Hi Dough,

I just uploaded one of the files on Martinos Center File Drop. I hope that works !

(Somehow, uploading through ftp was taking too long).

Thanks.

On Mon, Jan 6, 2020 at 11:19 AM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> wrote:

It is not clear why it failed for these subjects (always happens at the
same place). Can you upload one of them for me to take a look at? here
are the instructions

 From the linux command line,
Create the file you want to upload, eg,
cd $SUBJECTS_DIR
tar cvfz subject.tar.gz ./subject
Now log  into our anonymous FTP site:
ftp surfer.nmr.mgh.harvard.edu
It will ask you for a user name: use "anonymous" (no quotes)
It will ask you for a password: use "anonymous" (no quotes)
cd transfer/incoming
binary
put subject.tar.gz
Send an email that the file has been and the name of the file.



On 1/6/20 11:49 AM, Sahil Bajaj wrote:
>
>         External Email - Use Caution
>
> Hi Dough,
>
> I finished recon -all on about 515 subjects and I get error in 11 out
> of 515 subjects. Here I am attaching recon-all.log files of all those
> 11 subjects. I would really appreciate your help in fixing these errors.
>
> Thanks,
> Sahil
>
> On Thu, Jan 2, 2020 at 10:03 AM Greve, Douglas N.,Ph.D.
> <DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu>> wrote:
>
>     Can you send the recon-all.log file? You sent the .error file
>
>     On 12/20/2019 10:13 AM, Sahil Bajaj wrote:
>>
>>             External Email - Use Caution
>>
>>     Hello FS experts,
>>
>>     I am trying to run recon all on about 100 subjects. But one out
>>     of 100 subjects finishes recon all with error, and doesn't
>>     complete the process. Here I am attaching recon all log for your
>>     reference. Also, before installing freesurfer on MAC Catalina, I
>>     ran sudo spctl - -master -disable
>>
>>     I would really appreciate any help in resolving this.
>>
>>     Thanks,
>>     Sahil
>>     1) FreeSurfer version:
>>
>>     freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c
>>
>>     2) Platform: MACOS Catalina
>>     3) recon-all.log: see attached
>>
>>     _______________________________________________
>>     Freesurfer mailing list
>>     Freesurfer@nmr.mgh.harvard.edu  <mailto:Freesurfer@nmr.mgh.harvard.edu>
>>     https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>     _______________________________________________
>     Freesurfer mailing list
>     Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu>
>     https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>



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