Dear Jinyoung,

Can you please send us the log, or at least the last few lines before the error?

Also, which exact version are you using? 6.0 or dev?

Cheers,

/Eugenio

Juan Eugenio Iglesias

ERC Senior Research Fellow

Centre for Medical Image Computing (CMIC)

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of 오진영 <jinyoung.oh555@gmail.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Monday, 30 July 2018 at 06:41
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Cc: JongHyun Lee <jonghyunlee1993@gmail.com>
Subject: [Freesurfer] hippocampal subfields segmentation error

External Email - Use Caution

Hello, freesurfer experts

I'm trying to run segmentation of hippocampal subfields and nuclei of amygdala by using "segmentSF_T1.sh" command.

I have downloaded the newest development version(freesurfer v.6.0) and license, as well as the required matlab runtime.

However, I am getting the following error:

mv: rename volumesAmygdala.txt to /Users/mnd_mac/Desktop/JY_surfer/T1_data/Jinyoung_T1/Jinyoung_test/mri/lh.hippoSfVolumes-T1.amygdala.v10.txt: No such file or directory

and I have no idea how to find the text file and solve this problem out.

If you have any idea or recommends, please send me the e-mail back.

Thanks!

Jinyoung