It was deleted but then it was created as a link. Does the link exist?


On 3/7/18 1:33 PM, Krishna Patel wrote:
Hi - I would like to do group analysis on freesurfer data that is processed with verson 6. However when I try to run 

recon-all -s subjid -qcache 

I get following error after it runs for some time and generates some of the files. 

 ERROR: cannot find surf/lh.white.K

When I look at the log file - I see that this file was deleted. See following.


total integrated curvature = -1.022*4pi (-12.846) --> 2 handles
ICI = 169.4, FI = 1785.3, variation=28139.036
writing Gaussian curvature to ./lh.white.preaparc.K...done.
writing mean curvature to ./lh.white.preaparc.H...done.
rm -f lh.white.H
ln -s lh.white.preaparc.H lh.white.H
rm -f lh.white.K
ln -s lh.white.preaparc.K lh.white.K


Does anyone have any idea of what might be the issue here?

Thanks,
-Krishna


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer