Your recon-all was killed – “Command terminated by signal 9”.

 

Was your VM VirtualBox up and running the whole time?

 

Best,

 

Yujing

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Fargol Rezayaraghi
Sent: Friday, December 15, 2023 3:15 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] mri_error_no_clear_message

 

        External Email - Use Caution        

Hi FreeSurfer Team,

I hope this email finds you well. 

I'm trying to use a T1 image to get the aparc+aseg and wmparc nifti files. 

 

I was using this command:  recon-all -s Subject1 -i T1.nii - all -notal -check ( I used recon-all -s Subject1 -i T1.nii - all first, and after getting Talairach error, I added -nota -check at the end).

 

I'm getting following messages without clear error number: recon-all -s Subject1 exited with ERRORS at Thu Dec 14 21:18:02 EST 2023

For more details, see the log file /home/developer/Desktop/freesurfer/7.2.0/subjects/Subject1/scripts/recon-all.log
To report a problem, see MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

 

The version of the freesurfer: freesurfer-linux-ubuntu18_x86_64-7.2.0-20210721-aa8f76b

 

My platform is ubuntu 18_04_06 on Oracle VM VirtualBox

 

I've attached the log file. 

 

--

Kind Regards,

Fargol R. Araghi (Rezayaraghi)

Ph.D. Candidate, University of Washington

Department of Mechanical Engineering

MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be www.Kurtlab.com

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