time spent: 0.0000 sec maximalDeformationApplied: 0.9957 ======================================================= iterationNumber: 4 EM converged! maximalDeformation=0.1250 minLogLikelihood=533997.7182 Total time spent: 0.8593 sec maximalDeformation=0.1509 minLogLikelihood=533949.4742 Total time spent: 0.2151 sec maximalDeformation=0.2121 minLogLikelihood=533912.9560 Total time spent: 0.2188 sec maximalDeformation=0.1781 minLogLikelihood=533824.9385 Total time spent: 0.2216 sec maximalDeformation=0.0827 minLogLikelihood=533775.2714 Total time spent: 0.5153 sec maximalDeformation=0.0443 minLogLikelihood=533734.6446 Total time spent: 0.6701 sec maximalDeformation=0.1458 minLogLikelihood=533668.8108 Total time spent: 0.5421 sec maximalDeformation=0.2882 minLogLikelihood=533636.8468 Total time spent: 0.2875 sec maximalDeformation=0.0832 minLogLikelihood=533613.9461 Total time spent: 0.4390 sec maximalDeformation=0.0875 minLogLikelihood=533595.5361 Total time spent: 0.2399 sec maximalDeformation=0.1197 minLogLikelihood=533550.0773 Total time spent: 0.4131 sec maximalDeformation=0.1147 minLogLikelihood=533493.8693 Total time spent: 0.5980 sec maximalDeformation=0.0760 minLogLikelihood=533437.9868 Total time spent: 0.4006 sec maximalDeformation=0.1827 minLogLikelihood=533353.6879 Total time spent: 0.4671 sec maximalDeformation=0.0670 minLogLikelihood=533340.9206 Total time spent: 0.2495 sec maximalDeformation=0.2285 minLogLikelihood=533327.7676 Total time spent: 0.2528 sec maximalDeformation=0.1625 minLogLikelihood=533273.5653 Total time spent: 0.2473 sec maximalDeformation=0.0600 minLogLikelihood=533241.6394 Total time spent: 0.2493 sec maximalDeformation=0.1633 minLogLikelihood=533131.1736 Total time spent: 0.4002 sec maximalDeformation=0.1048 minLogLikelihood=533077.0964 Total time spent: 0.4468 sec maximalDeformation=0.0000 minLogLikelihood=533077.0964 Total time spent: 0.0000 sec maximalDeformationApplied: 0.8423 ======================================================= iterationNumber: 5 EM converged! maximalDeformation=0.1250 minLogLikelihood=532966.4699 Total time spent: 0.7098 sec maximalDeformation=0.1872 minLogLikelihood=532880.2617 Total time spent: 0.2236 sec maximalDeformation=0.0822 minLogLikelihood=532837.1545 Total time spent: 0.4749 sec maximalDeformation=0.1697 minLogLikelihood=532751.8099 Total time spent: 0.2199 sec maximalDeformation=0.1805 minLogLikelihood=532737.1896 Total time spent: 0.2227 sec maximalDeformation=0.1394 minLogLikelihood=532701.3971 Total time spent: 0.2280 sec maximalDeformation=0.0288 minLogLikelihood=532684.3131 Total time spent: 0.2308 sec maximalDeformation=0.1981 minLogLikelihood=532623.2217 Total time spent: 0.2323 sec maximalDeformation=0.0522 minLogLikelihood=532612.1697 Total time spent: 0.5715 sec maximalDeformation=0.0136 minLogLikelihood=532605.2312 Total time spent: 0.2405 sec maximalDeformation=0.1961 minLogLikelihood=532569.3311 Total time spent: 0.2472 sec maximalDeformation=0.0729 minLogLikelihood=532552.4925 Total time spent: 0.3027 sec maximalDeformation=0.0575 minLogLikelihood=532532.0982 Total time spent: 0.2548 sec maximalDeformation=0.1072 minLogLikelihood=532487.3651 Total time spent: 0.4497 sec maximalDeformation=0.1467 minLogLikelihood=532433.3293 Total time spent: 0.2491 sec maximalDeformation=0.1701 minLogLikelihood=532389.5130 Total time spent: 0.2522 sec maximalDeformation=0.1140 minLogLikelihood=532337.2632 Total time spent: 0.2457 sec maximalDeformation=0.1101 minLogLikelihood=532279.6511 Total time spent: 0.8171 sec maximalDeformation=0.0884 minLogLikelihood=532247.0818 Total time spent: 0.4144 sec maximalDeformation=0.1042 minLogLikelihood=532214.1043 Total time spent: 0.2516 sec maximalDeformation=0.0000 minLogLikelihood=532214.1043 Total time spent: 0.0000 sec maximalDeformationApplied: 0.8099 ======================================================= iterationNumber: 6 EM converged! maximalDeformation=0.2500 minLogLikelihood=532102.9671 Total time spent: 0.5994 sec maximalDeformation=0.2371 minLogLikelihood=532077.5898 Total time spent: 0.2066 sec maximalDeformation=0.0926 minLogLikelihood=532042.6476 Total time spent: 0.2120 sec maximalDeformation=0.1954 minLogLikelihood=531987.6272 Total time spent: 0.2279 sec maximalDeformation=0.0530 minLogLikelihood=531967.1232 Total time spent: 0.2848 sec maximalDeformation=0.1813 minLogLikelihood=531928.6209 Total time spent: 0.2287 sec maximalDeformation=0.0276 minLogLikelihood=531923.7096 Total time spent: 0.5053 sec maximalDeformation=0.0987 minLogLikelihood=531908.3923 Total time spent: 0.2296 sec maximalDeformation=0.0896 minLogLikelihood=531886.8984 Total time spent: 0.2335 sec maximalDeformation=0.2093 minLogLikelihood=531844.2249 Total time spent: 0.4308 sec maximalDeformation=0.0553 minLogLikelihood=531821.3901 Total time spent: 0.4797 sec maximalDeformation=0.1457 minLogLikelihood=531782.9840 Total time spent: 0.2404 sec maximalDeformation=0.1088 minLogLikelihood=531747.1621 Total time spent: 0.3824 sec maximalDeformation=0.1255 minLogLikelihood=531707.6280 Total time spent: 0.4380 sec maximalDeformation=0.0577 minLogLikelihood=531682.2129 Total time spent: 0.3901 sec maximalDeformation=0.0887 minLogLikelihood=531659.1231 Total time spent: 0.2811 sec maximalDeformation=0.0831 minLogLikelihood=531625.1017 Total time spent: 0.2537 sec maximalDeformation=0.1014 minLogLikelihood=531586.6458 Total time spent: 0.2508 sec maximalDeformation=0.1400 minLogLikelihood=531567.5099 Total time spent: 0.4622 sec maximalDeformation=0.0948 minLogLikelihood=531502.2877 Total time spent: 0.2469 sec maximalDeformation=0.0000 minLogLikelihood=531502.2877 Total time spent: 0.0000 sec maximalDeformationApplied: 0.7817 ======================================================= iterationNumber: 7 EM converged! maximalDeformation=0.2500 minLogLikelihood=531396.2326 Total time spent: 0.5891 sec maximalDeformation=0.0808 minLogLikelihood=531367.8240 Total time spent: 0.4571 sec maximalDeformation=0.1675 minLogLikelihood=531318.8158 Total time spent: 0.2182 sec maximalDeformation=0.1747 minLogLikelihood=531311.4569 Total time spent: 0.2187 sec maximalDeformation=0.0941 minLogLikelihood=531298.2404 Total time spent: 0.2219 sec maximalDeformation=0.0209 minLogLikelihood=531292.3223 Total time spent: 0.2247 sec maximalDeformation=0.1090 minLogLikelihood=531264.5129 Total time spent: 0.2289 sec maximalDeformation=0.0735 minLogLikelihood=531235.0190 Total time spent: 0.2320 sec maximalDeformation=0.0999 minLogLikelihood=531199.8935 Total time spent: 0.2346 sec maximalDeformation=0.0734 minLogLikelihood=531175.3473 Total time spent: 0.2896 sec maximalDeformation=0.0651 minLogLikelihood=531138.8188 Total time spent: 0.2485 sec maximalDeformation=0.1196 minLogLikelihood=531131.3379 Total time spent: 0.4674 sec maximalDeformation=0.0256 minLogLikelihood=531121.7228 Total time spent: 0.2498 sec maximalDeformation=0.1090 minLogLikelihood=531082.1300 Total time spent: 0.2495 sec maximalDeformation=0.1216 minLogLikelihood=531032.7359 Total time spent: 0.2477 sec maximalDeformation=0.2096 minLogLikelihood=530966.8092 Total time spent: 0.2515 sec maximalDeformation=0.0619 minLogLikelihood=530945.0394 Total time spent: 0.4149 sec maximalDeformation=0.1092 minLogLikelihood=530905.5022 Total time spent: 0.2483 sec maximalDeformation=0.1267 minLogLikelihood=530854.3007 Total time spent: 0.2474 sec maximalDeformation=0.4109 minLogLikelihood=530836.5823 Total time spent: 0.2453 sec maximalDeformation=0.0000 minLogLikelihood=530836.5823 Total time spent: 0.0000 sec maximalDeformationApplied: 0.7810 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 ======================================================= iterationNumber: 8 EM converged! maximalDeformation=0.2500 minLogLikelihood=530737.7997 Total time spent: 0.6012 sec maximalDeformation=0.0649 minLogLikelihood=530722.3185 Total time spent: 0.4318 sec maximalDeformation=0.0158 minLogLikelihood=530720.5516 Total time spent: 0.4780 sec maximalDeformation=0.0389 minLogLikelihood=530712.3238 Total time spent: 0.2258 sec maximalDeformation=0.1191 minLogLikelihood=530700.7967 Total time spent: 0.2283 sec maximalDeformation=0.0345 minLogLikelihood=530695.1241 Total time spent: 0.2337 sec maximalDeformation=0.0174 minLogLikelihood=530692.6227 Total time spent: 0.2302 sec maximalDeformation=0.0858 minLogLikelihood=530664.2313 Total time spent: 0.2355 sec maximalDeformation=0.0562 minLogLikelihood=530643.8949 Total time spent: 0.3178 sec maximalDeformation=0.0837 minLogLikelihood=530625.4542 Total time spent: 0.2436 sec maximalDeformation=0.0415 minLogLikelihood=530619.0256 Total time spent: 0.2641 sec maximalDeformation=0.0664 minLogLikelihood=530601.8245 Total time spent: 0.2440 sec maximalDeformation=0.0780 minLogLikelihood=530596.4034 Total time spent: 0.4159 sec maximalDeformation=0.0397 minLogLikelihood=530588.2929 Total time spent: 0.2446 sec maximalDeformation=0.0588 minLogLikelihood=530579.8157 Total time spent: 0.2504 sec maximalDeformation=0.0659 minLogLikelihood=530567.1103 Total time spent: 0.2440 sec maximalDeformation=0.1528 minLogLikelihood=530550.6773 Total time spent: 0.2480 sec maximalDeformation=0.0790 minLogLikelihood=530536.5825 Total time spent: 0.2471 sec maximalDeformation=0.1057 minLogLikelihood=530521.2219 Total time spent: 0.4436 sec maximalDeformation=0.0924 minLogLikelihood=530511.6394 Total time spent: 0.2400 sec maximalDeformation=0.0000 minLogLikelihood=530511.6394 Total time spent: 0.0000 sec maximalDeformationApplied: 0.3324 ======================================================= iterationNumber: 9 EM converged! maximalDeformation=0.2500 minLogLikelihood=530492.7169 Total time spent: 0.6356 sec maximalDeformation=0.1488 minLogLikelihood=530482.8803 Total time spent: 0.2181 sec maximalDeformation=0.0316 minLogLikelihood=530478.2711 Total time spent: 0.2173 sec maximalDeformation=0.0742 minLogLikelihood=530470.4399 Total time spent: 0.4217 sec maximalDeformation=0.0252 minLogLikelihood=530468.9262 Total time spent: 0.4468 sec maximalDeformation=0.0690 minLogLikelihood=530463.6750 Total time spent: 0.2392 sec maximalDeformation=0.0606 minLogLikelihood=530459.6783 Total time spent: 0.2305 sec maximalDeformation=0.0274 minLogLikelihood=530455.8863 Total time spent: 0.2368 sec maximalDeformation=0.0367 minLogLikelihood=530447.5211 Total time spent: 0.2401 sec maximalDeformation=0.0655 minLogLikelihood=530437.8469 Total time spent: 0.2376 sec maximalDeformation=0.0568 minLogLikelihood=530429.9011 Total time spent: 0.2506 sec maximalDeformation=0.0379 minLogLikelihood=530419.8728 Total time spent: 0.2436 sec maximalDeformation=0.0521 minLogLikelihood=530408.0295 Total time spent: 0.2529 sec maximalDeformation=0.0783 minLogLikelihood=530396.8185 Total time spent: 0.2614 sec maximalDeformation=0.0656 minLogLikelihood=530386.6214 Total time spent: 0.2498 sec maximalDeformation=0.0388 minLogLikelihood=530375.7370 Total time spent: 0.2516 sec maximalDeformation=0.0790 minLogLikelihood=530355.8985 Total time spent: 0.2504 sec maximalDeformation=0.1172 minLogLikelihood=530330.5014 Total time spent: 0.2519 sec maximalDeformation=0.1260 minLogLikelihood=530306.5967 Total time spent: 0.4686 sec maximalDeformation=0.2069 minLogLikelihood=530286.5462 Total time spent: 0.2500 sec maximalDeformation=0.0000 minLogLikelihood=530286.5462 Total time spent: 0.0000 sec maximalDeformationApplied: 0.5472 ======================================================= iterationNumber: 10 EM converged! maximalDeformation=0.1250 minLogLikelihood=530244.5032 Total time spent: 0.6366 sec maximalDeformation=0.0878 minLogLikelihood=530237.3077 Total time spent: 0.2149 sec maximalDeformation=0.0341 minLogLikelihood=530232.0900 Total time spent: 0.2202 sec maximalDeformation=0.0647 minLogLikelihood=530219.8849 Total time spent: 0.4281 sec maximalDeformation=0.1104 minLogLikelihood=530208.3104 Total time spent: 0.2214 sec maximalDeformation=0.0937 minLogLikelihood=530200.0316 Total time spent: 0.4311 sec maximalDeformation=0.1382 minLogLikelihood=530190.5120 Total time spent: 0.2323 sec maximalDeformation=0.0535 minLogLikelihood=530183.3653 Total time spent: 0.2313 sec maximalDeformation=0.0821 minLogLikelihood=530171.1956 Total time spent: 0.4377 sec maximalDeformation=0.1197 minLogLikelihood=530169.8735 Total time spent: 0.3926 sec maximalDeformation=0.1133 minLogLikelihood=530164.7997 Total time spent: 0.2414 sec maximalDeformation=0.0411 minLogLikelihood=530158.9338 Total time spent: 0.2494 sec maximalDeformation=0.0517 minLogLikelihood=530151.5072 Total time spent: 0.2457 sec maximalDeformation=0.0672 minLogLikelihood=530143.9644 Total time spent: 0.2456 sec maximalDeformation=0.0624 minLogLikelihood=530135.4687 Total time spent: 0.2504 sec maximalDeformation=0.0709 minLogLikelihood=530126.5788 Total time spent: 0.2480 sec maximalDeformation=0.0594 minLogLikelihood=530116.7649 Total time spent: 0.2572 sec maximalDeformation=0.0747 minLogLikelihood=530107.1511 Total time spent: 0.2561 sec maximalDeformation=0.0606 minLogLikelihood=530095.4938 Total time spent: 0.2620 sec maximalDeformation=0.0925 minLogLikelihood=530092.6888 Total time spent: 0.4487 sec maximalDeformation=0.0000 minLogLikelihood=530092.6888 Total time spent: 0.0000 sec maximalDeformationApplied: 0.5570 ======================================================= iterationNumber: 11 EM converged! maximalDeformation=0.3474 minLogLikelihood=530079.1414 Total time spent: 0.7336 sec maximalDeformation=0.0411 minLogLikelihood=530073.6818 Total time spent: 0.2123 sec maximalDeformation=0.0774 minLogLikelihood=530067.5824 Total time spent: 0.2156 sec maximalDeformation=0.1062 minLogLikelihood=530061.9285 Total time spent: 0.2195 sec maximalDeformation=0.1349 minLogLikelihood=530055.2819 Total time spent: 0.2238 sec maximalDeformation=0.0231 minLogLikelihood=530054.4698 Total time spent: 0.6421 sec maximalDeformation=0.0385 minLogLikelihood=530053.1313 Total time spent: 0.2296 sec maximalDeformation=0.0827 minLogLikelihood=530052.1264 Total time spent: 0.2383 sec maximalDeformation=0.0344 minLogLikelihood=530048.9074 Total time spent: 0.2316 sec maximalDeformation=0.0773 minLogLikelihood=530048.2572 Total time spent: 0.2283 sec maximalDeformation=0.0556 minLogLikelihood=530041.3699 Total time spent: 0.2311 sec maximalDeformation=0.0691 minLogLikelihood=530037.3957 Total time spent: 0.2365 sec maximalDeformation=0.0570 minLogLikelihood=530033.8219 Total time spent: 0.2393 sec maximalDeformation=0.0542 minLogLikelihood=530029.7156 Total time spent: 0.2375 sec maximalDeformation=0.0330 minLogLikelihood=530026.0716 Total time spent: 0.2471 sec maximalDeformation=0.0435 minLogLikelihood=530021.4297 Total time spent: 0.2386 sec maximalDeformation=0.0813 minLogLikelihood=530015.1758 Total time spent: 0.2378 sec maximalDeformation=0.0898 minLogLikelihood=530008.2309 Total time spent: 0.2398 sec maximalDeformation=0.0747 minLogLikelihood=530001.8173 Total time spent: 0.2351 sec maximalDeformation=0.0793 minLogLikelihood=529995.4622 Total time spent: 0.2355 sec maximalDeformation=0.0000 minLogLikelihood=529995.4622 Total time spent: 0.0000 sec maximalDeformationApplied: 0.5043 ======================================================= iterationNumber: 12 EM converged! maximalDeformation=0.2443 minLogLikelihood=529985.9017 Total time spent: 0.7555 sec maximalDeformation=0.0371 minLogLikelihood=529979.6350 Total time spent: 0.2293 sec maximalDeformation=0.0566 minLogLikelihood=529974.7083 Total time spent: 0.2296 sec maximalDeformation=0.0612 minLogLikelihood=529970.3989 Total time spent: 0.2252 sec 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz Transforming points Transforming points Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level1.txt.gz Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.005 MaximalDeformationStopCriterion: 0.005 Verbose: 1 [BRACKETING] Found a really good solution -- no need for zooming: 1 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 8.09847 ----------------------- [BRACKETING] Hit a really bad solution -- ready for zooming: 4.22105 [ZOOMING] Zooming with low=0 and high=4.22105 bisected: 2.11053 [ZOOMING] Found a good solution: 2.11053 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 1.4161 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.147241 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.107382 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.0663932 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.0253348 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.0399364 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.0202335 ----------------------- [BRACKETING] Found a really good solution -- no need for zooming: 0.00464887 ----------------------- Optimizer: maximalDeformation is too small; stopping 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 maximalDeformation=0.0905 minLogLikelihood=529965.2772 Total time spent: 0.2266 sec maximalDeformation=0.0553 minLogLikelihood=529963.6130 Total time spent: 0.6195 sec maximalDeformation=0.0184 minLogLikelihood=529962.7263 Total time spent: 0.2347 sec maximalDeformation=0.0265 minLogLikelihood=529961.0157 Total time spent: 0.2379 sec maximalDeformation=0.0517 minLogLikelihood=529959.5923 Total time spent: 0.2418 sec maximalDeformation=0.0367 minLogLikelihood=529956.7852 Total time spent: 0.2428 sec maximalDeformation=0.0814 minLogLikelihood=529954.7864 Total time spent: 0.2490 sec maximalDeformation=0.0971 minLogLikelihood=529950.1406 Total time spent: 0.4624 sec maximalDeformation=0.0200 minLogLikelihood=529947.3491 Total time spent: 0.2581 sec maximalDeformation=0.0288 minLogLikelihood=529944.5636 Total time spent: 0.2535 sec maximalDeformation=0.0360 minLogLikelihood=529943.7649 Total time spent: 0.4574 sec maximalDeformation=0.0412 minLogLikelihood=529941.1880 Total time spent: 0.2573 sec maximalDeformation=0.0681 minLogLikelihood=529938.7226 Total time spent: 0.2508 sec maximalDeformation=0.0344 minLogLikelihood=529937.8877 Total time spent: 0.4575 sec maximalDeformation=0.0609 minLogLikelihood=529936.1963 Total time spent: 0.2533 sec maximalDeformation=0.0386 minLogLikelihood=529931.6855 Total time spent: 0.2480 sec maximalDeformation=0.0000 minLogLikelihood=529931.6855 Total time spent: 0.0000 sec maximalDeformationApplied: 0.4383 ======================================================= iterationNumber: 13 EM converged! maximalDeformation=0.0298 minLogLikelihood=529926.8746 Total time spent: 1.1355 sec maximalDeformation=0.0111 minLogLikelihood=529925.9039 Total time spent: 0.2137 sec maximalDeformation=0.0897 minLogLikelihood=529925.6919 Total time spent: 0.2182 sec maximalDeformation=0.0187 minLogLikelihood=529923.4326 Total time spent: 0.2197 sec maximalDeformation=0.0464 minLogLikelihood=529920.2988 Total time spent: 0.2213 sec maximalDeformation=0.0397 minLogLikelihood=529916.2353 Total time spent: 0.2251 sec maximalDeformation=0.0594 minLogLikelihood=529914.9334 Total time spent: 0.4271 sec maximalDeformation=0.0157 minLogLikelihood=529913.5255 Total time spent: 0.2351 sec maximalDeformation=0.0119 minLogLikelihood=529912.3757 Total time spent: 0.2377 sec maximalDeformation=0.0185 minLogLikelihood=529910.8669 Total time spent: 0.2367 sec maximalDeformation=0.0243 minLogLikelihood=529908.7423 Total time spent: 0.2440 sec maximalDeformation=0.0188 minLogLikelihood=529907.0289 Total time spent: 0.2474 sec maximalDeformation=0.0359 minLogLikelihood=529905.1022 Total time spent: 0.2519 sec maximalDeformation=0.0169 minLogLikelihood=529903.0068 Total time spent: 0.2463 sec maximalDeformation=0.0536 minLogLikelihood=529900.6766 Total time spent: 0.2528 sec maximalDeformation=0.0170 minLogLikelihood=529898.1848 Total time spent: 0.2635 sec maximalDeformation=0.0394 minLogLikelihood=529895.4931 Total time spent: 0.2502 sec maximalDeformation=0.0304 minLogLikelihood=529892.9261 Total time spent: 0.2467 sec maximalDeformation=0.0424 minLogLikelihood=529890.2980 Total time spent: 0.2523 sec maximalDeformation=0.0513 minLogLikelihood=529887.1174 Total time spent: 0.2490 sec maximalDeformation=0.0000 minLogLikelihood=529887.1174 Total time spent: 0.0000 sec maximalDeformationApplied: 0.3618 ======================================================= iterationNumber: 0 EM converged! maximalDeformation=1.0000 minLogLikelihood=4171214.0626 Total time spent: 1.9641 sec maximalDeformation=0.5208 minLogLikelihood=4169654.5651 Total time spent: 1.1042 sec maximalDeformation=0.2521 minLogLikelihood=4168027.1024 Total time spent: 0.6217 sec maximalDeformation=0.3840 minLogLikelihood=4165960.4992 Total time spent: 1.1423 sec maximalDeformation=0.1533 minLogLikelihood=4165114.0819 Total time spent: 1.9007 sec maximalDeformation=0.0325 minLogLikelihood=4164982.0512 Total time spent: 2.8626 sec maximalDeformation=0.3963 minLogLikelihood=4162377.5423 Total time spent: 0.6562 sec maximalDeformation=0.2592 minLogLikelihood=4161120.4056 Total time spent: 1.3484 sec maximalDeformation=0.0961 minLogLikelihood=4160717.6468 Total time spent: 1.4665 sec maximalDeformation=0.2949 minLogLikelihood=4158159.5619 Total time spent: 0.7058 sec maximalDeformation=0.4249 minLogLikelihood=4155839.3792 Total time spent: 0.9008 sec maximalDeformation=0.1807 minLogLikelihood=4154984.3184 Total time spent: 1.3541 sec maximalDeformation=0.2225 minLogLikelihood=4152952.3435 Total time spent: 0.6831 sec maximalDeformation=0.2258 minLogLikelihood=4151498.4999 Total time spent: 1.2502 sec maximalDeformation=0.2408 minLogLikelihood=4149986.5045 Total time spent: 0.9202 sec maximalDeformation=0.1890 minLogLikelihood=4148586.1479 Total time spent: 1.0320 sec maximalDeformation=0.1633 minLogLikelihood=4147006.2761 Total time spent: 0.6715 sec maximalDeformation=0.0715 minLogLikelihood=4146795.3980 Total time spent: 1.3805 sec maximalDeformation=0.1570 minLogLikelihood=4145526.5333 Total time spent: 1.2693 sec maximalDeformation=0.6253 minLogLikelihood=4142281.7843 Total time spent: 1.9364 sec maximalDeformation=0.0000 