On Oct 18, 2015, at 14:10, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

you can use the -cm flag, but you might want to try out a beta of v6 instead of 5.3
On Sun, 18 Oct 2015, Yun Wang wrote:

Glad to hear this ! So how should I specify high resolution structure using recon-all command?

On Oct 17, 2015, at 10:09, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:

High resolution fMRI has always been supported. V6 beta has better support for high-resolution structurals. If your fMRI is higher than 1mm isotropic then having higher res structurals (and hence denser cortical meshes) might be useful

cheers
Bruce

On Sat, 17 Oct 2015, Yun Wang wrote:

Can the recon-all for high resolution fMRI data be used in V6 beta freesurfer now? If
so, how to use it?

    On Jun 25, 2015, at 13:36, Allison Moreau <almoreau@nmr.mgh.harvard.edu>
    wrote:
Hi Falk and Thomas,
We are actually working on testing the -hires flag now for the v6 release. We
intend to release it with v6.
-Allison
On 06/25/2015 07:09 AM, Falk Lüsebrink wrote:
    Hi Thomas,

this looks like a really nice script and a lot better than my own. In the
upcoming release of FreeSurfer v.6 my work-around probably is not needed
anymore. However, I haven’t been able to have a look at the dev release yet
and whether the standard recon-all features a flag to process high
resolution data.

Best,
Falk

P.S. Following your instructions one will definitely become a coffee
junkie. :D

Von: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard
.edu] Im Auftrag von Emmerling Thomas (PSYCHOLOGY)
Gesendet: Mittwoch, 24. Juni 2015 14:35
An: freesurfer@nmr.mgh.harvard.edu
Betreff: [Freesurfer] recon-all pipeline for (sub-millimeter) 7T data

Hello!

I wrote a bash script some time ago to process data acquired at a
sub-millimeter resolution following the nice wiki entry of Falk Lüsebrink
(https://surfer.nmr.mgh.harvard.edu/fswiki/HiResRecon). I thought it might
be helpful for others, too, as there are some questions about it in the
mailing list archives, so here it
is: https://github.com/thomastweets/freesurfer-7t-pipeline. I am happy
about any comments!

Best,
Thomas
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The information in this e-mail is intended only for the person to whom it is
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