Hi Carolina

There is a directory freesurfer/matlab which contains several matlab-based scripts for reading and writing (after modified) surface- and volume-based data generated in freesurfer.

Transport files from Linux to Windows will be tedious and things may not work properly, therefore, I recommend you to install Matlab for Linux or you can try with Octave (a kind of GNU Matlab for Linux).

Cheers

Jorge

--- El mar, 5/7/11, Carolina Valencia <cvalencia@linkdx.com.co> escribió:

De: Carolina Valencia <cvalencia@linkdx.com.co>
Asunto: [Freesurfer] Matlab and FS
Para: freesurfer@nmr.mgh.harvard.edu
Fecha: martes, 5 de julio, 2011 17:39

Hello FS'users,

I'm trying to do an histogram of cortical thickness for 2 cases in matlab, but the problem is that I have Installed matlab in a computer (windows) and FS in another one (ubuntu)
Can I configure something to use the FS commands in matlab in order to obtain some graphs?
And also, where can I find the cortical thickness in each regions (Brodmann areas, gyrus or sulci) of the brain in order to compare a normal patient with a patiwnt who has a cortical dysplasia ?

Thanks a lot for your help,

Carolina

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