Can you send the full recon-all.log? What platform are you running on?

Hi all,

Having trouble with an error running "recon-all -subjid ${i} -autorecon2” across all subjects.  

Below is where it has the error in recon-all.log.  We also tried running the last command (“ln -s …”) manually and got the error “ln: failed to create symbolic link ‘lh.white.H’: Operation not supported.” whereas the rest of the commands ran normally.

#--------------------------------------------

#@# Curv .H and .K lh Tue Feb  7 07:29:43 EST 2017

/home/jamielh/Volumes/Hanson/Pardini_Projects/K_award/10007/surf

 mris_curvature -w lh.white.preaparc 

total integrated curvature = 18.936*4pi (237.960) --> -18 handles

ICI = 230.2, FI = 1697.2, variation=29040.790

writing Gaussian curvature to ./lh.white.preaparc.K...done.

writing mean curvature to ./lh.white.preaparc.H...done.

rm -f lh.white.H

ln -s lh.white.preaparc.H lh.white.H

Linux pfc 4.4.0-59-generic #80-Ubuntu SMP Fri Jan 6 17:47:47 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s 10007 exited with ERRORS at Tue Feb  7 07:29:46 EST 2017

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

————————————————————————————————————————————————

We also tried the solution laid out in this thread with no luck:

 https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2014-September/040473.html

Any help is very appreciated!

- B. Taylor Hilton

Lab Data Coordinator, University of Pittsburgh

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