Hello<br><br>I typed in the command for multiple comparison:<br>$ mri_glmfit-sim --glmdir rh.tp1_mnp_ltm_age_T1.H.Unp.Int.glmdir --cwpvalthresh 0.05 --cache 2.0 pos<br><br>It starts to process, but there is an error (see below). How do I fix this?<br>
Thanks,<br>Jenny <br><br><br>mdline mri_glmfit --y rh.tp1_mnp_ltm_age_T1.H.Unp.Int.thickness.10B.mgh --fsgd tp1_mnp_ltm_age_T1.H.Unp.Int.fsgd dods --C pain_C1_group_diff.mtx --C pain_C3_group_x_painint.mtx --C pain_C6_avg_painint.mtx --surf average rh --cortex --glmdir rh.tp1_mnp_ltm_age_T1.H.Unp.Int.glmdir<br>
SURFACE: average rh<br>log file is rh.tp1_mnp_ltm_age_T1.H.Unp.Int.glmdir/cache.mri_glmfit-sim.log<br><br>cd /study4/NCCAM/Data/MRI/processed/structural/freesurfer<br>/apps/x86_64_sci6/freesurfer-latest/bin/mri_glmfit-sim<br>
--glmdir rh.tp1_mnp_ltm_age_T1.H.Unp.Int.glmdir --cwpvalthresh 0.05 --cache 2.0 pos<br><br>$Id: mri_glmfit-sim,v 1.36.2.1 2011/03/28 15:46:10 greve Exp $<br>Thu Jul 12 15:24:55 CDT 2012<br>Linux <a href="http://balsa.keck.waisman.wisc.edu">balsa.keck.waisman.wisc.edu</a> 2.6.32-220.23.1.el6.x86_64 #1 SMP Mon Jun 18 09:58:09 CDT 2012 x86_64 x86_64 x86_64 GNU/Linux<br>
jliu<br>setenv SUBJECTS_DIR /study/NCCAM/Data/MRI/processed/structural/freesurfer<br>FREESURFER_HOME /apps/x86_64_sci6/freesurfer-latest<br><br>Original mri_glmfit command line:<br>cmdline mri_glmfit --y rh.tp1_mnp_ltm_age_T1.H.Unp.Int.thickness.10B.mgh --fsgd tp1_mnp_ltm_age_T1.H.Unp.Int.fsgd dods --C pain_C1_group_diff.mtx --C pain_C3_group_x_painint.mtx --C pain_C6_avg_painint.mtx --surf average rh --cortex --glmdir rh.tp1_mnp_ltm_age_T1.H.Unp.Int.glmdir<br>
<br>DoSim = 0<br>UseCache = 1<br>DoPoll = 0<br>DoPBSubmit = 0<br>DoBackground = 0<br>DiagCluster = 0<br>gd2mtx = dods<br>fwhm = 13.724818<br>ERROR: cannot find /apps/x86_64_sci6/freesurfer-latest/average/mult-comp-cor/average/rh/cortex/fwhm14/pos/th20/mc-z.csd<br>
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