minLogLikelihood=4142281.7843 Total time spent: 0.0000 sec maximalDeformationApplied: 4.8261 ======================================================= iterationNumber: 1 EM converged! maximalDeformation=0.5000 minLogLikelihood=4140164.8560 Total time spent: 2.2011 sec maximalDeformation=0.2997 minLogLikelihood=4138231.0328 Total time spent: 1.2044 sec maximalDeformation=0.5818 minLogLikelihood=4133560.9101 Total time spent: 0.9464 sec maximalDeformation=0.7044 minLogLikelihood=4128758.0377 Total time spent: 0.8813 sec maximalDeformation=0.8397 minLogLikelihood=4125073.6432 Total time spent: 0.7781 sec maximalDeformation=1.1653 minLogLikelihood=4121225.3891 Total time spent: 0.6294 sec maximalDeformation=0.7338 minLogLikelihood=4120203.3598 Total time spent: 0.7060 sec maximalDeformation=0.1766 minLogLikelihood=4119361.1130 Total time spent: 1.5384 sec maximalDeformation=0.4178 minLogLikelihood=4119126.2727 Total time spent: 0.6322 sec maximalDeformation=0.3784 minLogLikelihood=4117946.1368 Total time spent: 0.6497 sec maximalDeformation=0.4443 minLogLikelihood=4117623.7232 Total time spent: 0.8397 sec maximalDeformation=0.1314 minLogLikelihood=4116514.9793 Total time spent: 0.6525 sec maximalDeformation=0.3039 minLogLikelihood=4115080.7889 Total time spent: 0.6663 sec maximalDeformation=0.4615 minLogLikelihood=4112802.8546 Total time spent: 1.2399 sec maximalDeformation=0.3859 minLogLikelihood=4110283.1154 Total time spent: 0.8739 sec maximalDeformation=1.0230 minLogLikelihood=4107959.0116 Total time spent: 0.6623 sec maximalDeformation=0.2783 minLogLikelihood=4106840.9003 Total time spent: 1.1271 sec maximalDeformation=0.2816 minLogLikelihood=4106526.0255 Total time spent: 0.9853 sec maximalDeformation=0.0669 minLogLikelihood=4106459.5085 Total time spent: 1.9083 sec maximalDeformation=0.1628 minLogLikelihood=4106149.3650 Total time spent: 0.6937 sec maximalDeformation=0.0000 minLogLikelihood=4106149.3650 Total time spent: 0.0000 sec maximalDeformationApplied: 4.5344 ======================================================= iterationNumber: 2 EM converged! maximalDeformation=1.0000 minLogLikelihood=4103726.0788 Total time spent: 1.8484 sec maximalDeformation=0.5809 minLogLikelihood=4102340.3885 Total time spent: 0.6223 sec maximalDeformation=0.7504 minLogLikelihood=4100154.8443 Total time spent: 0.6235 sec maximalDeformation=0.3043 minLogLikelihood=4099548.6884 Total time spent: 0.8826 sec maximalDeformation=0.2658 minLogLikelihood=4099050.4421 Total time spent: 1.1993 sec maximalDeformation=0.6082 minLogLikelihood=4097444.9644 Total time spent: 1.2040 sec maximalDeformation=0.2474 minLogLikelihood=4096789.2587 Total time spent: 1.1392 sec maximalDeformation=0.3952 minLogLikelihood=4096048.0806 Total time spent: 0.6728 sec maximalDeformation=0.2379 minLogLikelihood=4095416.8644 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 Total time spent: 0.9572 sec maximalDeformation=0.1837 minLogLikelihood=4094977.1969 Total time spent: 0.8692 sec maximalDeformation=0.2755 minLogLikelihood=4094377.3268 Total time spent: 1.0662 sec maximalDeformation=0.2348 minLogLikelihood=4093929.4840 Total time spent: 0.6712 sec maximalDeformation=0.1269 minLogLikelihood=4093722.8194 Total time spent: 1.2840 sec maximalDeformation=0.3121 minLogLikelihood=4093328.6349 Total time spent: 0.6780 sec maximalDeformation=0.1462 minLogLikelihood=4093195.6763 Total time spent: 0.7486 sec maximalDeformation=0.0554 minLogLikelihood=4093058.0176 Total time spent: 0.6853 sec maximalDeformation=0.2305 minLogLikelihood=4092711.6950 Total time spent: 0.6705 sec maximalDeformation=0.2865 minLogLikelihood=4092576.8497 Total time spent: 0.9913 sec maximalDeformation=0.1686 minLogLikelihood=4092039.2161 Total time spent: 0.6883 sec maximalDeformation=0.3655 minLogLikelihood=4091154.6274 Total time spent: 0.6860 sec maximalDeformation=0.0000 minLogLikelihood=4091154.6274 Total time spent: 0.0000 sec maximalDeformationApplied: 2.4847 ======================================================= iterationNumber: 3 EM converged! maximalDeformation=1.0000 minLogLikelihood=4090084.5206 Total time spent: 1.9236 sec maximalDeformation=0.3902 minLogLikelihood=4089120.2872 Total time spent: 0.6493 sec maximalDeformation=0.4996 minLogLikelihood=4088477.0932 Total time spent: 0.8207 sec maximalDeformation=0.2830 minLogLikelihood=4088117.3334 Total time spent: 0.9490 sec maximalDeformation=0.1920 minLogLikelihood=4087835.1018 Total time spent: 0.7045 sec maximalDeformation=0.4127 minLogLikelihood=4087284.8734 Total time spent: 0.7179 sec maximalDeformation=0.3066 minLogLikelihood=4087001.1778 Total time spent: 0.9233 sec maximalDeformation=0.2048 minLogLikelihood=4086704.3346 Total time spent: 0.7078 sec maximalDeformation=0.1719 minLogLikelihood=4086427.7989 Total time spent: 0.6951 sec maximalDeformation=0.5523 minLogLikelihood=4086271.4691 Total time spent: 0.7695 sec maximalDeformation=0.2948 minLogLikelihood=4085971.6691 Total time spent: 0.6851 sec maximalDeformation=0.1722 minLogLikelihood=4085576.8765 Total time spent: 0.6821 sec maximalDeformation=0.4881 minLogLikelihood=4084557.0446 Total time spent: 0.7001 sec maximalDeformation=0.2015 minLogLikelihood=4084148.6757 Total time spent: 1.2455 sec maximalDeformation=0.1419 minLogLikelihood=4083703.5687 Total time spent: 0.7615 sec maximalDeformation=0.0810 minLogLikelihood=4083585.0472 Total time spent: 0.9121 sec maximalDeformation=0.2809 minLogLikelihood=4083096.6668 Total time spent: 0.6835 sec maximalDeformation=0.1231 minLogLikelihood=4082949.7275 Total time spent: 1.2137 sec maximalDeformation=0.2071 minLogLikelihood=4082756.9074 Total time spent: 1.4442 sec maximalDeformation=0.2231 minLogLikelihood=4082602.6141 Total time spent: 0.8329 sec maximalDeformation=0.0000 minLogLikelihood=4082602.6141 Total time spent: 0.0000 sec maximalDeformationApplied: 1.9235 ======================================================= iterationNumber: 4 EM converged! maximalDeformation=0.4236 minLogLikelihood=4082205.9981 Total time spent: 2.5150 sec maximalDeformation=0.0199 minLogLikelihood=4082157.4071 Total time spent: 0.6169 sec maximalDeformation=0.1740 minLogLikelihood=4081682.0974 Total time spent: 0.6350 sec maximalDeformation=0.3867 minLogLikelihood=4081059.0889 Total time spent: 0.6400 sec maximalDeformation=0.2447 minLogLikelihood=4080822.1769 Total time spent: 0.9478 sec maximalDeformation=0.0889 minLogLikelihood=4080788.3708 Total time spent: 1.1914 sec maximalDeformation=0.2553 minLogLikelihood=4080714.7930 Total time spent: 0.6623 sec maximalDeformation=0.1154 minLogLikelihood=4080699.2146 Total time spent: 1.2490 sec maximalDeformation=0.1633 minLogLikelihood=4080577.9926 Total time spent: 0.6681 sec maximalDeformation=0.2925 minLogLikelihood=4080317.5567 Total time spent: 1.1464 sec maximalDeformation=0.0983 minLogLikelihood=4080153.1090 Total time spent: 1.1949 sec maximalDeformation=0.0664 minLogLikelihood=4080075.4513 Total time spent: 1.7356 sec maximalDeformation=0.2075 minLogLikelihood=4079911.8670 Total time spent: 0.7414 sec maximalDeformation=0.1797 minLogLikelihood=4079790.0907 Total time spent: 1.3549 sec maximalDeformation=0.2118 minLogLikelihood=4079559.1689 Total time spent: 0.7362 sec maximalDeformation=0.1242 minLogLikelihood=4079351.0135 Total time spent: 0.7271 sec maximalDeformation=0.5510 minLogLikelihood=4078937.6228 Total time spent: 0.9755 sec maximalDeformation=0.4097 minLogLikelihood=4078789.3214 Total time spent: 0.8487 sec maximalDeformation=0.1797 minLogLikelihood=4078715.9924 Total time spent: 0.8000 sec maximalDeformation=0.3821 minLogLikelihood=4078423.0022 Total time spent: 0.7034 sec maximalDeformation=0.0000 minLogLikelihood=4078423.0022 Total time spent: 0.0000 sec maximalDeformationApplied: 1.7470 ======================================================= iterationNumber: 5 EM converged! maximalDeformation=0.5000 minLogLikelihood=4077984.6139 Total time spent: 2.4157 sec maximalDeformation=0.1263 minLogLikelihood=4077708.1675 Total time spent: 0.6388 sec maximalDeformation=0.4681 minLogLikelihood=4077391.0954 Total time spent: 0.8762 sec maximalDeformation=0.2585 minLogLikelihood=4077203.9653 Total time spent: 0.6480 sec maximalDeformation=0.2894 minLogLikelihood=4077124.6287 Total time spent: 0.6446 sec maximalDeformation=0.0836 minLogLikelihood=4077046.6187 Total time spent: 0.6624 sec maximalDeformation=0.1401 minLogLikelihood=4076865.0775 Total time spent: 0.6839 sec maximalDeformation=0.1503 minLogLikelihood=4076647.4795 Total time spent: 0.9453 sec maximalDeformation=0.3891 minLogLikelihood=4076351.3077 Total time spent: 0.6945 sec maximalDeformation=0.2462 minLogLikelihood=4076294.3619 Total time spent: 1.3340 sec maximalDeformation=0.2295 minLogLikelihood=4076156.5087 Total time spent: 0.7102 sec maximalDeformation=0.0723 minLogLikelihood=4076081.1875 Total time spent: 0.7405 sec maximalDeformation=0.3655 minLogLikelihood=4075746.9124 Total time spent: 0.7398 sec maximalDeformation=0.2999 minLogLikelihood=4075482.6191 Total time spent: 0.9010 sec maximalDeformation=0.2973 minLogLikelihood=4075332.3658 Total time spent: 1.6484 sec maximalDeformation=0.2382 minLogLikelihood=4075080.0533 Total time spent: 0.7400 sec maximalDeformation=0.3230 minLogLikelihood=4074761.6762 Total time spent: 0.7376 sec maximalDeformation=0.7100 minLogLikelihood=4074601.5063 Total time spent: 1.3667 sec maximalDeformation=0.5541 minLogLikelihood=4074301.6936 Total time spent: 0.7301 sec maximalDeformation=0.2692 minLogLikelihood=4073902.0626 Total time spent: 0.7402 sec maximalDeformation=0.0000 minLogLikelihood=4073902.0626 Total time spent: 0.0000 sec maximalDeformationApplied: 1.6995 ======================================================= iterationNumber: 6 EM converged! maximalDeformation=0.5000 minLogLikelihood=4073478.9250 Total time spent: 2.5445 sec maximalDeformation=0.6284 minLogLikelihood=4073233.5520 Total time spent: 0.6632 sec maximalDeformation=0.1992 minLogLikelihood=4073039.4293 Total time spent: 0.6632 sec maximalDeformation=0.2462 minLogLikelihood=4072881.9548 Total time spent: 0.6562 sec maximalDeformation=0.3760 minLogLikelihood=4072878.1256 Total time spent: 0.6931 sec maximalDeformation=0.1597 minLogLikelihood=4072787.2562 Total time spent: 0.6964 sec maximalDeformation=0.1592 minLogLikelihood=4072707.0133 Total time spent: 0.7099 sec maximalDeformation=0.1410 minLogLikelihood=4072588.6448 Total time spent: 0.6848 sec maximalDeformation=0.3586 minLogLikelihood=4072490.1965 Total time spent: 0.6965 sec maximalDeformation=0.1211 minLogLikelihood=4072337.2021 Total time spent: 0.7066 sec maximalDeformation=0.1728 minLogLikelihood=4072197.0932 Total time spent: 0.8371 sec maximalDeformation=0.2035 minLogLikelihood=4072039.3821 Total time spent: 0.7246 sec maximalDeformation=0.4192 minLogLikelihood=4071882.0762 Total time spent: 0.7168 sec 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 maximalDeformation=0.3176 minLogLikelihood=4071761.5779 Total time spent: 1.3747 