Dear Sara,
You can download Freesurfer 7, install it side by side with FreeSurfer 6, and run the thalamic module on the already reconned subjects.
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Sara PONTICORVO <sponticorvo@unisa.it>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, April 8, 2021 at 03:22
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] thalamic nuclei segmentation
External Email - Use Caution
Hi Freesurfer experts,
I processed ~150 subjects with freesurfer v6 (recon-all) and I was wondering if it is possible to use the script for the segmentation of the thalamic nuclei on these subjects.
I know this part of the processing is now integrated in the v7 of freesurfer, but I'm thinking if there is a way to avoid re-run all the reconstruction with the new version.
I looked in the wiki page, and it seems that there was a way to integrate the scripts in the fs-v6, but I don't find any downloadable package or scripts.
Thanks for your help,
Sara
--
Sara Ponticorvo, PhD
Department of Medicine Surgery and Dentistry
University of Salerno