External Email - Use Caution        

Thanks.

I have sent you the tar by FileDrop.

Stefano

Il 7 maggio 2018 alle 22.23 "Douglas N. Greve" <dgreve@mgh.harvard.edu> ha scritto:

It should not have taken that long. If you want me to look, you can tar
up the glmdir and send it to me on our filedrop (below). You can also
use PALM. I've created a tool to assist in the interface

http://freesurfer.net/fswiki/FsPalm

On 05/07/2018 04:20 PM, stdp82@virgilio.it wrote:
>
>

Thanks.

I have about 40 subjects. The last run went ahead for five days. I
have killed it.

What's do you think about the use of PALM in my study (details are
listed in previous mails)?

Best regards,

Stefano

Il 7 maggio 2018 alle 19.48 "Douglas N. Greve"
<dgreve@mgh.harvard.edu> ha scritto:

It looks right. How many subjects do you have? You can also check
on the
progress by looking at the csd files in the glmdir/csd folder

On 05/03/2018 11:30 AM, stdp82@virgilio.it wrote:
>

Hi list,

I'm running the follow command lines:

1) mri_glmfit --y ces.nii.gz --cortex --surf fsaverage rh --glmdir
MMSE.wls --nii.gz --fsgd g1v1_MMSE.fsgd dods --C intercept.mtx --C
slope.mtx --eres-save

2) mri_glmfit-sim --glmdir MMSE.wls --perm 1000 2.0 abs --cwp 0.05
--bg 1 --3spaces

the computation N.2 (mri_glmfit-sim) is going ahead from two
days...

...Poll 16733 job 1 Sun Apr 29 15:58:41 CEST 2018

I'm suspecting that some what in command lines is wrong... Please
could you check it?

Do you think that for my experimental question (I aiming to
perform a
within group correlatation between the thickness or FC and MMSE
scores) should I use also PALM within mri_glmfit-sim computation?

Thanks

Best regards

Stefano

Il 24 aprile 2018 alle 19.39 Douglas Greve
<dgreve@mgh.harvard.edu>
ha scritto:

Try permutation

http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm

On 4/24/18 8:21 AM, stdp82@virgilio.it
<mailto:stdp82@virgilio.it>
wrote:
>
>

Hi,

I'm performing a group analysis.

I would like to investigate a simple correlation
analysis within
group, aiming to map the clusters showing correlation
between the FC
and the neuropsychological test scores (e.g. MMSE).
Overall, the NPS
test have not a normal distribution of their scores
and, thus,
parametric computation should be discouraged.

Thanks

Stefano

>

Il 19 aprile 2018 alle 18.11 "Douglas N. Greve"
<dgreve@mgh.harvard.edu>
<mailto:dgreve@mgh.harvard.edu> ha
scritto:

I'm not sure what you mean. Can you elaborate? Is
this an
individual
analysis or a group analysis?

On 04/18/2018 10:10 AM, stdp82@virgilio.it
<mailto:stdp82@virgilio.it> wrote:
>

Hi list,

which the best way to perform a whole-brain
correlation of
the FC
assessed by FS-FAST with the volumetic or
neuropsychological outcomes?
Please note that my question is specifically
addressed to those
factors (neuropsycholgical scores or volume of
seed) did
not show a
normal distribution and that cannot be trasformed.

Thanks

Kind regards

Stefano

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