sec maximalDeformation=0.2091 minLogLikelihood=4071582.6490 Total time spent: 0.7350 sec maximalDeformation=0.2279 minLogLikelihood=4071407.4971 Total time spent: 0.7375 sec maximalDeformation=0.1863 minLogLikelihood=4071367.6384 Total time spent: 1.3454 sec maximalDeformation=0.1715 minLogLikelihood=4071296.1703 Total time spent: 0.7414 sec maximalDeformation=0.0743 minLogLikelihood=4071243.0061 Total time spent: 0.7431 sec maximalDeformation=0.2528 minLogLikelihood=4071160.2898 Total time spent: 0.7459 sec maximalDeformation=0.0000 minLogLikelihood=4071160.2898 Total time spent: 0.0000 sec maximalDeformationApplied: 1.4864 ======================================================= iterationNumber: 7 EM converged! maximalDeformation=0.5000 minLogLikelihood=4071062.5008 Total time spent: 2.2159 sec maximalDeformation=0.0382 minLogLikelihood=4071011.7267 Total time spent: 0.6975 sec maximalDeformation=0.2231 minLogLikelihood=4070898.4880 Total time spent: 1.4031 sec maximalDeformation=0.2317 minLogLikelihood=4070871.2429 Total time spent: 0.6868 sec maximalDeformation=0.1281 minLogLikelihood=4070812.1532 Total time spent: 0.6958 sec maximalDeformation=0.0743 minLogLikelihood=4070757.1621 Total time spent: 0.7221 sec maximalDeformation=0.1465 minLogLikelihood=4070688.8351 Total time spent: 0.7280 sec maximalDeformation=0.1253 minLogLikelihood=4070638.4885 Total time spent: 0.7039 sec maximalDeformation=0.2258 minLogLikelihood=4070563.7248 Total time spent: 0.7096 sec maximalDeformation=0.1459 minLogLikelihood=4070487.9209 Total time spent: 0.7466 sec maximalDeformation=0.1514 minLogLikelihood=4070394.8076 Total time spent: 0.7284 sec maximalDeformation=0.1640 minLogLikelihood=4070368.2565 Total time spent: 1.3881 sec maximalDeformation=0.1472 minLogLikelihood=4070329.2396 Total time spent: 0.7659 sec maximalDeformation=0.1921 minLogLikelihood=4070317.4489 Total time spent: 1.4096 sec maximalDeformation=0.0729 minLogLikelihood=4070302.6567 Total time spent: 0.7439 sec maximalDeformation=0.0909 minLogLikelihood=4070248.9454 Total time spent: 0.7689 sec maximalDeformation=0.2498 minLogLikelihood=4070172.4386 Total time spent: 0.7670 sec maximalDeformation=0.2802 minLogLikelihood=4070095.0565 Total time spent: 0.7572 sec maximalDeformation=0.1023 minLogLikelihood=4070028.0247 Total time spent: 1.3294 sec maximalDeformation=0.1902 minLogLikelihood=4069917.4604 Total time spent: 0.7631 sec maximalDeformation=0.0000 minLogLikelihood=4069917.4604 Total time spent: 0.0000 sec maximalDeformationApplied: 0.9727 ======================================================= iterationNumber: 8 EM converged! maximalDeformation=1.0000 minLogLikelihood=4069859.3647 Total time spent: 1.9663 sec maximalDeformation=0.1530 minLogLikelihood=4069821.5749 Total time spent: 0.6433 sec maximalDeformation=0.0763 minLogLikelihood=4069804.0312 Total time spent: 0.6610 sec maximalDeformation=0.0318 minLogLikelihood=4069795.8040 Total time spent: 0.6614 sec maximalDeformation=0.1988 minLogLikelihood=4069763.3143 Total time spent: 0.6678 sec maximalDeformation=0.3890 minLogLikelihood=4069746.7023 Total time spent: 0.6728 sec maximalDeformation=0.1853 minLogLikelihood=4069710.4397 Total time spent: 0.7052 sec maximalDeformation=0.2552 minLogLikelihood=4069673.9727 Total time spent: 0.6716 sec maximalDeformation=0.1054 minLogLikelihood=4069650.5515 Total time spent: 0.6997 sec maximalDeformation=0.1415 minLogLikelihood=4069632.0139 Total time spent: 0.7231 sec maximalDeformation=0.0922 minLogLikelihood=4069619.5182 Total time spent: 0.7124 sec maximalDeformation=0.2465 minLogLikelihood=4069602.1625 Total time spent: 1.3701 sec maximalDeformation=0.2562 minLogLikelihood=4069576.2310 Total time spent: 0.7101 sec maximalDeformation=0.1680 minLogLikelihood=4069520.1654 Total time spent: 0.6920 sec maximalDeformation=0.2440 minLogLikelihood=4069459.5250 Total time spent: 0.6645 sec maximalDeformation=0.1333 minLogLikelihood=4069402.7787 Total time spent: 0.6688 sec maximalDeformation=0.2166 minLogLikelihood=4069378.8081 Total time spent: 0.6826 sec maximalDeformation=0.1864 minLogLikelihood=4069326.0843 Total time spent: 0.7104 sec maximalDeformation=0.0921 minLogLikelihood=4069267.1181 Total time spent: 0.6972 sec maximalDeformation=0.2266 minLogLikelihood=4069202.9918 Total time spent: 0.6990 sec maximalDeformation=0.0000 minLogLikelihood=4069202.9918 Total time spent: 0.0000 sec maximalDeformationApplied: 1.0801 ======================================================= iterationNumber: 9 EM converged! maximalDeformation=0.2500 minLogLikelihood=4069118.9192 Total time spent: 2.1669 sec maximalDeformation=0.0939 minLogLikelihood=4069096.3786 Total time spent: 0.6462 sec maximalDeformation=0.0201 minLogLikelihood=4069087.2410 Total time spent: 0.6389 sec maximalDeformation=0.2575 minLogLikelihood=4069024.6254 Total time spent: 0.6617 sec maximalDeformation=0.1500 minLogLikelihood=4068986.1647 Total time spent: 0.6591 sec maximalDeformation=0.1792 minLogLikelihood=4068955.7067 Total time spent: 0.6631 sec maximalDeformation=0.0830 minLogLikelihood=4068927.4695 Total time spent: 0.6849 sec maximalDeformation=0.1175 minLogLikelihood=4068902.5292 Total time spent: 0.6905 sec maximalDeformation=0.0604 minLogLikelihood=4068878.9243 Total time spent: 0.6999 sec maximalDeformation=0.1255 minLogLikelihood=4068849.8207 Total time spent: 0.6898 sec maximalDeformation=0.1136 minLogLikelihood=4068819.9873 Total time spent: 0.7048 sec maximalDeformation=0.0817 