Hi Anri - I do not know what command line you ran and what your configuration file looks like, so it is very hard for me to suggest solutions.

Best,
a.y

On Fri, 27 May 2016, Anri WATANABE wrote:

Hi Anastasia, 
Thank you for your answer.
There aren't stats/*.path.mean.txt files and terminal says 'Could not read /Applications/freesurfer/subjects/cvs_avg35.' I
checked /Application/freesurfer/subjects/cvs_avg35 folder and couldn't find COR-.info file.
Could you tell me any resolutions, please?

Thanks, 
Anri

**********************************************************************
京都府立医科大学附属病院
精神科・心療内科
渡辺 杏里
**********************************************************************
Anri WATANABE, M.D.
Department of Psychiatry,
University Hospital, Kyoto Prefectural University of Medicine
**********************************************************************

2016-05-21 6:48 GMT+09:00 Anastasia Yendiki <ayendiki@nmr.mgh.harvard.edu>:

      Hi Anri - The FA values are extracted in the native space of each subject, which is why those are the only
      coordinates that you see. If you want to display the results of your analysis on an average path, after
      running trac-all -stat, you can use the stats/*.path.mean.txt files (see also the last part of the TRACULA
      tutorial).

      Best,
      a.y

      On Wed, 18 May 2016, Anri WATANABE wrote:

            Dear experts, 
            I use TRACULA to examine a measure (FA) at each voxel in one pathway.
            pathstats.byvoxel.txt files show coordinates in native space and after converting those the new
            files don't show any coordinates which are in MNI space.
            Could you tell me how can I know MNI coordinate values?

            Thank you!


            Regards, 
            Anri



            **********************************************************************
            京都府立医科大学附属病院
            精神科・心療内科
            渡辺 杏里
            **********************************************************************
            Anri WATANABE, M.D.
            Department of Psychiatry,
            University Hospital, Kyoto Prefectural University of Medicine
            **********************************************************************


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