minLogLikelihood=4068781.0954 Total time spent: 0.7132 sec maximalDeformation=0.1037 minLogLikelihood=4068742.9269 Total time spent: 0.7337 sec maximalDeformation=0.1447 minLogLikelihood=4068704.6364 Total time spent: 0.7290 sec maximalDeformation=0.1524 minLogLikelihood=4068658.4069 Total time spent: 0.7550 sec maximalDeformation=0.0784 minLogLikelihood=4068655.0088 Total time spent: 1.4252 sec maximalDeformation=0.0606 minLogLikelihood=4068642.9798 Total time spent: 0.7461 sec maximalDeformation=0.0647 minLogLikelihood=4068637.2155 Total time spent: 1.3426 sec maximalDeformation=0.1469 minLogLikelihood=4068623.4754 Total time spent: 0.7196 sec maximalDeformation=0.1593 minLogLikelihood=4068582.5666 Total time spent: 1.7328 sec maximalDeformation=0.0000 minLogLikelihood=4068582.5666 Total time spent: 0.0000 sec maximalDeformationApplied: 0.8463 ======================================================= iterationNumber: 10 EM converged! maximalDeformation=0.1852 minLogLikelihood=4068533.9703 Total time spent: 3.1865 sec maximalDeformation=0.0514 minLogLikelihood=4068507.8091 Total time spent: 0.6369 sec maximalDeformation=0.1413 minLogLikelihood=4068480.5342 Total time spent: 0.6560 sec maximalDeformation=0.1558 minLogLikelihood=4068466.7696 Total time spent: 0.6413 sec maximalDeformation=0.0664 minLogLikelihood=4068451.6757 Total time spent: 0.6530 sec maximalDeformation=0.0616 minLogLikelihood=4068435.6295 Total time spent: 0.6781 sec maximalDeformation=0.1455 minLogLikelihood=4068420.6317 Total time spent: 0.6836 sec maximalDeformation=0.0963 minLogLikelihood=4068403.1767 Total time spent: 0.6678 sec maximalDeformation=0.1042 minLogLikelihood=4068380.5135 Total time spent: 0.6656 sec maximalDeformation=0.1011 minLogLikelihood=4068363.2234 Total time spent: 0.6905 sec maximalDeformation=0.0916 minLogLikelihood=4068341.2498 Total time spent: 0.6971 sec maximalDeformation=0.1232 minLogLikelihood=4068316.8281 Total time spent: 0.6900 sec maximalDeformation=0.2243 minLogLikelihood=4068314.2096 Total time spent: 0.6924 sec maximalDeformation=0.1695 minLogLikelihood=4068282.8913 Total time spent: 0.7109 sec maximalDeformation=0.2203 minLogLikelihood=4068261.6850 Total time spent: 0.7086 sec maximalDeformation=0.0395 minLogLikelihood=4068242.9601 Total time spent: 0.6966 sec maximalDeformation=0.1312 minLogLikelihood=4068219.2440 Total time spent: 0.6965 sec 1 0.398942 SLIDING L-BFGS BFGS-MaximumMemoryLength: 12 LineSearchMaximalDeformationIntervalStopCriterion: 0.001 MaximalDeformationStopCriterion: 0.001 MaximumNumberOfIterations: 20 Verbose: 0 Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz Transforming points Transforming points Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz Read mesh collection: /opt/aumc-apps-eb/software/FreeSurfer/7.3.2-centos8_x86_64/average/samseg/20Subjects_smoothing2_down2_smoothingForAffine2/atlas_level2.txt.gz Constructing image-to-world transform from header information (5771302/5771302_y0_t1_n3_lesion_mask_leap-filled.nii.gz) Read image: 5771302/5771302_y0_t1_n3_lesion_mask_leap-filled.nii.gz maximalDeformation=0.1186 minLogLikelihood=4068198.9751 Total time spent: 0.7249 sec maximalDeformation=0.0767 minLogLikelihood=4068173.4187 Total time spent: 0.7444 sec maximalDeformation=0.1752 minLogLikelihood=4068141.1179 Total time spent: 0.7179 sec maximalDeformation=0.0000 minLogLikelihood=4068141.1179 Total time spent: 0.0000 sec maximalDeformationApplied: 0.7151 ======================================================= iterationNumber: 11 EM converged! maximalDeformation=0.1250 minLogLikelihood=4068097.7265 Total time spent: 2.1974 sec maximalDeformation=0.0600 minLogLikelihood=4068083.6661 Total time spent: 0.6355 sec maximalDeformation=0.0160 minLogLikelihood=4068080.6911 Total time spent: 0.6778 sec maximalDeformation=0.1525 minLogLikelihood=4068068.6354 Total time spent: 0.6263 sec maximalDeformation=0.1265 minLogLikelihood=4068051.5227 Total time spent: 0.6436 sec maximalDeformation=0.1044 minLogLikelihood=4068035.3537 Total time spent: 0.6420 sec maximalDeformation=0.1033 minLogLikelihood=4068015.4615 Total time spent: 0.6505 sec maximalDeformation=0.1362 minLogLikelihood=4068001.3828 Total time spent: 0.6723 sec maximalDeformation=0.0620 minLogLikelihood=4067987.3188 Total time spent: 0.6505 sec maximalDeformation=0.0668 minLogLikelihood=4067970.7101 Total time spent: 0.6670 sec maximalDeformation=0.0860 minLogLikelihood=4067955.7507 Total time spent: 0.6965 sec maximalDeformation=0.0872 minLogLikelihood=4067940.8880 Total time spent: 0.6957 sec maximalDeformation=0.0949 minLogLikelihood=4067925.0394 Total time spent: 0.7098 sec maximalDeformation=0.0954 minLogLikelihood=4067905.0600 Total time spent: 0.6822 sec maximalDeformation=0.0941 minLogLikelihood=4067885.2774 Total time spent: 0.6746 sec maximalDeformation=0.1226 minLogLikelihood=4067867.1942 Total time spent: 0.6708 sec maximalDeformation=0.0424 minLogLikelihood=4067864.8098 Total time spent: 1.9172 sec maximalDeformation=0.0296 minLogLikelihood=4067858.0438 Total time spent: 0.6680 sec maximalDeformation=0.0251 minLogLikelihood=4067850.5604 Total time spent: 0.6652 sec maximalDeformation=0.1044 minLogLikelihood=4067835.1466 Total time spent: 0.6667 sec maximalDeformation=0.0000 minLogLikelihood=4067835.1466 Total time spent: 0.0000 sec maximalDeformationApplied: 1.0268 ======================================================= using default intracranial structures to compute sbtiv measure run_samseg complete: 0:08:49.537600