New invocation of recon-all Wed Jun 20 09:44:29 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri /usr/local/freesurfer/bin//recon-all -s sub089mri -all -wsatlas subjid sub089mri setenv SUBJECTS_DIR /home/richfrye/Desktop/MRI/sub089 FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4_x86_64-stable-pub-v3.0.5 Linux localhost.localdomain 2.6.9-55.ELsmp #1 SMP Fri Apr 20 16:36:54 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 32 kbytes maxproc 16372 ######################################## program versions used $Id: recon-all,v 1.17.2.16 2006/12/12 19:44:21 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.4 2006/01/01 21:56:44 greve Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_convert.c,v 1.121.2.1 2006/08/28 18:00:04 greve Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 $Id: talairach,v 1.2 2005/12/12 23:04:35 greve Exp $ mri_convert --version stable3 # $Id: mritotal.in,v 1.12 2004/02/12 05:55:18 rotor Exp $ Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2005-11-15 at 20:37:35 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_normalize.c,v 1.44.2.2 2006/06/28 23:38:13 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_watershed.cpp,v 1.48 2006/02/27 16:57:57 segonne Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_segment.c,v 1.28.2.1 2006/04/12 02:02:58 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_fill.c,v 1.101 2006/02/22 23:05:06 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_tessellate.c,v 1.27.2.1 2006/05/02 21:41:01 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mris_smooth.c,v 1.13.2.1 2006/05/02 21:41:01 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mris_inflate.c,v 1.30.2.1 2006/05/02 21:41:01 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mris_sphere.c,v 1.38 2006/02/08 00:17:40 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mris_fix_topology.c,v 1.41.2.1 2007/01/05 16:58:33 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mris_euler_number.c,v 1.4 2003/09/05 04:45:41 kteich Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mris_make_surfaces.c,v 1.70.2.6 2007/01/09 19:15:32 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mris_register.c,v 1.32 2005/12/07 14:22:57 fischl Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mrisp_paint.c,v 1.6 2005/02/14 04:30:19 segonne Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_label2label.c,v 1.23.2.1 2006/09/20 20:42:55 greve Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_em_register.c,v 1.52 2006/01/11 21:01:40 greve Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_ca_normalize.c,v 1.31 2005/08/15 14:14:22 fischl Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_ca_register.c,v 1.48.2.7 2006/10/24 01:48:52 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable3 $ TimeStamp: 07/06/20-13:44:29-GMT CVS: $Id: mri_ca_label.c,v 1.68.2.2 2006/08/16 00:18:42 nicks Exp $ User: richfrye Machine: localhost.localdomain Platform: Linux PlatformVersion: 2.6.9-55.ELsmp CompilerName: GCC CompilerVersion: 30400 ####################################### GCA RB_all_2006-02-15.gca GCASkull RB_all_withskull_2006-02-15.gca AvgCurvTif average.curvature.filled.buckner40.tif GCS curvature.buckner40.filled.desikan_killiany.gcs ####################################### #-------------------------------------------- #@# MotionCor Wed Jun 20 09:44:29 EDT 2007 Found 2 runs /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/001.mgz /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/002.mgz /home/richfrye/Desktop/MRI/sub089/sub089mri mri_motion_correct.fsl -o /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/rawavg.mgz -wild /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/001.mgz /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/002.mgz tmpdir is /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449 -------------------------------------------------------------- mri_motion_correct.fsl logfile is /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/rawavg.mgz.mri_motion_correct.fsl.log -------------------------------------------------------------- ----------------------------------------- Converting /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/001.mgz Wed Jun 20 09:44:45 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri mri_convert /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/001.mgz /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-1.img -odt float reading from /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/001.mgz... TR=8.55, TE=4.03, TI=0.00, flip angle=8.00 i_ras = (-0, -1, 0) j_ras = (-0, -0, -1) k_ras = (1, 0, 0) changing data type from 4 to 3 (noscale = 0)... writing to /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-1.img... Analyze Output Matrix -0.000 -0.000 0.940 -89.096; -0.938 -0.000 0.000 138.803; 0.000 -0.938 0.000 85.533; 0.000 0.000 0.000 1.000; -------------------- INFO: set hdr.hist.orient to -1 ----------------------------------------- Converting /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/002.mgz Wed Jun 20 09:44:49 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri mri_convert /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/002.mgz /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-2.img -odt float reading from /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig/002.mgz... TR=8.55, TE=4.03, TI=0.00, flip angle=8.00 i_ras = (-0, -1, 0) j_ras = (-0, -0, -1) k_ras = (1, 0, 0) changing data type from 4 to 3 (noscale = 0)... writing to /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-2.img... Analyze Output Matrix -0.000 -0.000 0.940 -89.096; -0.938 -0.000 0.000 138.803; 0.000 -0.938 0.000 85.533; 0.000 0.000 0.000 1.000; -------------------- INFO: set hdr.hist.orient to -1 ----------------------------------------- Motion Correcting /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-2.img Wed Jun 20 09:44:54 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri fsl_rigid_register -maxangle 90 -r /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-1.img -i /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-2.img -o /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/resampled.img -tmpdir /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449 -cleanup \n\n $Id: fsl_rigid_register,v 1.14 2006/02/13 20:13:19 greve Exp $ Wed Jun 20 09:44:54 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/resampled.img Reference is analyze, not converting Input is analyze, not converting Output is analyze, not converting -------------------------------------- /home/richfrye/Desktop/MRI/sub089/sub089mri calling eval flirt -in /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-2.hdr -out /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/resampled.hdr -bins 256 -cost corratio -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -interp trilinear -dof 6 -ref /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-1.hdr -omat /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/resampled.fslmat WARNING: Both reference and input images have an sform matrix set The output image will use the sform from the reference image Started at Wed Jun 20 09:44:54 EDT 2007 Ended at Wed Jun 20 09:49:17 EDT 2007 fsl_rigid_register Done To check results, run: tkmedit -f /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-1.img -aux /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/resampled.img mv /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/resampled.img /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-2.img ----------------------------------------- Averaging Wed Jun 20 09:49:17 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri inhibiting isotropic volume interpolation 1 of 2: reading /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-1.img... 2 of 2: reading /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/cor-2.img... writing to /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/avgvol.img... alignment and averaging took 0 minutes and 18 seconds. Analyze Output Matrix 0.000 0.000 0.940 -89.096; -0.938 0.000 0.000 138.803; 0.000 -0.938 0.000 85.533; 0.000 0.000 0.000 1.000; -------------------- INFO: set hdr.hist.orient to -1 ----------------------------------------- Converting Average to output Wed Jun 20 09:49:35 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri mri_convert /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/avgvol.img /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/rawavg.mgz -tr 8.5512 -te 4.0256 -TI 0 -flip_angle 0.139626 mri_convert /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/avgvol.img /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/rawavg.mgz -tr 8.5512 -te 4.0256 -TI 0 -flip_angle 0.139626 reading from /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/tmp-mri_motion_correct.fsl-20449/avgvol.img... TR=8.55, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (0, -1, 0) j_ras = (0, 0, -1) k_ras = (1, 0, 0) writing to /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/rawavg.mgz... ----------------------------------------- Started at: Wed Jun 20 09:44:33 EDT 2007 Ended at: Wed Jun 20 09:49:46 EDT 2007 mri_motion_correct.fsl: done /home/richfrye/Desktop/MRI/sub089/sub089mri mri_convert /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/rawavg.mgz /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig.mgz --conform mri_convert /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/rawavg.mgz /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig.mgz --conform reading from /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/rawavg.mgz... TR=8.55, TE=4.03, TI=0.00, flip angle=8.00 i_ras = (0, -1, 0) j_ras = (0, 0, -1) k_ras = (1, 0, 0) Original Data has (0.9375, 0.9375, 0.94) mm size and (256, 256, 181) voxels. Data is conformed to 1 mm size and 256 voxels for all directions changing data type from 3 to 0 (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig.mgz... mri_add_xform_to_header -c /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/transforms/talairach.xfm /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig.mgz /home/richfrye/Desktop/MRI/sub089/sub089mri/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Nu Intensity Correction Wed Jun 20 09:50:09 EDT 2007 mri_nu_correct.mni --i orig.mgz --o nu.mgz --n 2 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri /usr/local/freesurfer/bin//mri_nu_correct.mni --i orig.mgz --o nu.mgz --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.3.2.1 2006/11/24 20:16:38 nicks Exp $ Linux localhost.localdomain 2.6.9-55.ELsmp #1 SMP Fri Apr 20 16:36:54 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux Wed Jun 20 09:50:09 EDT 2007 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2005-11-15 at 20:37:35 tmpdir is ./tmp.mri_nu_correct.mni.20645 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.20645/nu0.mnc mri_convert orig.mgz ./tmp.mri_nu_correct.mni.20645/nu0.mnc reading from orig.mgz... TR=8.55, TE=4.03, TI=0.00, flip angle=8.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to ./tmp.mri_nu_correct.mni.20645/nu0.mnc... -------------------------------------------------------- Iteration 1 Wed Jun 20 09:50:18 EDT 2007 nu_correct -clobber ./tmp.mri_nu_correct.mni.20645/nu0.mnc ./tmp.mri_nu_correct.mni.20645/nu1.mnc [richfrye@localhost.localdomain:/home/richfrye/Desktop/MRI/sub089/sub089mri/mri/] [2007-06-20 09:50:18] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /usr/tmp/nu_correct_20711/ ./tmp.mri_nu_correct.mni.20645/nu0.mnc ./tmp.mri_nu_correct.mni.20645/nu1.imp Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Number of iterations: 50 CV of field change: 0.00148634 [richfrye@localhost.localdomain:/home/richfrye/Desktop/MRI/sub089/sub089mri/mri/] [2007-06-20 09:52:08] running: /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.20645/nu0.mnc /usr/tmp/nu_correct_20711//template.mnc Transforming slices:......................................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Transforming slices:................................................................................................................................................................................................................................................................Done -------------------------------------------------------- Iteration 2 Wed Jun 20 09:52:15 EDT 2007 nu_correct -clobber ./tmp.mri_nu_correct.mni.20645/nu1.mnc ./tmp.mri_nu_correct.mni.20645/nu2.mnc [richfrye@localhost.localdomain:/home/richfrye/Desktop/MRI/sub089/sub089mri/mri/] [2007-06-20 09:52:15] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /usr/tmp/nu_correct_21358/ ./tmp.mri_nu_correct.mni.20645/nu1.mnc ./tmp.mri_nu_correct.mni.20645/nu2.imp Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Processing:.................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Number of iterations: 28 CV of field change: 0.000998715 [richfrye@localhost.localdomain:/home/richfrye/Desktop/MRI/sub089/sub089mri/mri/] [2007-06-20 09:53:19] running: /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.20645/nu1.mnc /usr/tmp/nu_correct_21358//template.mnc Transforming slices:......................................................................................Done Not implemented yet in cache_volume_range_has_changed() Not implemented yet in cache_volume_range_has_changed() Transforming slices:................................................................................................................................................................................................................................................................Done mri_convert ./tmp.mri_nu_correct.mni.20645/nu2.mnc nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.20645/nu2.mnc nu.mgz --like orig.mgz reading from ./tmp.mri_nu_correct.mni.20645/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... Wed Jun 20 09:53:40 EDT 2007 mri_nu_correct.mni done #-------------------------------------------- #@# Talairach Wed Jun 20 09:53:40 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri talairach --i nu.mgz --xfm transforms/talairach.auto.xfm /home/richfrye/Desktop/MRI/sub089/sub089mri/mri /usr/local/freesurfer/bin//talairach --i nu.mgz --xfm transforms/talairach.auto.xfm $Id: talairach,v 1.2 2005/12/12 23:04:35 greve Exp $ Linux localhost.localdomain 2.6.9-55.ELsmp #1 SMP Fri Apr 20 16:36:54 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux Wed Jun 20 09:53:41 EDT 2007 tmpdir is transforms/tmp.talairach.21766 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_convert nu.mgz transforms/tmp.talairach.21766/src.mnc mri_convert nu.mgz transforms/tmp.talairach.21766/src.mnc reading from nu.mgz... TR=8.55, TE=4.03, TI=0.00, flip angle=8.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to transforms/tmp.talairach.21766/src.mnc... -------------------------------------------- mritotal -verbose -debug -clobber -modeldir /usr/local/freesurfer/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.21766/src.mnc transforms/talairach.auto.xfm Wed Jun 20 09:54:34 EDT 2007 talairach done #-------------------------------------------- #@# Intensity Normalization Wed Jun 20 09:54:34 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_normalize -g 1 nu.mgz T1.mgz using max gradient = 1.000 reading from nu.mgz... normalizing image... talairach transform 0.855 0.023 -0.021 -0.707; -0.028 0.778 -0.305 -59.446; 0.013 0.371 0.946 90.036; 0.000 0.000 0.000 1.000; INFO: Modifying talairach volume c_(r,a,s) based on average_305 building Voronoi diagram... performing soap bubble smoothing... 3d normalization pass 1 of 2 building Voronoi diagram... performing soap bubble smoothing... 3d normalization pass 2 of 2 building Voronoi diagram... performing soap bubble smoothing... writing output to T1.mgz 3D bias adjustment took 7 minutes and 17 seconds. white matter peak found at 110 gm peak at 62 (62), valley at 25 (25) csf peak at 31, setting threshold to 51 white matter peak found at 110 gm peak at 56 (56), valley at 24 (24) csf peak at 28, setting threshold to 46 #-------------------------------------------- #@# Skull Stripping Wed Jun 20 10:01:54 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_watershed -keep brainmask.auto.mgz brainmask.mgz brainmask.mgz -atlas T1.mgz brainmask.auto.mgz Mode: Atlas analysis ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz If this is incorrect, please exit with CTL-C *************************WATERSHED************************** preflooding height equal to 25 percent Sorting... T1-weighted MRI image modification of the preflooding height to 15 percent Count how many 110 voxels are present : 216849 Find the largest 110-component... heap usage = 219432 Kbytes. removing small segments (less than 1 percent of maxarea).done And identify it as the main brain basin...done Main component: 105660 voxels first estimation of the COG coord: x=122 y=159 z=125 r=88 first estimation of the main basin volume: 2890158 voxels global maximum in x=153, y=120, z=168, Imax=255 CSF=14, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 done Analyze main basin size= 1156184 voxels, voxel volume =1.000 = 1156184 mmm3 = 1156.184 cm3 done PostAnalyze... ambiguous basin, merged: at least 24 ambiguous voxels; size: 12289 voxels ambiguous basin, merged: at least 41 ambiguous voxels; size: 66004 voxels ambiguous basin, merged: at least 28 ambiguous voxels; size: 20303 voxels ambiguous basin, merged: at least 10 ambiguous voxels; size: 844 voxels ambiguous basin, merged: at least 13 ambiguous voxels; size: 2133 voxels ambiguous basin, merged: at least 5 ambiguous voxels; size: 96 voxels ambiguous basin, merged: at least 11 ambiguous voxels; size: 1058 voxels ambiguous basin, merged: at least 22 ambiguous voxels; size: 10177 voxels ambiguous basin, merged: at least 28 ambiguous voxels; size: 20164 voxels ***** 9 basin(s) merged in 5 iteration(s) ***** 133068 voxel(s) added to the main basin ambiguous basin, non merged: 34 ambiguous voxels; size: 53548 voxels ambiguous basin, non merged: 8 ambiguous voxels; size: 6559 voxels done ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=120,y=166, z=186, r=108108 iterations before analyzing : CSF_MAX=3, TRANSITION=2, GM_MIN=0, GM=102 after analyzing : CSF_MAX=2, TRANSITION=18, GM_MIN=27, GM=39 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...81 iterations *********************VALIDATION********************* Rigid alignment... scanning 32.00 degree nbhd, min sse = 27.11 at (32.00, -8.00, -32.00) scanning 16.00 degree nbhd, min sse = 20.11 at (16.00, -12.00, -16.00) scanning 8.00 degree nbhd, min sse = 16.96 at ( 8.00, -6.00, -8.00) scanning 4.00 degree nbhd, min sse = 15.76 at ( 4.00, 0.00, -4.00) done before rotation: sse = 40.26, sigma = 96.41 after rotation: sse = 15.76, sigma = 30.57 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 24.70, its var is 38.40 before Erosion-Dilatation 42.17% of inacurate vertices after Erosion-Dilatation 67.14% of inacurate vertices 48.37% of 'positive' inacurate vertices 51.63% of 'negative' inacurate vertices THE SEGMENTATION IS PROBABLY NOT CORRECT Scaling of atlas fields onto current surface fields Correcting the shape of the surface...50 iterations Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation... mri_strip_skull: done peeling brainComputing COG for corrected surface Initial Configuration: NRG=151845.467177, ( 4.817486 , 85.185130 , -81.401351 ) Final Minimum found: NRG=143772.253688, ( 2.755039 , 83.172085 , -82.976267 )done The shape of the surface was incorrect, hence we rigidly realign the surface with the template Rigid alignment... scanning 32.00 degree nbhd, min sse = 19.44 at (32.00, 8.00, -32.00) scanning 16.00 degree nbhd, min sse = 12.14 at (16.00, -16.00, -16.00) scanning 8.00 degree nbhd, min sse = 9.34 at ( 8.00, -8.00, -2.00) scanning 4.00 degree nbhd, min sse = 8.24 at ( 4.00, -4.00, -1.00) done before rotation: sse = 36.34, sigma = 107.02 after rotation: sse = 8.24, sigma = 14.27 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 15.15, its var is 27.06 before Erosion-Dilatation 25.46% of inacurate vertices after Erosion-Dilatation 39.80% of inacurate vertices 58.51% of 'positive' inacurate vertices 41.49% of 'negative' inacurate vertices THE SEGMENTATION IS PROBABLY NOT CORRECT 102 iterations mri_strip_skull: done peeling brain Brain Size = 6329924 voxels, voxel volume = 1.000 mm3 = 6329924 mmm3 = 6329.924 cm3 ****************************** Save...done Keeping brain edits brainmask.auto.mgz brainmask.mgz Keeping edits ... Saving kept edits to brainmask.mgz ..... #------------------------------------- #@# EM Registration Wed Jun 20 10:11:18 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_em_register -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2006-02-15.gca transforms/talairach.lta using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading '/usr/local/freesurfer/average/RB_all_2006-02-15.gca'... setting gca type = Normal gca type average std = 7.4 using min determinant for regularization = 5.5 0 singular and 1662 ill-conditioned covariance matrices regularized reading 'nu.mgz'... total sample mean = 87.9 (483 zeros) register_mri: find_optimal_transform find_optimal_transform: nsamples 2242, passno 0, spacing 8 ************************************************ First Search limited to translation only. ************************************************ Found translation: (-18.8, -50.6, -56.2): log p = -89985.1 Result so far: scale 1.000: max_log_p=-68168.0, old_max_log_p =-89985.1 (thresh=-89895.2) 1.104 0.404 0.214 -152.650; -0.317 1.079 -0.404 23.781; -0.291 0.279 0.975 -57.119; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-62684.6, old_max_log_p =-68168.0 (thresh=-68099.8) 1.161 0.510 0.076 -167.494; -0.527 1.142 -0.651 75.095; -0.221 0.509 0.829 -81.178; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-62289.0, old_max_log_p =-62684.6 (thresh=-62621.9) 1.161 0.510 0.076 -167.494; -0.587 1.277 -0.563 37.792; -0.155 0.366 0.968 -84.472; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-57470.8, old_max_log_p =-62289.0 (thresh=-62226.7) 1.276 0.422 0.278 -174.186; -0.473 1.524 -0.545 -48.902; -0.356 0.266 1.081 -62.067; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-54228.7, old_max_log_p =-57470.8 (thresh=-57413.4) 1.661 -0.174 -0.023 -49.622; -0.107 1.861 -0.636 -153.954; 0.243 0.375 1.193 -198.210; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-51018.7, old_max_log_p =-54228.7 (thresh=-54174.5) 1.804 0.744 0.019 -255.835; -0.887 2.152 -0.542 -151.473; -0.036 0.069 1.523 -163.836; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-51018.7, old_max_log_p =-51018.7 (thresh=-50967.6) 1.804 0.744 0.019 -255.835; -0.887 2.152 -0.542 -151.473; -0.036 0.069 1.523 -163.836; 0.000 0.000 0.000 1.000; dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.80413 0.74438 0.01863 -255.83484; -0.88666 2.15236 -0.54215 -151.47304; -0.03615 0.06936 1.52315 -163.83559; 0.00000 0.00000 0.00000 1.00000; nsamples 2242 Quasinewton: input matrix 1.80413 0.74438 0.01863 -255.83484; -0.88666 2.15236 -0.54215 -151.47304; -0.03615 0.06936 1.52315 -163.83559; 0.00000 0.00000 0.00000 1.00000; pass 2 through quasi-newton minimization... pass 3 through quasi-newton minimization... pass 4 through quasi-newton minimization... pass 5 through quasi-newton minimization... fp = 50514.679688, fret = 50514.679688, ftol = 0.000010, EPS = 0.000000 dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.80413 0.74438 0.01863 -255.83484; -0.88666 2.15236 -0.54215 -151.47304; -0.03615 0.06936 1.52315 -163.83559; 0.00000 0.00000 0.00000 1.00000; nsamples 242283 Quasinewton: input matrix 1.80413 0.74438 0.01863 -255.83484; -0.88666 2.15236 -0.54215 -151.47304; -0.03615 0.06936 1.52315 -163.83559; 0.00000 0.00000 0.00000 1.00000; pass 2 through quasi-newton minimization... pass 3 through quasi-newton minimization... pass 4 through quasi-newton minimization... freeing gibbs priors...done. bounding unknown intensity as < 16.0 or > 799.3 ************************************************ spacing=8, using 2242 sample points, tol=1.00e-05... ************************************************ resetting wm mean[0]: 109 --> 116 resetting gm mean[0]: 68 --> 68 input volume #1 is the most T1-like using real data threshold=17.0 using (99, 132, 166) as brain centroid... mean wm in atlas = 116, using box (80,109,150) --> (117, 154,182) to find MRI wm before smoothing, mri peak at 116 after smoothing, mri peak at 76, scaling input intensities by 1.526 scaling channel 0 by 1.52632 initial log_p = -173951.6 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** **************************************** Nine parameter search. iteration 2 nscales = 2 ... **************************************** **************************************** Nine parameter search. iteration 3 nscales = 3 ... **************************************** **************************************** Nine parameter search. iteration 4 nscales = 4 ... **************************************** **************************************** Nine parameter search. iteration 5 nscales = 5 ... **************************************** **************************************** Nine parameter search. iteration 6 nscales = 6 ... **************************************** reducing scale to 0.2500 *********************************************** Computing MAP estimate using 2242 samples... *********************************************** dfp_em_step_func: 007: -log(p) = 51018.7 after pass:transform: ( 1.80, 0.74, 0.02, -255.83) ( -0.89, 2.15, -0.54, -151.47) ( -0.04, 0.07, 1.52, -163.84) dfp_em_step_func: 008: -log(p) = 50830.7 after pass:transform: ( 1.80, 0.74, 0.02, -255.83) ( -0.89, 2.15, -0.54, -151.47) ( -0.04, 0.06, 1.52, -163.84) dfp_em_step_func: 009: -log(p) = 50738.9 after pass:transform: ( 1.80, 0.74, 0.02, -255.83) ( -0.89, 2.15, -0.54, -151.47) ( -0.04, 0.06, 1.52, -163.84) dfp_em_step_func: 010: -log(p) = 50723.4 after pass:transform: ( 1.80, 0.74, 0.02, -255.83) ( -0.89, 2.15, -0.54, -151.47) ( -0.04, 0.06, 1.52, -163.84) dfp_em_step_func: 011: -log(p) = 50514.7 after pass:transform: ( 1.80, 0.74, 0.02, -255.83) ( -0.89, 2.15, -0.54, -151.47) ( -0.04, 0.06, 1.52, -163.84) outof QuasiNewtonEMA: 013: -log(p) = 50514.7 tol 0.000010 Resulting transform: 1.804 0.744 0.019 -255.835; -0.887 2.152 -0.542 -151.473; -0.036 0.069 1.523 -163.836; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -51018.7 (old=-173951.6) transform before final EM align: 1.804 0.744 0.019 -255.835; -0.887 2.152 -0.542 -151.473; -0.036 0.069 1.523 -163.836; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 242283 samples. ************************************************** dfp_em_step_func: 012: -log(p) = 4515679.5 after pass:transform: ( 1.80, 0.74, 0.02, -255.83) ( -0.89, 2.15, -0.54, -151.47) ( -0.04, 0.07, 1.52, -163.84) dfp_em_step_func: 013: -log(p) = 4470533.5 after pass:transform: ( 1.80, 0.74, 0.01, -255.83) ( -0.88, 2.17, -0.53, -151.47) ( -0.03, 0.07, 1.53, -163.84) dfp_em_step_func: 014: -log(p) = 4460801.0 after pass:transform: ( 1.81, 0.75, 0.02, -255.83) ( -0.88, 2.17, -0.53, -151.47) ( -0.04, 0.07, 1.53, -163.84) dfp_em_step_func: 015: -log(p) = 4457007.0 after pass:transform: ( 1.81, 0.75, 0.02, -255.83) ( -0.88, 2.16, -0.53, -151.47) pass 5 through quasi-newton minimization... pass 6 through quasi-newton minimization... ( -0.04, 0.07, 1.52, -163.84) dfp_em_step_func: 016: -log(p) = 4456456.5 after pass:transform: ( 1.81, 0.75, 0.02, -255.83) ( -0.88, 2.17, -0.53, -151.47) ( -0.04, 0.07, 1.52, -163.84) dfp_em_step_func: 017: -log(p) = 4453918.0 after pass:transform: ( 1.81, 0.75, 0.02, -255.83) ( -0.88, 2.17, -0.53, -151.47) ( -0.04, 0.07, 1.52, -163.84) outof QuasiNewtonEMA: 019: -log(p) = 4453918.0 tol 0.000000 final transform: 1.809 0.747 0.019 -255.835; -0.880 2.166 -0.530 -151.473; -0.037 0.071 1.524 -163.836; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach.lta... registration took 23 minutes and 18 seconds. #-------------------------------------- #@# CA Normalize Wed Jun 20 10:34:36 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_ca_normalize -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2006-02-15.gca transforms/talairach.lta norm.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volumes reading atlas from '/usr/local/freesurfer/average/RB_all_2006-02-15.gca'... setting gca type = Normal gca type reading transform from 'transforms/talairach.lta'... INFO: compute sample coordinates transform 1.809 0.747 0.019 -255.835; -0.880 2.166 -0.530 -151.473; -0.037 0.071 1.524 -163.836; 0.000 0.000 0.000 1.000; INFO: transform used reading input volume from nu.mgz... resetting wm mean[0]: 109 --> 116 resetting gm mean[0]: 68 --> 68 input volume #1 is the most T1-like using real data threshold=17.0 using (99, 132, 166) as brain centroid... mean wm in atlas = 116, using box (80,109,150) --> (117, 154,182) to find MRI wm before smoothing, mri peak at 116 after smoothing, mri peak at 76, scaling input intensities by 1.526 scaling channel 0 by 1.52632 using 242283 sample points... finding control points in Left_Cerebral_White_Matter.... found 38929 control points for structure... bounding box (113, 189, 118) --> (155, 245, 226) Left_Cerebral_White_Matter: limiting intensities to 128.0 --> 133.0 55 of 63 (87.3%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 38531 control points for structure... bounding box (86, 183, 118) --> (130, 236, 226) Right_Cerebral_White_Matter: limiting intensities to 122.0 --> 137.0 66 of 78 (84.6%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3087 control points for structure... bounding box (117, 218, 132) --> (138, 242, 167) finding control points in Right_Cerebellum_White_Matter.... found 2900 control points for structure... bounding box (92, 217, 130) --> (119, 234, 167) finding control points in Brain_Stem.... found 3414 control points for structure... bounding box (105, 217, 153) --> (125, 245, 174) using 141 total control points for intensity normalization... bias field = 0.876 +- 0.035 0 of 18 control points discarded writing normalized volume to norm.mgz... freeing GCA...done. normalization took 2 minutes and 4 seconds. #-------------------------------------- #@# CA Reg Wed Jun 20 10:36:40 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_ca_register -align -nobigventricles -mask brainmask.mgz -T transforms/talairach.lta norm.mgz /usr/local/freesurfer/average/RB_all_2006-02-15.gca transforms/talairach.m3z renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 not handling expanded ventricles... using MR volume brainmask.mgz to mask input volume... using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/usr/local/freesurfer/average/RB_all_2006-02-15.gca'... setting gca type = Normal gca type freeing gibbs priors...done. average std[0] = 5.0 label assignment complete, 0 changed (0.00%) renormalizing by structure alignment.... renormalizing input #0 aligning Left_Pallidum... gca peak = 0.11705 (100) mri peak = 0.05768 (128) aligning Right_Pallidum... invalid transform detected (det=4.1451) gca peak = 0.13501 (106) mri peak = 0.12826 (78) aligning Right_Cerebral_White_Matter... gca peak = 0.05652 (116) mri peak = 0.04126 (80) unreasonable value (87.0), not in range [90, 130] - rejecting aligning Left_Cerebral_White_Matter... gca peak = 0.05682 (116) mri peak = 0.03031 (84) Left_Cerebral_White_Matter (2): linear fit = 0.80 x + 0.0 (6947 voxels, overlap=0.018) aligning Left_Lateral_Ventricle... gca peak = 0.05153 (25) mri peak = 0.05274 (89) CSF peak too bright - rejecting aligning Right_Lateral_Ventricle... gca peak = 0.07557 (30) mri peak = 0.03091 (86) CSF peak too bright - rejecting aligning Right_Hippocampus... gca peak = 0.14805 (66) mri peak = 0.03655 (120) overlap = 0, overlap_threshold = 0.001 insufficient overlap 0.0000 in histograms - rejecting aligning Left_Hippocampus... gca peak = 0.17297 (66) mri peak = 0.05224 (62) aligning Left_Cerebral_Cortex... gca peak = 0.05671 (68) mri peak = 0.02007 (95) uniform distribution in MR - rejecting arbitrary fit aligning Right_Cerebral_Cortex... gca peak = 0.06581 (70) mri peak = 0.02161 (78) uniform distribution in MR - rejecting arbitrary fit aligning Right_Caudate... gca peak = 0.07786 (81) mri peak = 0.03143 (102) unreasonable value (113.4), not in range [50, 100] - rejecting aligning Left_Caudate... gca peak = 0.07814 (81) mri peak = 0.04876 (116) unreasonable value (101.2), not in range [50, 100] - rejecting aligning Left_Cerebellum_Cortex... gca peak = 0.06033 (63) mri peak = 0.02635 (93) uniform distribution in MR - rejecting arbitrary fit aligning Right_Cerebellum_Cortex... gca peak = 0.05990 (64) mri peak = 0.02902 (131) uniform distribution in MR - rejecting arbitrary fit aligning Left_Cerebellum_White_Matter... gca peak = 0.09299 (92) mri peak = 0.03012 (34) Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (1551 voxels, overlap=0.054) aligning Right_Cerebellum_White_Matter... invalid transform detected (det=0.1502) gca peak = 0.08899 (93) mri peak = 0.01653 (59) uniform distribution in MR - rejecting arbitrary fit aligning Left_Amygdala... invalid transform detected (det=0.1464) gca peak = 0.13911 (71) mri peak = 0.07991 (113) aligning Right_Amygdala... gca peak = 0.15703 (65) mri peak = 0.07349 (116) overlap = 0, overlap_threshold = 0.001 insufficient overlap 0.0000 in histograms - rejecting aligning Left_Thalamus_Proper... gca peak = 0.06537 (100) mri peak = 0.02137 (89) uniform distribution in MR - rejecting arbitrary fit aligning Right_Thalamus_Proper... gca peak = 0.07019 (99) mri peak = 0.05442 (94) Right_Thalamus_Proper (49): linear fit = 0.98 x + 0.0 (490 voxels, overlap=0.430) aligning Left_Putamen... gca peak = 0.09468 (90) mri peak = 0.03149 (21) unreasonable value (119.3), not in range [60, 100] - rejecting aligning Right_Putamen... gca peak = 0.07184 (82) mri peak = 0.02569 (149) uniform distribution in MR - rejecting arbitrary fit aligning Brain_Stem... gca peak = 0.05597 (80) mri peak = 0.02557 (123) uniform distribution in MR - rejecting arbitrary fit aligning Right_VentralDC... gca peak = 0.05879 (97) mri peak = 0.03021 (84) Right_VentralDC (60): linear fit = 0.85 x + 0.0 (206 voxels, overlap=0.040) aligning Left_VentralDC... gca peak = 0.06932 (98) mri peak = 0.03769 (118) unreasonable value (112.7), not in range [80, 110] - rejecting aligning Third_Ventricle... invalid transform detected (det=0.0197) gca peak = 0.10105 (38) mri peak = 0.10023 (34) aligning Fourth_Ventricle... gca peak = 0.10426 (32) not using caudate to estimate GM means setting label Left_Cerebral_White_Matter based on Right_Cerebral_White_Matter = 0.80 x + 0 setting label Left_Cerebellum_White_Matter based on Right_Cerebellum_White_Matter = 1.02 x + 0 setting label Right_Thalamus_Proper based on Left_Thalamus_Proper = 0.98 x + 0 setting label Right_VentralDC based on Left_VentralDC = 0.85 x + 0 uniform distribution in MR - rejecting arbitrary fit estimating mean gm scale to be 1.00 x + 0.0 estimating mean wm scale to be 0.80 x + 0.0 estimating mean csf scale to be 1.00 x + 0.0 setting left cbm cortex = 1.00 x + 0.00 setting right cbm cortex = 1.00 x + 0.00 4 transforms computed rms increased - undoing step... 0000: dt=0.000000, rms=1.286 (-0.029%), neg=0, invalid=1511, LIN rms increased - undoing step... 0002: dt=0.000000, rms=1.286 (-0.030%), neg=0, invalid=1511, LIN rms increased - undoing step... 0004: dt=0.000000, rms=1.286 (-0.030%), neg=0, invalid=1511, LIN rms increased - undoing step... 0006: dt=0.000000, rms=1.286 (-0.030%), neg=0, invalid=1511, LIN rms increased - undoing step... 0008: dt=0.000000, rms=1.286 (-0.039%), neg=0, invalid=1511, LIN rms increased - undoing step... 0010: dt=0.000000, rms=1.286 (-0.047%), neg=0, invalid=1511, LIN label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.01 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=1.272, neg=0, invalid=1511 0013: dt=417.371608, rms=1.216 (4.349%), neg=0, invalid=1511 0014: dt=260.279635, rms=1.186 (2.483%), neg=0, invalid=1511 0015: dt=86.256410, rms=1.170 (1.371%), neg=0, invalid=1511 0016: dt=129.472002, rms=1.165 (0.381%), neg=0, invalid=1511 0017: dt=129.472002, rms=1.150 (1.348%), neg=0, invalid=1511 0018: dt=122.352941, rms=1.146 (0.299%), neg=0, invalid=1511 0019: dt=129.472002, rms=1.130 (1.396%), neg=0, invalid=1511 0020: dt=32.368000, rms=1.129 (0.114%), neg=0, invalid=1511 0021: dt=110.976002, rms=1.126 (0.242%), neg=0, invalid=1511 0022: dt=155.286822, rms=1.115 (1.039%), neg=0, invalid=1511 0023: dt=26.666667, rms=1.113 (0.183%), neg=0, invalid=1511 0024: dt=23.120000, rms=1.112 (0.034%), neg=0, invalid=1511 0025: dt=23.120000, rms=1.112 (0.053%), neg=0, invalid=1511 0026: dt=23.120000, rms=1.110 (0.102%), neg=0, invalid=1511 0027: dt=23.120000, rms=1.108 (0.205%), neg=0, invalid=1511 0028: dt=23.120000, rms=1.104 (0.336%), neg=0, invalid=1511 0029: dt=23.120000, rms=1.100 (0.418%), neg=0, invalid=1511 0030: dt=23.120000, rms=1.095 (0.441%), neg=0, invalid=1511 0031: dt=23.120000, rms=1.090 (0.429%), neg=0, invalid=1511 0032: dt=23.120000, rms=1.086 (0.368%), neg=0, invalid=1511 0033: dt=23.120000, rms=1.083 (0.339%), neg=0, invalid=1511 0034: dt=23.120000, rms=1.078 (0.379%), neg=0, invalid=1511 0035: dt=23.120000, rms=1.077 (0.134%), neg=0, invalid=1511 0036: dt=23.120000, rms=1.075 (0.196%), neg=0, invalid=1511 0037: dt=23.120000, rms=1.072 (0.228%), neg=0, invalid=1511 0038: dt=23.120000, rms=1.070 (0.241%), neg=0, invalid=1511 0039: dt=23.120000, rms=1.067 (0.258%), neg=0, invalid=1511 0040: dt=23.120000, rms=1.064 (0.281%), neg=0, invalid=1511 0041: dt=23.120000, rms=1.061 (0.323%), neg=0, invalid=1511 0042: dt=23.120000, rms=1.057 (0.382%), neg=0, invalid=1511 0043: dt=23.120000, rms=1.053 (0.381%), neg=0, invalid=1511 0044: dt=23.120000, rms=1.052 (0.046%), neg=0, invalid=1511 0045: dt=11.560000, rms=1.052 (0.022%), neg=0, invalid=1511 0046: dt=1.445000, rms=1.052 (0.003%), neg=0, invalid=1511 0047: dt=0.505750, rms=1.052 (0.001%), neg=0, invalid=1511 0048: dt=0.505750, rms=1.052 (0.001%), neg=0, invalid=1511 0049: dt=0.126438, rms=1.052 (0.000%), neg=0, invalid=1511 0050: dt=0.007902, rms=1.052 (0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=1.052, neg=0, invalid=1511 0051: dt=117.042802, rms=1.045 (0.654%), neg=0, invalid=1511 0052: dt=51.636364, rms=1.042 (0.294%), neg=0, invalid=1511 0053: dt=295.936004, rms=1.031 (1.045%), neg=0, invalid=1511 0054: dt=32.213333, rms=1.027 (0.423%), neg=0, invalid=1511 0055: dt=32.368000, rms=1.026 (0.038%), neg=0, invalid=1511 0056: dt=32.368000, rms=1.026 (0.058%), neg=0, invalid=1511 0057: dt=32.368000, rms=1.024 (0.123%), neg=0, invalid=1511 0058: dt=32.368000, rms=1.022 (0.184%), neg=0, invalid=1511 0059: dt=32.368000, rms=1.020 (0.241%), neg=0, invalid=1511 0060: dt=32.368000, rms=1.017 (0.279%), neg=0, invalid=1511 0061: dt=32.368000, rms=1.014 (0.302%), neg=0, invalid=1511 0062: dt=32.368000, rms=1.011 (0.315%), neg=0, invalid=1511 0063: dt=32.368000, rms=1.008 (0.308%), neg=0, invalid=1511 0064: dt=32.368000, rms=1.005 (0.304%), neg=0, invalid=1511 0065: dt=32.368000, rms=1.002 (0.300%), neg=0, invalid=1511 0066: dt=32.368000, rms=0.999 (0.294%), neg=0, invalid=1511 0067: dt=32.368000, rms=0.996 (0.278%), neg=0, invalid=1511 0068: dt=32.368000, rms=0.993 (0.268%), neg=0, invalid=1511 0069: dt=32.368000, rms=0.991 (0.258%), neg=0, invalid=1511 0070: dt=32.368000, rms=0.988 (0.245%), neg=0, invalid=1511 0071: dt=32.368000, rms=0.986 (0.235%), neg=0, invalid=1511 0072: dt=32.368000, rms=0.984 (0.248%), neg=0, invalid=1511 0073: dt=32.368000, rms=0.981 (0.253%), neg=0, invalid=1511 0074: dt=32.368000, rms=0.979 (0.235%), neg=0, invalid=1511 0075: dt=32.368000, rms=0.977 (0.219%), neg=0, invalid=1511 0076: dt=32.368000, rms=0.975 (0.208%), neg=0, invalid=1511 0077: dt=32.368000, rms=0.973 (0.212%), neg=0, invalid=1511 0078: dt=32.368000, rms=0.970 (0.221%), neg=0, invalid=1511 0079: dt=32.368000, rms=0.968 (0.203%), neg=0, invalid=1511 0080: dt=32.368000, rms=0.967 (0.191%), neg=0, invalid=1511 0081: dt=32.368000, rms=0.965 (0.169%), neg=0, invalid=1511 0082: dt=32.368000, rms=0.963 (0.161%), neg=0, invalid=1511 0083: dt=32.368000, rms=0.962 (0.161%), neg=0, invalid=1511 0084: dt=32.368000, rms=0.960 (0.160%), neg=0, invalid=1511 0085: dt=32.368000, rms=0.959 (0.141%), neg=0, invalid=1511 0086: dt=32.368000, rms=0.958 (0.118%), neg=0, invalid=1511 0087: dt=32.368000, rms=0.957 (0.095%), neg=0, invalid=1511 0088: dt=32.368000, rms=0.956 (0.084%), neg=0, invalid=1511 0089: dt=32.368000, rms=0.955 (0.079%), neg=0, invalid=1511 0090: dt=32.368000, rms=0.955 (0.084%), neg=0, invalid=1511 0091: dt=32.368000, rms=0.954 (0.096%), neg=0, invalid=1511 0092: dt=32.368000, rms=0.953 (0.104%), neg=0, invalid=1511 0093: dt=32.368000, rms=0.952 (0.104%), neg=0, invalid=1511 0094: dt=32.368000, rms=0.951 (0.113%), neg=0, invalid=1511 0095: dt=32.368000, rms=0.950 (0.101%), neg=0, invalid=1511 0096: dt=32.368000, rms=0.949 (0.105%), neg=0, invalid=1511 0097: dt=32.368000, rms=0.948 (0.108%), neg=0, invalid=1511 0098: dt=32.368000, rms=0.947 (0.103%), neg=0, invalid=1511 0099: dt=32.368000, rms=0.946 (0.099%), neg=0, invalid=1511 0100: dt=32.368000, rms=0.945 (0.094%), neg=0, invalid=1511 0101: dt=32.368000, rms=0.944 (0.089%), neg=0, invalid=1511 0102: dt=32.368000, rms=0.943 (0.090%), neg=0, invalid=1511 0103: dt=32.368000, rms=0.942 (0.094%), neg=0, invalid=1511 0104: dt=32.368000, rms=0.941 (0.093%), neg=0, invalid=1511 0105: dt=32.368000, rms=0.940 (0.089%), neg=0, invalid=1511 0106: dt=32.368000, rms=0.940 (0.082%), neg=0, invalid=1511 0107: dt=32.368000, rms=0.939 (0.074%), neg=0, invalid=1511 0108: dt=32.368000, rms=0.938 (0.070%), neg=0, invalid=1511 0109: dt=32.368000, rms=0.938 (0.060%), neg=0, invalid=1511 0110: dt=32.368000, rms=0.937 (0.058%), neg=0, invalid=1511 0111: dt=32.368000, rms=0.937 (0.050%), neg=0, invalid=1511 0112: dt=32.368000, rms=0.936 (0.052%), neg=0, invalid=1511 0113: dt=32.368000, rms=0.936 (0.055%), neg=0, invalid=1511 0114: dt=32.368000, rms=0.935 (0.057%), neg=0, invalid=1511 0115: dt=32.368000, rms=0.935 (0.075%), neg=0, invalid=1511 0116: dt=32.368000, rms=0.934 (0.083%), neg=0, invalid=1511 0117: dt=32.368000, rms=0.933 (0.090%), neg=0, invalid=1511 0118: dt=32.368000, rms=0.932 (0.092%), neg=0, invalid=1511 0119: dt=32.368000, rms=0.931 (0.090%), neg=0, invalid=1511 0120: dt=32.368000, rms=0.930 (0.085%), neg=0, invalid=1511 0121: dt=32.368000, rms=0.930 (0.079%), neg=0, invalid=1511 0122: dt=32.368000, rms=0.929 (0.078%), neg=0, invalid=1511 0123: dt=32.368000, rms=0.928 (0.072%), neg=0, invalid=1511 0124: dt=32.368000, rms=0.928 (0.067%), neg=0, invalid=1511 0125: dt=32.368000, rms=0.927 (0.064%), neg=0, invalid=1511 0126: dt=32.368000, rms=0.926 (0.066%), neg=0, invalid=1511 0127: dt=32.368000, rms=0.926 (0.073%), neg=0, invalid=1511 0128: dt=32.368000, rms=0.925 (0.074%), neg=0, invalid=1511 0129: dt=32.368000, rms=0.924 (0.074%), neg=0, invalid=1511 0130: dt=32.368000, rms=0.924 (0.075%), neg=0, invalid=1511 0131: dt=32.368000, rms=0.923 (0.076%), neg=0, invalid=1511 0132: dt=32.368000, rms=0.922 (0.080%), neg=0, invalid=1511 0133: dt=32.368000, rms=0.922 (0.082%), neg=0, invalid=1511 0134: dt=32.368000, rms=0.921 (0.081%), neg=0, invalid=1511 0135: dt=32.368000, rms=0.920 (0.076%), neg=0, invalid=1511 0136: dt=32.368000, rms=0.919 (0.073%), neg=0, invalid=1511 0137: dt=32.368000, rms=0.919 (0.067%), neg=0, invalid=1511 0138: dt=32.368000, rms=0.918 (0.062%), neg=0, invalid=1511 0139: dt=32.368000, rms=0.918 (0.057%), neg=0, invalid=1511 0140: dt=32.368000, rms=0.917 (0.056%), neg=0, invalid=1511 0141: dt=32.368000, rms=0.917 (0.056%), neg=0, invalid=1511 0142: dt=32.368000, rms=0.916 (0.052%), neg=0, invalid=1511 0143: dt=32.368000, rms=0.916 (0.045%), neg=0, invalid=1511 0144: dt=32.368000, rms=0.915 (0.042%), neg=0, invalid=1511 0145: dt=32.368000, rms=0.915 (0.049%), neg=0, invalid=1511 0146: dt=32.368000, rms=0.914 (0.051%), neg=0, invalid=1511 0147: dt=32.368000, rms=0.914 (0.054%), neg=0, invalid=1511 0148: dt=32.368000, rms=0.914 (0.051%), neg=0, invalid=1511 0149: dt=32.368000, rms=0.913 (0.051%), neg=0, invalid=1511 0150: dt=32.368000, rms=0.913 (0.048%), neg=0, invalid=1511 0151: dt=32.368000, rms=0.912 (0.046%), neg=0, invalid=1511 0152: dt=32.368000, rms=0.912 (0.045%), neg=0, invalid=1511 0153: dt=32.368000, rms=0.911 (0.049%), neg=0, invalid=1511 0154: dt=32.368000, rms=0.911 (0.045%), neg=0, invalid=1511 0155: dt=32.368000, rms=0.910 (0.050%), neg=0, invalid=1511 0156: dt=32.368000, rms=0.910 (0.042%), neg=0, invalid=1511 0157: dt=32.368000, rms=0.910 (0.038%), neg=0, invalid=1511 0158: dt=32.368000, rms=0.909 (0.040%), neg=0, invalid=1511 0159: dt=32.368000, rms=0.909 (0.039%), neg=0, invalid=1511 0160: dt=32.368000, rms=0.909 (0.037%), neg=0, invalid=1511 0161: dt=32.368000, rms=0.908 (0.040%), neg=0, invalid=1511 0162: dt=32.368000, rms=0.908 (0.037%), neg=0, invalid=1511 0163: dt=32.368000, rms=0.908 (0.034%), neg=0, invalid=1511 0164: dt=32.368000, rms=0.907 (0.033%), neg=0, invalid=1511 0165: dt=32.368000, rms=0.907 (0.034%), neg=0, invalid=1511 0166: dt=32.368000, rms=0.907 (0.032%), neg=0, invalid=1511 0167: dt=32.368000, rms=0.907 (0.030%), neg=0, invalid=1511 0168: dt=32.368000, rms=0.906 (0.027%), neg=0, invalid=1511 0169: dt=32.368000, rms=0.906 (0.030%), neg=0, invalid=1511 0170: dt=32.368000, rms=0.906 (0.029%), neg=0, invalid=1511 0171: dt=32.368000, rms=0.905 (0.030%), neg=0, invalid=1511 0172: dt=32.368000, rms=0.905 (0.037%), neg=0, invalid=1511 0173: dt=32.368000, rms=0.905 (0.037%), neg=0, invalid=1511 0174: dt=32.368000, rms=0.905 (0.033%), neg=0, invalid=1511 0175: dt=32.368000, rms=0.904 (0.036%), neg=0, invalid=1511 0176: dt=32.368000, rms=0.904 (0.032%), neg=0, invalid=1511 0177: dt=32.368000, rms=0.904 (0.035%), neg=0, invalid=1511 0178: dt=32.368000, rms=0.903 (0.037%), neg=0, invalid=1511 0179: dt=32.368000, rms=0.903 (0.030%), neg=0, invalid=1511 0180: dt=32.368000, rms=0.903 (0.027%), neg=0, invalid=1511 0181: dt=32.368000, rms=0.903 (0.020%), neg=0, invalid=1511 0182: dt=32.368000, rms=0.902 (0.024%), neg=0, invalid=1511 0183: dt=32.368000, rms=0.902 (0.024%), neg=0, invalid=1511 0184: dt=32.368000, rms=0.902 (0.027%), neg=0, invalid=1511 0185: dt=32.368000, rms=0.902 (0.024%), neg=0, invalid=1511 0186: dt=32.368000, rms=0.901 (0.024%), neg=0, invalid=1511 0187: dt=129.472002, rms=0.901 (-0.000%), neg=0, invalid=1511 setting smoothness coefficient to 0.03 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.906, neg=0, invalid=1511 0188: dt=29.931034, rms=0.903 (0.345%), neg=0, invalid=1511 0189: dt=8.769231, rms=0.902 (0.105%), neg=0, invalid=1511 0190: dt=9.072000, rms=0.899 (0.290%), neg=0, invalid=1511 0191: dt=25.920000, rms=0.896 (0.371%), neg=0, invalid=1511 0192: dt=1.296000, rms=0.896 (-0.002%), neg=0, invalid=1511 0193: dt=1.296000, rms=0.896 (0.001%), neg=0, invalid=1511 0194: dt=1.296000, rms=0.896 (0.007%), neg=0, invalid=1511 0195: dt=1.296000, rms=0.896 (0.020%), neg=0, invalid=1511 0196: dt=1.296000, rms=0.895 (0.033%), neg=0, invalid=1511 0197: dt=1.296000, rms=0.895 (0.051%), neg=0, invalid=1511 0198: dt=1.296000, rms=0.894 (0.068%), neg=0, invalid=1511 0199: dt=1.296000, rms=0.894 (0.084%), neg=0, invalid=1511 0200: dt=1.296000, rms=0.893 (0.096%), neg=0, invalid=1511 0201: dt=1.296000, rms=0.892 (0.100%), neg=0, invalid=1511 0202: dt=1.296000, rms=0.891 (0.098%), neg=0, invalid=1511 0203: dt=1.296000, rms=0.890 (0.097%), neg=0, invalid=1511 0204: dt=1.296000, rms=0.889 (0.083%), neg=0, invalid=1511 0205: dt=1.296000, rms=0.889 (0.074%), neg=0, invalid=1511 0206: dt=1.296000, rms=0.888 (0.060%), neg=0, invalid=1511 0207: dt=1.296000, rms=0.888 (0.055%), neg=0, invalid=1511 0208: dt=1.296000, rms=0.887 (0.056%), neg=0, invalid=1511 0209: dt=1.296000, rms=0.887 (0.068%), neg=0, invalid=1511 0210: dt=1.296000, rms=0.886 (0.078%), neg=0, invalid=1511 0211: dt=1.296000, rms=0.885 (0.088%), neg=0, invalid=1511 0212: dt=1.296000, rms=0.884 (0.102%), neg=0, invalid=1511 0213: dt=1.296000, rms=0.883 (0.105%), neg=0, invalid=1511 0214: dt=1.296000, rms=0.882 (0.103%), neg=0, invalid=1511 0215: dt=1.296000, rms=0.882 (0.094%), neg=0, invalid=1511 0216: dt=1.296000, rms=0.881 (0.085%), neg=0, invalid=1511 0217: dt=1.296000, rms=0.880 (0.073%), neg=0, invalid=1511 0218: dt=1.296000, rms=0.880 (0.061%), neg=0, invalid=1511 0219: dt=1.296000, rms=0.879 (0.055%), neg=0, invalid=1511 0220: dt=1.296000, rms=0.879 (0.054%), neg=0, invalid=1511 0221: dt=1.296000, rms=0.878 (0.061%), neg=0, invalid=1511 0222: dt=1.296000, rms=0.878 (0.069%), neg=0, invalid=1511 0223: dt=1.296000, rms=0.877 (0.076%), neg=0, invalid=1511 0224: dt=1.296000, rms=0.876 (0.078%), neg=0, invalid=1511 0225: dt=1.296000, rms=0.875 (0.084%), neg=0, invalid=1511 0226: dt=1.296000, rms=0.875 (0.077%), neg=0, invalid=1511 0227: dt=1.296000, rms=0.874 (0.074%), neg=0, invalid=1511 0228: dt=1.296000, rms=0.874 (0.069%), neg=0, invalid=1511 0229: dt=1.296000, rms=0.873 (0.067%), neg=0, invalid=1511 0230: dt=1.296000, rms=0.872 (0.063%), neg=0, invalid=1511 0231: dt=1.296000, rms=0.872 (0.065%), neg=0, invalid=1511 0232: dt=1.296000, rms=0.871 (0.072%), neg=0, invalid=1511 0233: dt=1.296000, rms=0.871 (0.071%), neg=0, invalid=1511 0234: dt=1.296000, rms=0.870 (0.075%), neg=0, invalid=1511 0235: dt=1.296000, rms=0.869 (0.074%), neg=0, invalid=1511 0236: dt=1.296000, rms=0.869 (0.077%), neg=0, invalid=1511 0237: dt=1.296000, rms=0.868 (0.077%), neg=0, invalid=1511 0238: dt=1.296000, rms=0.867 (0.072%), neg=0, invalid=1511 0239: dt=1.296000, rms=0.867 (0.069%), neg=0, invalid=1511 0240: dt=1.296000, rms=0.866 (0.068%), neg=0, invalid=1511 0241: dt=1.296000, rms=0.866 (0.065%), neg=0, invalid=1511 0242: dt=1.296000, rms=0.865 (0.062%), neg=0, invalid=1511 0243: dt=1.296000, rms=0.865 (0.059%), neg=0, invalid=1511 0244: dt=1.296000, rms=0.864 (0.062%), neg=0, invalid=1511 0245: dt=1.296000, rms=0.863 (0.064%), neg=0, invalid=1511 0246: dt=1.296000, rms=0.863 (0.067%), neg=0, invalid=1511 0247: dt=1.296000, rms=0.862 (0.065%), neg=0, invalid=1511 0248: dt=1.296000, rms=0.862 (0.058%), neg=0, invalid=1511 0249: dt=1.296000, rms=0.861 (0.057%), neg=0, invalid=1511 0250: dt=1.296000, rms=0.861 (0.053%), neg=0, invalid=1511 0251: dt=1.296000, rms=0.860 (0.051%), neg=0, invalid=1511 0252: dt=1.296000, rms=0.860 (0.046%), neg=0, invalid=1511 0253: dt=1.296000, rms=0.860 (0.048%), neg=0, invalid=1511 0254: dt=1.296000, rms=0.859 (0.048%), neg=0, invalid=1511 0255: dt=1.296000, rms=0.859 (0.045%), neg=0, invalid=1511 0256: dt=1.296000, rms=0.858 (0.046%), neg=0, invalid=1511 0257: dt=1.296000, rms=0.858 (0.049%), neg=0, invalid=1511 0258: dt=1.296000, rms=0.858 (0.046%), neg=0, invalid=1511 0259: dt=1.296000, rms=0.857 (0.043%), neg=0, invalid=1511 0260: dt=1.296000, rms=0.857 (0.048%), neg=0, invalid=1511 0261: dt=1.296000, rms=0.856 (0.045%), neg=0, invalid=1511 0262: dt=1.296000, rms=0.856 (0.045%), neg=0, invalid=1511 0263: dt=1.296000, rms=0.856 (0.038%), neg=0, invalid=1511 0264: dt=1.296000, rms=0.856 (0.007%), neg=0, invalid=1511 0265: dt=1.296000, rms=0.856 (0.007%), neg=0, invalid=1511 0266: dt=1.296000, rms=0.856 (0.013%), neg=0, invalid=1511 0267: dt=1.296000, rms=0.855 (0.017%), neg=0, invalid=1511 0268: dt=1.296000, rms=0.855 (0.022%), neg=0, invalid=1511 0269: dt=1.296000, rms=0.855 (0.025%), neg=0, invalid=1511 0270: dt=1.296000, rms=0.855 (0.028%), neg=0, invalid=1511 0271: dt=1.296000, rms=0.854 (0.035%), neg=0, invalid=1511 0272: dt=1.296000, rms=0.854 (0.036%), neg=0, invalid=1511 0273: dt=1.296000, rms=0.854 (0.034%), neg=0, invalid=1511 0274: dt=1.296000, rms=0.853 (0.037%), neg=0, invalid=1511 0275: dt=1.296000, rms=0.853 (0.038%), neg=0, invalid=1511 0276: dt=1.296000, rms=0.853 (0.040%), neg=0, invalid=1511 0277: dt=1.296000, rms=0.852 (0.041%), neg=0, invalid=1511 0278: dt=1.296000, rms=0.852 (0.041%), neg=0, invalid=1511 0279: dt=1.296000, rms=0.852 (0.039%), neg=0, invalid=1511 0280: dt=1.296000, rms=0.851 (0.040%), neg=0, invalid=1511 0281: dt=1.296000, rms=0.851 (0.040%), neg=0, invalid=1511 0282: dt=1.296000, rms=0.851 (0.043%), neg=0, invalid=1511 0283: dt=1.296000, rms=0.850 (0.041%), neg=0, invalid=1511 0284: dt=1.296000, rms=0.850 (0.040%), neg=0, invalid=1511 0285: dt=1.296000, rms=0.850 (0.003%), neg=0, invalid=1511 0286: dt=1.296000, rms=0.850 (0.008%), neg=0, invalid=1511 0287: dt=1.296000, rms=0.850 (0.011%), neg=0, invalid=1511 0288: dt=1.296000, rms=0.850 (0.014%), neg=0, invalid=1511 0289: dt=1.296000, rms=0.850 (0.016%), neg=0, invalid=1511 0290: dt=1.296000, rms=0.849 (0.016%), neg=0, invalid=1511 0291: dt=9.072000, rms=0.849 (0.017%), neg=0, invalid=1511 0292: dt=9.072000, rms=0.849 (0.028%), neg=0, invalid=1511 0293: dt=6.480000, rms=0.849 (0.018%), neg=0, invalid=1511 0294: dt=0.810000, rms=0.849 (0.003%), neg=0, invalid=1511 0295: dt=0.405000, rms=0.849 (0.001%), neg=0, invalid=1511 0296: dt=0.101250, rms=0.849 (0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.849, neg=0, invalid=1511 0297: dt=41.185185, rms=0.846 (0.324%), neg=0, invalid=1511 0298: dt=25.920000, rms=0.840 (0.755%), neg=0, invalid=1511 0299: dt=2.268000, rms=0.840 (0.007%), neg=0, invalid=1511 0300: dt=2.268000, rms=0.840 (0.005%), neg=0, invalid=1511 0301: dt=2.268000, rms=0.840 (0.010%), neg=0, invalid=1511 0302: dt=2.268000, rms=0.839 (0.020%), neg=0, invalid=1511 0303: dt=2.268000, rms=0.839 (0.042%), neg=0, invalid=1511 0304: dt=2.268000, rms=0.838 (0.081%), neg=0, invalid=1511 0305: dt=2.268000, rms=0.837 (0.122%), neg=0, invalid=1511 0306: dt=2.268000, rms=0.836 (0.158%), neg=0, invalid=1511 0307: dt=2.268000, rms=0.835 (0.175%), neg=0, invalid=1511 0308: dt=2.268000, rms=0.833 (0.176%), neg=0, invalid=1511 0309: dt=2.268000, rms=0.832 (0.159%), neg=0, invalid=1511 0310: dt=2.268000, rms=0.831 (0.138%), neg=0, invalid=1511 0311: dt=2.268000, rms=0.830 (0.116%), neg=0, invalid=1511 0312: dt=2.268000, rms=0.829 (0.106%), neg=0, invalid=1511 0313: dt=2.268000, rms=0.828 (0.092%), neg=0, invalid=1511 0314: dt=2.268000, rms=0.827 (0.096%), neg=0, invalid=1511 0315: dt=2.268000, rms=0.826 (0.099%), neg=0, invalid=1511 0316: dt=2.268000, rms=0.826 (0.108%), neg=0, invalid=1511 0317: dt=2.268000, rms=0.825 (0.118%), neg=0, invalid=1511 0318: dt=2.268000, rms=0.824 (0.115%), neg=0, invalid=1511 0319: dt=2.268000, rms=0.823 (0.118%), neg=0, invalid=1511 0320: dt=2.268000, rms=0.822 (0.109%), neg=0, invalid=1511 0321: dt=2.268000, rms=0.821 (0.105%), neg=0, invalid=1511 0322: dt=2.268000, rms=0.820 (0.096%), neg=0, invalid=1511 0323: dt=2.268000, rms=0.819 (0.094%), neg=0, invalid=1511 0324: dt=2.268000, rms=0.819 (0.091%), neg=0, invalid=1511 0325: dt=2.268000, rms=0.818 (0.093%), neg=0, invalid=1511 0326: dt=2.268000, rms=0.817 (0.092%), neg=0, invalid=1511 0327: dt=2.268000, rms=0.816 (0.094%), neg=0, invalid=1511 0328: dt=2.268000, rms=0.816 (0.091%), neg=0, invalid=1511 0329: dt=2.268000, rms=0.815 (0.086%), neg=0, invalid=1511 0330: dt=2.268000, rms=0.814 (0.079%), neg=0, invalid=1511 0331: dt=2.268000, rms=0.814 (0.073%), neg=0, invalid=1511 0332: dt=2.268000, rms=0.813 (0.070%), neg=0, invalid=1511 0333: dt=2.268000, rms=0.813 (0.067%), neg=0, invalid=1511 0334: dt=2.268000, rms=0.812 (0.062%), neg=0, invalid=1511 0335: dt=2.268000, rms=0.811 (0.063%), neg=0, invalid=1511 0336: dt=2.268000, rms=0.811 (0.062%), neg=0, invalid=1511 0337: dt=2.268000, rms=0.810 (0.067%), neg=0, invalid=1511 0338: dt=2.268000, rms=0.810 (0.067%), neg=0, invalid=1511 0339: dt=2.268000, rms=0.809 (0.063%), neg=0, invalid=1511 0340: dt=2.268000, rms=0.809 (0.058%), neg=0, invalid=1511 0341: dt=2.268000, rms=0.808 (0.060%), neg=0, invalid=1511 0342: dt=2.268000, rms=0.808 (0.053%), neg=0, invalid=1511 0343: dt=2.268000, rms=0.808 (0.049%), neg=0, invalid=1511 0344: dt=2.268000, rms=0.807 (0.046%), neg=0, invalid=1511 0345: dt=2.268000, rms=0.807 (0.047%), neg=0, invalid=1511 0346: dt=2.268000, rms=0.806 (0.047%), neg=0, invalid=1511 0347: dt=2.268000, rms=0.806 (0.047%), neg=0, invalid=1511 0348: dt=2.268000, rms=0.806 (0.051%), neg=0, invalid=1511 0349: dt=2.268000, rms=0.805 (0.049%), neg=0, invalid=1511 0350: dt=2.268000, rms=0.805 (0.053%), neg=0, invalid=1511 0351: dt=2.268000, rms=0.804 (0.052%), neg=0, invalid=1511 0352: dt=2.268000, rms=0.804 (0.051%), neg=0, invalid=1511 0353: dt=2.268000, rms=0.804 (0.051%), neg=0, invalid=1511 0354: dt=2.268000, rms=0.803 (0.045%), neg=0, invalid=1511 0355: dt=2.268000, rms=0.803 (0.044%), neg=0, invalid=1511 0356: dt=2.268000, rms=0.803 (0.049%), neg=0, invalid=1511 0357: dt=2.268000, rms=0.802 (0.043%), neg=0, invalid=1511 0358: dt=2.268000, rms=0.802 (0.046%), neg=0, invalid=1511 0359: dt=2.268000, rms=0.801 (0.045%), neg=0, invalid=1511 0360: dt=2.268000, rms=0.801 (0.042%), neg=0, invalid=1511 0361: dt=2.268000, rms=0.801 (0.044%), neg=0, invalid=1511 0362: dt=2.268000, rms=0.800 (0.042%), neg=0, invalid=1511 0363: dt=2.268000, rms=0.800 (0.041%), neg=0, invalid=1511 0364: dt=2.268000, rms=0.800 (0.044%), neg=0, invalid=1511 0365: dt=2.268000, rms=0.799 (0.043%), neg=0, invalid=1511 0366: dt=2.268000, rms=0.799 (0.041%), neg=0, invalid=1511 0367: dt=2.268000, rms=0.799 (0.044%), neg=0, invalid=1511 0368: dt=2.268000, rms=0.798 (0.042%), neg=0, invalid=1511 0369: dt=2.268000, rms=0.798 (0.045%), neg=0, invalid=1511 0370: dt=2.268000, rms=0.798 (0.044%), neg=0, invalid=1511 0371: dt=2.268000, rms=0.797 (0.042%), neg=0, invalid=1511 0372: dt=2.268000, rms=0.797 (0.040%), neg=0, invalid=1511 0373: dt=2.268000, rms=0.797 (0.039%), neg=0, invalid=1511 0374: dt=2.268000, rms=0.796 (0.039%), neg=0, invalid=1511 0375: dt=2.268000, rms=0.796 (0.037%), neg=0, invalid=1511 0376: dt=2.268000, rms=0.796 (0.039%), neg=0, invalid=1511 0377: dt=2.268000, rms=0.795 (0.038%), neg=0, invalid=1511 0378: dt=2.268000, rms=0.795 (0.035%), neg=0, invalid=1511 0379: dt=2.268000, rms=0.795 (0.039%), neg=0, invalid=1511 0380: dt=2.268000, rms=0.795 (0.039%), neg=0, invalid=1511 0381: dt=2.268000, rms=0.794 (0.037%), neg=0, invalid=1511 0382: dt=2.268000, rms=0.794 (0.035%), neg=0, invalid=1511 0383: dt=2.268000, rms=0.794 (0.036%), neg=0, invalid=1511 0384: dt=2.268000, rms=0.793 (0.034%), neg=0, invalid=1511 0385: dt=2.268000, rms=0.793 (0.031%), neg=0, invalid=1511 0386: dt=2.268000, rms=0.793 (0.033%), neg=0, invalid=1511 0387: dt=2.268000, rms=0.793 (0.029%), neg=0, invalid=1511 0388: dt=2.268000, rms=0.792 (0.034%), neg=0, invalid=1511 0389: dt=2.268000, rms=0.792 (0.032%), neg=0, invalid=1511 0390: dt=2.268000, rms=0.792 (0.030%), neg=0, invalid=1511 0391: dt=2.268000, rms=0.792 (0.031%), neg=0, invalid=1511 0392: dt=2.268000, rms=0.791 (0.031%), neg=0, invalid=1511 0393: dt=2.268000, rms=0.791 (0.031%), neg=0, invalid=1511 0394: dt=2.268000, rms=0.791 (0.026%), neg=0, invalid=1511 0395: dt=2.268000, rms=0.791 (0.031%), neg=0, invalid=1511 0396: dt=2.268000, rms=0.790 (0.035%), neg=0, invalid=1511 0397: dt=2.268000, rms=0.790 (0.029%), neg=0, invalid=1511 0398: dt=2.268000, rms=0.790 (0.027%), neg=0, invalid=1511 0399: dt=2.268000, rms=0.790 (0.030%), neg=0, invalid=1511 0400: dt=2.268000, rms=0.790 (0.024%), neg=0, invalid=1511 0401: dt=2.268000, rms=0.789 (0.029%), neg=0, invalid=1511 0402: dt=2.268000, rms=0.789 (0.029%), neg=0, invalid=1511 0403: dt=2.268000, rms=0.789 (0.026%), neg=0, invalid=1511 0404: dt=2.268000, rms=0.789 (0.026%), neg=0, invalid=1511 0405: dt=2.268000, rms=0.788 (0.034%), neg=0, invalid=1511 0406: dt=2.268000, rms=0.788 (0.030%), neg=0, invalid=1511 0407: dt=2.268000, rms=0.788 (0.028%), neg=0, invalid=1511 0408: dt=2.268000, rms=0.788 (0.030%), neg=0, invalid=1511 0409: dt=2.268000, rms=0.788 (0.031%), neg=0, invalid=1511 0410: dt=2.268000, rms=0.787 (0.027%), neg=0, invalid=1511 0411: dt=2.268000, rms=0.787 (0.029%), neg=0, invalid=1511 0412: dt=2.268000, rms=0.787 (0.026%), neg=0, invalid=1511 0413: dt=2.268000, rms=0.787 (0.029%), neg=0, invalid=1511 0414: dt=2.268000, rms=0.786 (0.023%), neg=0, invalid=1511 0415: dt=2.268000, rms=0.786 (0.028%), neg=0, invalid=1511 0416: dt=2.268000, rms=0.786 (0.023%), neg=0, invalid=1511 0417: dt=2.268000, rms=0.786 (0.022%), neg=0, invalid=1511 0418: dt=145.152002, rms=0.785 (0.131%), neg=0, invalid=1511 0419: dt=36.288001, rms=0.784 (0.066%), neg=0, invalid=1511 0420: dt=9.072000, rms=0.784 (0.007%), neg=0, invalid=1511 0421: dt=9.072000, rms=0.784 (0.017%), neg=0, invalid=1511 0422: dt=9.072000, rms=0.784 (0.029%), neg=0, invalid=1511 0423: dt=9.072000, rms=0.784 (0.027%), neg=0, invalid=1511 0424: dt=9.072000, rms=0.783 (0.034%), neg=0, invalid=1511 0425: dt=9.072000, rms=0.783 (0.042%), neg=0, invalid=1511 0426: dt=9.072000, rms=0.783 (0.050%), neg=0, invalid=1511 0427: dt=9.072000, rms=0.782 (0.053%), neg=0, invalid=1511 0428: dt=9.072000, rms=0.782 (0.054%), neg=0, invalid=1511 0429: dt=9.072000, rms=0.781 (0.054%), neg=0, invalid=1511 0430: dt=9.072000, rms=0.781 (0.064%), neg=0, invalid=1511 0431: dt=9.072000, rms=0.780 (0.067%), neg=0, invalid=1511 0432: dt=9.072000, rms=0.780 (0.068%), neg=0, invalid=1511 0433: dt=9.072000, rms=0.780 (0.054%), neg=0, invalid=1511 0434: dt=9.072000, rms=0.779 (0.052%), neg=0, invalid=1511 0435: dt=9.072000, rms=0.779 (0.058%), neg=0, invalid=1511 0436: dt=9.072000, rms=0.778 (0.057%), neg=0, invalid=1511 0437: dt=9.072000, rms=0.778 (0.066%), neg=0, invalid=1511 0438: dt=9.072000, rms=0.777 (0.069%), neg=0, invalid=1511 0439: dt=9.072000, rms=0.777 (0.068%), neg=0, invalid=1511 0440: dt=9.072000, rms=0.776 (0.065%), neg=0, invalid=1511 0441: dt=9.072000, rms=0.776 (0.060%), neg=0, invalid=1511 0442: dt=9.072000, rms=0.775 (0.059%), neg=0, invalid=1511 0443: dt=9.072000, rms=0.775 (0.063%), neg=0, invalid=1511 0444: dt=9.072000, rms=0.774 (0.067%), neg=0, invalid=1511 0445: dt=9.072000, rms=0.774 (0.067%), neg=0, invalid=1511 0446: dt=9.072000, rms=0.773 (0.058%), neg=0, invalid=1511 0447: dt=9.072000, rms=0.773 (0.051%), neg=0, invalid=1511 0448: dt=9.072000, rms=0.772 (0.048%), neg=0, invalid=1511 0449: dt=9.072000, rms=0.772 (0.050%), neg=0, invalid=1511 0450: dt=9.072000, rms=0.772 (0.055%), neg=0, invalid=1511 0451: dt=9.072000, rms=0.771 (0.069%), neg=0, invalid=1511 0452: dt=9.072000, rms=0.771 (0.006%), neg=0, invalid=1511 0453: dt=9.072000, rms=0.771 (0.005%), neg=0, invalid=1511 0454: dt=25.920000, rms=0.771 (0.005%), neg=0, invalid=1511 0455: dt=12.960000, rms=0.771 (0.026%), neg=0, invalid=1511 0456: dt=12.960000, rms=0.771 (0.008%), neg=0, invalid=1511 0457: dt=12.960000, rms=0.771 (0.001%), neg=0, invalid=1511 0458: dt=25.920000, rms=0.771 (0.021%), neg=0, invalid=1511 0459: dt=9.072000, rms=0.771 (0.012%), neg=0, invalid=1511 0460: dt=9.072000, rms=0.771 (-0.004%), neg=0, invalid=1511 setting smoothness coefficient to 0.12 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.793, neg=0, invalid=1511 0461: dt=2.800000, rms=0.791 (0.173%), neg=0, invalid=1511 0462: dt=0.700000, rms=0.791 (0.045%), neg=0, invalid=1511 0463: dt=0.700000, rms=0.790 (0.058%), neg=0, invalid=1511 0464: dt=0.700000, rms=0.790 (0.106%), neg=0, invalid=1511 0465: dt=0.700000, rms=0.788 (0.136%), neg=0, invalid=1511 0466: dt=0.700000, rms=0.787 (0.147%), neg=0, invalid=1511 0467: dt=0.700000, rms=0.786 (0.154%), neg=0, invalid=1511 0468: dt=0.700000, rms=0.785 (0.159%), neg=0, invalid=1511 0469: dt=0.700000, rms=0.784 (0.155%), neg=0, invalid=1511 0470: dt=0.700000, rms=0.783 (0.139%), neg=0, invalid=1511 0471: dt=0.700000, rms=0.782 (0.116%), neg=0, invalid=1511 0472: dt=0.700000, rms=0.781 (0.089%), neg=0, invalid=1511 0473: dt=0.700000, rms=0.780 (0.079%), neg=0, invalid=1511 0474: dt=0.700000, rms=0.780 (0.023%), neg=0, invalid=1511 0475: dt=0.700000, rms=0.780 (0.017%), neg=0, invalid=1511 0476: dt=2.800000, rms=0.780 (0.008%), neg=0, invalid=1511 0477: dt=0.700000, rms=0.780 (0.045%), neg=0, invalid=1511 0478: dt=0.700000, rms=0.779 (0.021%), neg=0, invalid=1511 0479: dt=0.700000, rms=0.779 (-0.018%), neg=0, invalid=1511 0480: dt=0.000000, rms=0.779 (0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.779, neg=0, invalid=1511 0481: dt=0.500000, rms=0.779 (0.008%), neg=0, invalid=1511 0482: dt=2.400000, rms=0.778 (0.205%), neg=0, invalid=1511 0483: dt=2.000000, rms=0.777 (0.139%), neg=0, invalid=1511 0484: dt=0.700000, rms=0.776 (0.026%), neg=0, invalid=1511 0485: dt=0.700000, rms=0.776 (0.074%), neg=0, invalid=1511 0486: dt=0.700000, rms=0.775 (0.122%), neg=0, invalid=1511 0487: dt=0.700000, rms=0.774 (0.143%), neg=0, invalid=1511 0488: dt=0.700000, rms=0.773 (0.150%), neg=0, invalid=1511 0489: dt=0.700000, rms=0.771 (0.161%), neg=0, invalid=1511 0490: dt=0.700000, rms=0.770 (0.167%), neg=0, invalid=1511 0491: dt=0.700000, rms=0.769 (0.179%), neg=0, invalid=1511 0492: dt=0.700000, rms=0.767 (0.183%), neg=0, invalid=1511 0493: dt=0.700000, rms=0.766 (0.185%), neg=0, invalid=1511 0494: dt=0.700000, rms=0.765 (0.183%), neg=0, invalid=1511 0495: dt=0.700000, rms=0.763 (0.178%), neg=0, invalid=1511 0496: dt=0.700000, rms=0.762 (0.174%), neg=0, invalid=1511 0497: dt=0.700000, rms=0.761 (0.161%), neg=0, invalid=1511 0498: dt=0.700000, rms=0.759 (0.160%), neg=0, invalid=1511 0499: dt=0.700000, rms=0.758 (0.164%), neg=0, invalid=1511 0500: dt=0.700000, rms=0.757 (0.169%), neg=0, invalid=1511 0501: dt=0.700000, rms=0.756 (0.166%), neg=0, invalid=1511 0502: dt=0.700000, rms=0.754 (0.158%), neg=0, invalid=1511 0503: dt=0.700000, rms=0.753 (0.148%), neg=0, invalid=1511 0504: dt=0.700000, rms=0.752 (0.136%), neg=0, invalid=1511 0505: dt=0.700000, rms=0.751 (0.136%), neg=0, invalid=1511 0506: dt=0.700000, rms=0.750 (0.134%), neg=0, invalid=1511 0507: dt=0.700000, rms=0.749 (0.133%), neg=0, invalid=1511 0508: dt=0.700000, rms=0.748 (0.134%), neg=0, invalid=1511 0509: dt=0.700000, rms=0.747 (0.129%), neg=0, invalid=1511 0510: dt=0.700000, rms=0.746 (0.121%), neg=0, invalid=1511 0511: dt=0.700000, rms=0.746 (0.111%), neg=0, invalid=1511 0512: dt=0.700000, rms=0.745 (0.108%), neg=0, invalid=1511 0513: dt=0.700000, rms=0.744 (0.108%), neg=0, invalid=1511 0514: dt=0.700000, rms=0.743 (0.100%), neg=0, invalid=1511 0515: dt=0.700000, rms=0.742 (0.099%), neg=0, invalid=1511 0516: dt=0.700000, rms=0.742 (0.096%), neg=0, invalid=1511 0517: dt=0.700000, rms=0.741 (0.092%), neg=0, invalid=1511 0518: dt=0.700000, rms=0.740 (0.092%), neg=0, invalid=1511 0519: dt=0.700000, rms=0.740 (0.086%), neg=0, invalid=1511 0520: dt=0.700000, rms=0.739 (0.081%), neg=0, invalid=1511 0521: dt=0.700000, rms=0.739 (0.006%), neg=0, invalid=1511 0522: dt=0.700000, rms=0.739 (0.012%), neg=0, invalid=1511 0523: dt=0.700000, rms=0.739 (0.017%), neg=0, invalid=1511 0524: dt=0.700000, rms=0.739 (0.024%), neg=0, invalid=1511 0525: dt=0.700000, rms=0.738 (0.029%), neg=0, invalid=1511 0526: dt=0.700000, rms=0.738 (0.034%), neg=0, invalid=1511 0527: dt=0.700000, rms=0.738 (0.037%), neg=0, invalid=1511 0528: dt=0.700000, rms=0.738 (0.040%), neg=0, invalid=1511 0529: dt=0.700000, rms=0.737 (0.047%), neg=0, invalid=1511 0530: dt=0.700000, rms=0.737 (0.044%), neg=0, invalid=1511 0531: dt=0.700000, rms=0.737 (0.046%), neg=0, invalid=1511 0532: dt=0.700000, rms=0.736 (0.048%), neg=0, invalid=1511 0533: dt=0.700000, rms=0.736 (0.049%), neg=0, invalid=1511 0534: dt=0.700000, rms=0.736 (0.048%), neg=0, invalid=1511 0535: dt=0.700000, rms=0.735 (0.050%), neg=0, invalid=1511 0536: dt=0.700000, rms=0.735 (0.045%), neg=0, invalid=1511 0537: dt=0.700000, rms=0.735 (0.051%), neg=0, invalid=1511 0538: dt=0.700000, rms=0.734 (0.048%), neg=0, invalid=1511 0539: dt=0.700000, rms=0.734 (0.043%), neg=0, invalid=1511 0540: dt=0.700000, rms=0.734 (0.043%), neg=0, invalid=1511 0541: dt=0.700000, rms=0.734 (0.003%), neg=0, invalid=1511 0542: dt=0.700000, rms=0.733 (0.003%), neg=0, invalid=1511 0543: dt=0.700000, rms=0.733 (0.005%), neg=0, invalid=1511 0544: dt=3.333333, rms=0.733 (0.017%), neg=0, invalid=1511 0545: dt=2.800000, rms=0.733 (0.022%), neg=0, invalid=1511 0546: dt=2.400000, rms=0.733 (0.019%), neg=0, invalid=1511 0547: dt=2.400000, rms=0.733 (0.016%), neg=0, invalid=1511 0548: dt=2.400000, rms=0.733 (0.036%), neg=0, invalid=1511 0549: dt=2.400000, rms=0.732 (0.056%), neg=0, invalid=1511 0550: dt=2.400000, rms=0.732 (0.070%), neg=0, invalid=1511 0551: dt=2.400000, rms=0.732 (0.016%), neg=0, invalid=1511 0552: dt=2.400000, rms=0.732 (0.011%), neg=0, invalid=1511 0553: dt=0.400000, rms=0.732 (0.002%), neg=0, invalid=1511 0554: dt=0.400000, rms=0.731 (0.003%), neg=0, invalid=1511 0555: dt=0.400000, rms=0.731 (0.006%), neg=0, invalid=1511 0556: dt=0.400000, rms=0.731 (0.010%), neg=0, invalid=1511 0557: dt=0.400000, rms=0.731 (0.012%), neg=0, invalid=1511 0558: dt=0.400000, rms=0.731 (0.014%), neg=0, invalid=1511 0559: dt=0.400000, rms=0.731 (0.017%), neg=0, invalid=1511 0560: dt=0.400000, rms=0.731 (0.016%), neg=0, invalid=1511 0561: dt=0.400000, rms=0.731 (0.015%), neg=0, invalid=1511 setting smoothness coefficient to 0.40 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.791, neg=0, invalid=1511 0562: dt=0.000000, rms=0.791 (-0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.791, neg=0, invalid=1511 0563: dt=0.000000, rms=0.791 (0.000%), neg=0, invalid=1511 setting smoothness coefficient to 1.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.905, neg=0, invalid=1511 0564: dt=0.028000, rms=0.905 (0.015%), neg=0, invalid=1511 0565: dt=0.028000, rms=0.905 (0.016%), neg=0, invalid=1511 0566: dt=0.028000, rms=0.905 (0.017%), neg=0, invalid=1511 0567: dt=0.031250, rms=0.905 (0.019%), neg=0, invalid=1511 0568: dt=0.031250, rms=0.904 (0.017%), neg=0, invalid=1511 0569: dt=0.031250, rms=0.904 (0.019%), neg=0, invalid=1511 0570: dt=0.031250, rms=0.904 (0.034%), neg=0, invalid=1511 0571: dt=0.031250, rms=0.904 (0.048%), neg=0, invalid=1511 0572: dt=0.031250, rms=0.903 (0.058%), neg=0, invalid=1511 0573: dt=0.031250, rms=0.902 (0.065%), neg=0, invalid=1511 0574: dt=0.031250, rms=0.902 (0.015%), neg=0, invalid=1511 0575: dt=0.031250, rms=0.902 (0.028%), neg=0, invalid=1511 0576: dt=0.031250, rms=0.902 (0.039%), neg=0, invalid=1511 0577: dt=0.031250, rms=0.901 (0.048%), neg=0, invalid=1511 0578: dt=0.031250, rms=0.901 (0.050%), neg=0, invalid=1511 0579: dt=0.031250, rms=0.900 (0.055%), neg=0, invalid=1511 0580: dt=0.031250, rms=0.900 (0.056%), neg=0, invalid=1511 0581: dt=0.031250, rms=0.899 (0.055%), neg=0, invalid=1511 0582: dt=0.031250, rms=0.899 (0.052%), neg=0, invalid=1511 0583: dt=0.031250, rms=0.898 (0.050%), neg=0, invalid=1511 0584: dt=0.031250, rms=0.898 (0.044%), neg=0, invalid=1511 0585: dt=0.031250, rms=0.898 (0.039%), neg=0, invalid=1511 0586: dt=0.031250, rms=0.897 (0.033%), neg=0, invalid=1511 0587: dt=0.031250, rms=0.897 (0.023%), neg=0, invalid=1511 0588: dt=0.031250, rms=0.897 (0.018%), neg=0, invalid=1511 0589: dt=0.000000, rms=0.897 (0.000%), neg=0, invalid=1511 0590: dt=0.100000, rms=0.897 (-0.003%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.897, neg=0, invalid=1511 0591: dt=0.448000, rms=0.895 (0.257%), neg=0, invalid=1511 0592: dt=0.062500, rms=0.894 (0.031%), neg=0, invalid=1511 0593: dt=0.031250, rms=0.894 (0.015%), neg=0, invalid=1511 0594: dt=0.031250, rms=0.894 (0.014%), neg=0, invalid=1511 0595: dt=0.031250, rms=0.894 (0.014%), neg=0, invalid=1511 0596: dt=0.031250, rms=0.894 (0.027%), neg=0, invalid=1511 0597: dt=0.031250, rms=0.893 (0.036%), neg=0, invalid=1511 0598: dt=0.031250, rms=0.893 (0.045%), neg=0, invalid=1511 0599: dt=0.001953, rms=0.893 (0.001%), neg=0, invalid=1511 0600: dt=0.001953, rms=0.893 (0.001%), neg=0, invalid=1511 0601: dt=0.000977, rms=0.893 (0.000%), neg=0, invalid=1511 0602: dt=0.000438, rms=0.893 (0.000%), neg=0, invalid=1511 0603: dt=0.000219, rms=0.893 (0.000%), neg=0, invalid=1511 0604: dt=0.000219, rms=0.893 (-0.000%), neg=0, invalid=1511 resetting metric properties... setting smoothness coefficient to 2.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.715, neg=0, invalid=1511 0605: dt=0.000078, rms=0.715 (0.001%), neg=0, invalid=1511 0606: dt=0.007000, rms=0.714 (0.070%), neg=0, invalid=1511 0607: dt=0.028000, rms=0.712 (0.276%), neg=0, invalid=1511 0608: dt=0.028000, rms=0.711 (0.265%), neg=0, invalid=1511 0609: dt=0.028000, rms=0.709 (0.254%), neg=0, invalid=1511 0610: dt=0.024000, rms=0.707 (0.206%), neg=0, invalid=1511 0611: dt=0.006000, rms=0.707 (0.050%), neg=0, invalid=1511 0612: dt=0.001750, rms=0.707 (0.014%), neg=0, invalid=1511 0613: dt=0.001750, rms=0.707 (0.015%), neg=0, invalid=1511 0614: dt=0.001750, rms=0.707 (0.027%), neg=0, invalid=1511 0615: dt=0.001750, rms=0.706 (0.014%), neg=0, invalid=1511 0616: dt=0.000219, rms=0.706 (0.002%), neg=0, invalid=1511 0617: dt=0.000109, rms=0.706 (0.001%), neg=0, invalid=1511 0618: dt=0.000055, rms=0.706 (0.000%), neg=0, invalid=1511 0619: dt=0.000027, rms=0.706 (0.000%), neg=0, invalid=1511 0620: dt=0.000027, rms=0.706 (0.000%), neg=0, invalid=1511 0621: dt=0.000027, rms=0.706 (0.001%), neg=0, invalid=1511 0622: dt=0.000027, rms=0.706 (0.001%), neg=0, invalid=1511 0623: dt=0.000027, rms=0.706 (0.001%), neg=0, invalid=1511 0624: dt=0.000027, rms=0.706 (0.001%), neg=0, invalid=1511 0625: dt=0.000027, rms=0.706 (0.001%), neg=0, invalid=1511 0626: dt=0.000027, rms=0.706 (0.001%), neg=0, invalid=1511 0627: dt=0.000027, rms=0.706 (0.001%), neg=0, invalid=1511 0628: dt=0.000027, rms=0.706 (0.002%), neg=0, invalid=1511 0629: dt=0.000027, rms=0.706 (0.002%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.706, neg=0, invalid=1511 0630: dt=0.020000, rms=0.705 (0.253%), neg=0, invalid=1511 0631: dt=0.001750, rms=0.704 (0.021%), neg=0, invalid=1511 0632: dt=0.000219, rms=0.704 (0.003%), neg=0, invalid=1511 0633: dt=0.000055, rms=0.704 (0.001%), neg=0, invalid=1511 0634: dt=0.000055, rms=0.704 (0.001%), neg=0, invalid=1511 0635: dt=0.000027, rms=0.704 (0.000%), neg=0, invalid=1511 label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* label assignment complete, 0 changed (0.00%) **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.01 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.704, neg=0, invalid=1511 0636: dt=0.000000, rms=0.704 (-0.046%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.704, neg=0, invalid=1511 0637: dt=0.000000, rms=0.704 (0.000%), neg=0, invalid=1511 setting smoothness coefficient to 0.03 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.704, neg=0, invalid=1511 0638: dt=0.000000, rms=0.704 (0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.704, neg=0, invalid=1511 0639: dt=0.000000, rms=0.704 (0.000%), neg=0, invalid=1511 setting smoothness coefficient to 0.12 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.704, neg=0, invalid=1511 0640: dt=0.000000, rms=0.704 (0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.704, neg=0, invalid=1511 0641: dt=0.000000, rms=0.704 (0.000%), neg=0, invalid=1511 setting smoothness coefficient to 0.40 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.704, neg=0, invalid=1511 0642: dt=0.000000, rms=0.704 (0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.704, neg=0, invalid=1511 0643: dt=0.000000, rms=0.704 (0.000%), neg=0, invalid=1511 setting smoothness coefficient to 1.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.705, neg=0, invalid=1511 0644: dt=0.112000, rms=0.701 (0.488%), neg=0, invalid=1511 0645: dt=0.028000, rms=0.700 (0.115%), neg=0, invalid=1511 0646: dt=0.020000, rms=0.700 (0.082%), neg=0, invalid=1511 0647: dt=0.080000, rms=0.697 (0.322%), neg=0, invalid=1511 0648: dt=0.007000, rms=0.697 (0.027%), neg=0, invalid=1511 0649: dt=0.007000, rms=0.697 (0.027%), neg=0, invalid=1511 0650: dt=0.007000, rms=0.697 (0.051%), neg=0, invalid=1511 0651: dt=0.007000, rms=0.696 (0.073%), neg=0, invalid=1511 0652: dt=0.007000, rms=0.696 (0.027%), neg=0, invalid=1511 0653: dt=0.007000, rms=0.696 (0.050%), neg=0, invalid=1511 0654: dt=0.007000, rms=0.696 (0.026%), neg=0, invalid=1511 0655: dt=0.007000, rms=0.695 (0.050%), neg=0, invalid=1511 0656: dt=0.007000, rms=0.695 (0.071%), neg=0, invalid=1511 0657: dt=0.007000, rms=0.694 (0.089%), neg=0, invalid=1511 0658: dt=0.007000, rms=0.694 (0.025%), neg=0, invalid=1511 0659: dt=0.007000, rms=0.694 (0.048%), neg=0, invalid=1511 0660: dt=0.007000, rms=0.693 (0.068%), neg=0, invalid=1511 0661: dt=0.007000, rms=0.692 (0.086%), neg=0, invalid=1511 0662: dt=0.007000, rms=0.692 (0.101%), neg=0, invalid=1511 0663: dt=0.007000, rms=0.692 (0.024%), neg=0, invalid=1511 0664: dt=0.007000, rms=0.691 (0.045%), neg=0, invalid=1511 0665: dt=0.007000, rms=0.691 (0.065%), neg=0, invalid=1511 0666: dt=0.007000, rms=0.690 (0.082%), neg=0, invalid=1511 0667: dt=0.007000, rms=0.690 (0.023%), neg=0, invalid=1511 0668: dt=0.007000, rms=0.690 (0.023%), neg=0, invalid=1511 0669: dt=0.001750, rms=0.690 (0.006%), neg=0, invalid=1511 0670: dt=0.000109, rms=0.690 (0.000%), neg=0, invalid=1511 0671: dt=0.000109, rms=0.690 (0.001%), neg=0, invalid=1511 0672: dt=0.000109, rms=0.690 (0.001%), neg=0, invalid=1511 0673: dt=0.000109, rms=0.690 (0.001%), neg=0, invalid=1511 0674: dt=0.000109, rms=0.690 (0.001%), neg=0, invalid=1511 0675: dt=0.000109, rms=0.690 (0.002%), neg=0, invalid=1511 0676: dt=0.000109, rms=0.690 (0.002%), neg=0, invalid=1511 0677: dt=0.000109, rms=0.690 (0.000%), neg=0, invalid=1511 0678: dt=0.000109, rms=0.690 (0.001%), neg=0, invalid=1511 0679: dt=0.000109, rms=0.690 (0.001%), neg=0, invalid=1511 0680: dt=0.000109, rms=0.690 (0.001%), neg=0, invalid=1511 0681: dt=0.000109, rms=0.690 (0.001%), neg=0, invalid=1511 0682: dt=0.000109, rms=0.690 (0.002%), neg=0, invalid=1511 0683: dt=0.000109, rms=0.690 (0.002%), neg=0, invalid=1511 0684: dt=0.000109, rms=0.690 (0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.690, neg=0, invalid=1511 0685: dt=0.112000, rms=0.687 (0.456%), neg=0, invalid=1511 0686: dt=0.028000, rms=0.686 (0.108%), neg=0, invalid=1511 0687: dt=0.024000, rms=0.685 (0.091%), neg=0, invalid=1511 0688: dt=0.024000, rms=0.685 (0.090%), neg=0, invalid=1511 0689: dt=0.007000, rms=0.684 (0.027%), neg=0, invalid=1511 0690: dt=0.007000, rms=0.684 (0.026%), neg=0, invalid=1511 0691: dt=0.007000, rms=0.684 (0.050%), neg=0, invalid=1511 0692: dt=0.007000, rms=0.683 (0.071%), neg=0, invalid=1511 0693: dt=0.007000, rms=0.683 (0.089%), neg=0, invalid=1511 0694: dt=0.007000, rms=0.682 (0.106%), neg=0, invalid=1511 0695: dt=0.007000, rms=0.681 (0.121%), neg=0, invalid=1511 0696: dt=0.007000, rms=0.680 (0.133%), neg=0, invalid=1511 0697: dt=0.007000, rms=0.679 (0.144%), neg=0, invalid=1511 0698: dt=0.007000, rms=0.678 (0.154%), neg=0, invalid=1511 0699: dt=0.007000, rms=0.677 (0.161%), neg=0, invalid=1511 0700: dt=0.007000, rms=0.676 (0.168%), neg=0, invalid=1511 0701: dt=0.007000, rms=0.675 (0.174%), neg=0, invalid=1511 0702: dt=0.007000, rms=0.674 (0.178%), neg=0, invalid=1511 0703: dt=0.007000, rms=0.673 (0.181%), neg=0, invalid=1511 0704: dt=0.007000, rms=0.671 (0.183%), neg=0, invalid=1511 0705: dt=0.007000, rms=0.670 (0.185%), neg=0, invalid=1511 0706: dt=0.007000, rms=0.669 (0.185%), neg=0, invalid=1511 0707: dt=0.007000, rms=0.668 (0.185%), neg=0, invalid=1511 0708: dt=0.007000, rms=0.667 (0.018%), neg=0, invalid=1511 0709: dt=0.007000, rms=0.667 (0.035%), neg=0, invalid=1511 0710: dt=0.007000, rms=0.667 (0.050%), neg=0, invalid=1511 0711: dt=0.007000, rms=0.666 (0.064%), neg=0, invalid=1511 0712: dt=0.007000, rms=0.666 (0.076%), neg=0, invalid=1511 0713: dt=0.007000, rms=0.666 (0.018%), neg=0, invalid=1511 0714: dt=0.007000, rms=0.666 (0.035%), neg=0, invalid=1511 0715: dt=0.001750, rms=0.666 (0.005%), neg=0, invalid=1511 0716: dt=0.000219, rms=0.666 (0.001%), neg=0, invalid=1511 0717: dt=0.028000, rms=0.665 (0.073%), neg=0, invalid=1511 0718: dt=0.028000, rms=0.665 (0.072%), neg=0, invalid=1511 0719: dt=0.024000, rms=0.664 (0.061%), neg=0, invalid=1511 0720: dt=0.024000, rms=0.664 (0.060%), neg=0, invalid=1511 0721: dt=0.007812, rms=0.664 (0.020%), neg=0, invalid=1511 0722: dt=0.001953, rms=0.664 (0.005%), neg=0, invalid=1511 0723: dt=0.000244, rms=0.664 (0.001%), neg=0, invalid=1511 0724: dt=0.000244, rms=0.664 (0.001%), neg=0, invalid=1511 0725: dt=0.000244, rms=0.664 (0.002%), neg=0, invalid=1511 0726: dt=0.000244, rms=0.664 (0.002%), neg=0, invalid=1511 0727: dt=0.000244, rms=0.664 (0.003%), neg=0, invalid=1511 0728: dt=0.000244, rms=0.664 (0.003%), neg=0, invalid=1511 0729: dt=0.000244, rms=0.664 (0.003%), neg=0, invalid=1511 0730: dt=0.000244, rms=0.664 (0.004%), neg=0, invalid=1511 0731: dt=0.000244, rms=0.664 (0.004%), neg=0, invalid=1511 0732: dt=0.000122, rms=0.664 (0.000%), neg=0, invalid=1511 0733: dt=0.028000, rms=0.663 (0.071%), neg=0, invalid=1511 0734: dt=0.028000, rms=0.663 (0.069%), neg=0, invalid=1511 0735: dt=0.028000, rms=0.662 (0.069%), neg=0, invalid=1511 0736: dt=0.007000, rms=0.662 (0.016%), neg=0, invalid=1511 0737: dt=0.007000, rms=0.662 (0.017%), neg=0, invalid=1511 0738: dt=0.007000, rms=0.662 (0.032%), neg=0, invalid=1511 0739: dt=0.007000, rms=0.661 (0.046%), neg=0, invalid=1511 0740: dt=0.007000, rms=0.661 (0.059%), neg=0, invalid=1511 0741: dt=0.007000, rms=0.661 (0.069%), neg=0, invalid=1511 0742: dt=0.007000, rms=0.660 (0.078%), neg=0, invalid=1511 0743: dt=0.007000, rms=0.659 (0.087%), neg=0, invalid=1511 0744: dt=0.007000, rms=0.659 (0.094%), neg=0, invalid=1511 0745: dt=0.007000, rms=0.658 (0.100%), neg=0, invalid=1511 0746: dt=0.007000, rms=0.657 (0.106%), neg=0, invalid=1511 0747: dt=0.007000, rms=0.657 (0.015%), neg=0, invalid=1511 0748: dt=0.007000, rms=0.657 (0.029%), neg=0, invalid=1511 0749: dt=0.007000, rms=0.657 (0.041%), neg=0, invalid=1511 0750: dt=0.007000, rms=0.657 (0.052%), neg=0, invalid=1511 0751: dt=0.007000, rms=0.656 (0.062%), neg=0, invalid=1511 0752: dt=0.007000, rms=0.656 (0.070%), neg=0, invalid=1511 0753: dt=0.001750, rms=0.656 (0.004%), neg=0, invalid=1511 0754: dt=0.001750, rms=0.656 (0.007%), neg=0, invalid=1511 0755: dt=0.001750, rms=0.656 (0.010%), neg=0, invalid=1511 0756: dt=0.001750, rms=0.655 (0.013%), neg=0, invalid=1511 0757: dt=0.001750, rms=0.655 (0.015%), neg=0, invalid=1511 0758: dt=0.001750, rms=0.655 (0.017%), neg=0, invalid=1511 0759: dt=0.001750, rms=0.655 (0.019%), neg=0, invalid=1511 0760: dt=0.001750, rms=0.655 (0.021%), neg=0, invalid=1511 0761: dt=0.001750, rms=0.655 (0.022%), neg=0, invalid=1511 0762: dt=0.001750, rms=0.655 (0.024%), neg=0, invalid=1511 0763: dt=0.001750, rms=0.655 (0.025%), neg=0, invalid=1511 0764: dt=0.001750, rms=0.654 (0.026%), neg=0, invalid=1511 0765: dt=0.001750, rms=0.654 (0.027%), neg=0, invalid=1511 0766: dt=0.001750, rms=0.654 (0.028%), neg=0, invalid=1511 0767: dt=0.001750, rms=0.654 (0.028%), neg=0, invalid=1511 0768: dt=0.001750, rms=0.654 (0.029%), neg=0, invalid=1511 0769: dt=0.001750, rms=0.653 (0.030%), neg=0, invalid=1511 0770: dt=0.001750, rms=0.653 (0.030%), neg=0, invalid=1511 0771: dt=0.001750, rms=0.653 (0.030%), neg=0, invalid=1511 0772: dt=0.001750, rms=0.653 (0.003%), neg=0, invalid=1511 0773: dt=0.001750, rms=0.653 (0.006%), neg=0, invalid=1511 0774: dt=0.001750, rms=0.653 (0.009%), neg=0, invalid=1511 0775: dt=0.001750, rms=0.653 (0.012%), neg=0, invalid=1511 0776: dt=0.000875, rms=0.653 (0.002%), neg=0, invalid=1511 0777: dt=0.320000, rms=0.649 (0.617%), neg=0, invalid=1511 0778: dt=0.024000, rms=0.649 (0.041%), neg=0, invalid=1511 0779: dt=0.012000, rms=0.648 (0.021%), neg=0, invalid=1511 0780: dt=0.012000, rms=0.648 (0.039%), neg=0, invalid=1511 0781: dt=0.006000, rms=0.648 (0.010%), neg=0, invalid=1511 0782: dt=0.006000, rms=0.648 (0.019%), neg=0, invalid=1511 0783: dt=0.006000, rms=0.648 (0.010%), neg=0, invalid=1511 0784: dt=0.011719, rms=0.648 (0.019%), neg=0, invalid=1511 0785: dt=0.007000, rms=0.648 (0.011%), neg=0, invalid=1511 0786: dt=0.007000, rms=0.648 (0.012%), neg=0, invalid=1511 0787: dt=0.007000, rms=0.647 (0.023%), neg=0, invalid=1511 0788: dt=0.007000, rms=0.647 (0.032%), neg=0, invalid=1511 0789: dt=0.007000, rms=0.647 (0.040%), neg=0, invalid=1511 0790: dt=0.007000, rms=0.647 (0.047%), neg=0, invalid=1511 0791: dt=0.007000, rms=0.646 (0.054%), neg=0, invalid=1511 0792: dt=0.007000, rms=0.646 (0.060%), neg=0, invalid=1511 0793: dt=0.007000, rms=0.646 (0.065%), neg=0, invalid=1511 0794: dt=0.007000, rms=0.645 (0.070%), neg=0, invalid=1511 0795: dt=0.007000, rms=0.645 (0.074%), neg=0, invalid=1511 0796: dt=0.007000, rms=0.644 (0.077%), neg=0, invalid=1511 0797: dt=0.007000, rms=0.644 (0.011%), neg=0, invalid=1511 0798: dt=0.007000, rms=0.644 (0.020%), neg=0, invalid=1511 0799: dt=0.007000, rms=0.644 (0.029%), neg=0, invalid=1511 0800: dt=0.007000, rms=0.644 (0.036%), neg=0, invalid=1511 0801: dt=0.007000, rms=0.643 (0.043%), neg=0, invalid=1511 0802: dt=0.007000, rms=0.643 (0.049%), neg=0, invalid=1511 0803: dt=0.007000, rms=0.643 (0.010%), neg=0, invalid=1511 0804: dt=0.007000, rms=0.643 (0.019%), neg=0, invalid=1511 0805: dt=0.007000, rms=0.643 (0.028%), neg=0, invalid=1511 0806: dt=0.007000, rms=0.642 (0.035%), neg=0, invalid=1511 0807: dt=0.007000, rms=0.642 (0.041%), neg=0, invalid=1511 0808: dt=0.007000, rms=0.642 (0.047%), neg=0, invalid=1511 0809: dt=0.007000, rms=0.641 (0.052%), neg=0, invalid=1511 0810: dt=0.007000, rms=0.641 (0.010%), neg=0, invalid=1511 0811: dt=0.000875, rms=0.641 (0.001%), neg=0, invalid=1511 0812: dt=0.000438, rms=0.641 (0.001%), neg=0, invalid=1511 0813: dt=0.000219, rms=0.641 (0.000%), neg=0, invalid=1511 0814: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0815: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0816: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0817: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0818: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0819: dt=0.000219, rms=0.641 (0.002%), neg=0, invalid=1511 0820: dt=0.000219, rms=0.641 (0.002%), neg=0, invalid=1511 0821: dt=0.000219, rms=0.641 (0.000%), neg=0, invalid=1511 0822: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0823: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0824: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0825: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0826: dt=0.000219, rms=0.641 (0.001%), neg=0, invalid=1511 0827: dt=0.000219, rms=0.641 (0.002%), neg=0, invalid=1511 0828: dt=0.000219, rms=0.641 (0.002%), neg=0, invalid=1511 0829: dt=0.000219, rms=0.641 (0.000%), neg=0, invalid=1511 resetting metric properties... setting smoothness coefficient to 2.00 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.639, neg=0, invalid=1511 0830: dt=0.000027, rms=0.639 (0.000%), neg=0, invalid=1511 0831: dt=0.007000, rms=0.639 (0.058%), neg=0, invalid=1511 0832: dt=0.007000, rms=0.639 (0.057%), neg=0, invalid=1511 0833: dt=0.007000, rms=0.638 (0.056%), neg=0, invalid=1511 0834: dt=0.001750, rms=0.638 (0.014%), neg=0, invalid=1511 0835: dt=0.001750, rms=0.638 (0.014%), neg=0, invalid=1511 0836: dt=0.001750, rms=0.638 (0.026%), neg=0, invalid=1511 0837: dt=0.000875, rms=0.638 (0.007%), neg=0, invalid=1511 0838: dt=0.000875, rms=0.638 (0.007%), neg=0, invalid=1511 0839: dt=0.000875, rms=0.638 (0.013%), neg=0, invalid=1511 0840: dt=0.000875, rms=0.638 (0.018%), neg=0, invalid=1511 0841: dt=0.000875, rms=0.638 (0.023%), neg=0, invalid=1511 0842: dt=0.000875, rms=0.637 (0.028%), neg=0, invalid=1511 0843: dt=0.000875, rms=0.637 (0.032%), neg=0, invalid=1511 0844: dt=0.000875, rms=0.637 (0.035%), neg=0, invalid=1511 0845: dt=0.000875, rms=0.637 (0.007%), neg=0, invalid=1511 0846: dt=0.000875, rms=0.637 (0.012%), neg=0, invalid=1511 0847: dt=0.000438, rms=0.637 (0.003%), neg=0, invalid=1511 0848: dt=0.005000, rms=0.637 (0.037%), neg=0, invalid=1511 0849: dt=0.001750, rms=0.637 (0.013%), neg=0, invalid=1511 0850: dt=0.000875, rms=0.637 (0.006%), neg=0, invalid=1511 0851: dt=0.000875, rms=0.636 (0.006%), neg=0, invalid=1511 0852: dt=0.000875, rms=0.636 (0.006%), neg=0, invalid=1511 0853: dt=0.000875, rms=0.636 (0.012%), neg=0, invalid=1511 0854: dt=0.000875, rms=0.636 (0.017%), neg=0, invalid=1511 0855: dt=0.000875, rms=0.636 (0.022%), neg=0, invalid=1511 0856: dt=0.000875, rms=0.636 (0.026%), neg=0, invalid=1511 0857: dt=0.000875, rms=0.636 (0.006%), neg=0, invalid=1511 0858: dt=0.000875, rms=0.636 (0.006%), neg=0, invalid=1511 0859: dt=0.000875, rms=0.636 (0.006%), neg=0, invalid=1511 0860: dt=0.000438, rms=0.636 (0.003%), neg=0, invalid=1511 0861: dt=0.000313, rms=0.636 (0.002%), neg=0, invalid=1511 0862: dt=0.000039, rms=0.636 (0.000%), neg=0, invalid=1511 0863: dt=0.000020, rms=0.636 (0.000%), neg=0, invalid=1511 0864: dt=0.000020, rms=0.636 (0.000%), neg=0, invalid=1511 0865: dt=0.000020, rms=0.636 (0.000%), neg=0, invalid=1511 0866: dt=0.000020, rms=0.636 (0.000%), neg=0, invalid=1511 0867: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0868: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0869: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0870: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0871: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0872: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0873: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0874: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0875: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0876: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0877: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0878: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0879: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0880: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0881: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0882: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0883: dt=0.000020, rms=0.636 (0.001%), neg=0, invalid=1511 0884: dt=0.000020, rms=0.636 (0.000%), neg=0, invalid=1511 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.636, neg=0, invalid=1511 0885: dt=0.001750, rms=0.636 (0.020%), neg=0, invalid=1511 0886: dt=0.006000, rms=0.635 (0.070%), neg=0, invalid=1511 0887: dt=0.001500, rms=0.635 (0.017%), neg=0, invalid=1511 0888: dt=0.000094, rms=0.635 (0.001%), neg=0, invalid=1511 0889: dt=0.000023, rms=0.635 (0.000%), neg=0, invalid=1511 0890: dt=0.000023, rms=0.635 (0.001%), neg=0, invalid=1511 0891: dt=0.000023, rms=0.635 (0.001%), neg=0, invalid=1511 0892: dt=0.000023, rms=0.635 (0.001%), neg=0, invalid=1511 0893: dt=0.000023, rms=0.635 (0.001%), neg=0, invalid=1511 0894: dt=0.000023, rms=0.635 (0.001%), neg=0, invalid=1511 0895: dt=0.000023, rms=0.635 (0.001%), neg=0, invalid=1511 0896: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0897: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0898: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0899: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0900: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0901: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0902: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0903: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0904: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0905: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0906: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0907: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0908: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0909: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0910: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0911: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0912: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0913: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0914: dt=0.000023, rms=0.635 (0.002%), neg=0, invalid=1511 0915: dt=0.000023, rms=0.635 (0.003%), neg=0, invalid=1511 0916: dt=0.000023, rms=0.635 (0.000%), neg=0, invalid=1511 0917: dt=0.000050, rms=0.635 (0.001%), neg=0, invalid=1511 0918: dt=0.007000, rms=0.634 (0.079%), neg=0, invalid=1511 0919: dt=0.000438, rms=0.634 (0.005%), neg=0, invalid=1511 0920: dt=0.000438, rms=0.634 (0.005%), neg=0, invalid=1511 0921: dt=0.000438, rms=0.634 (0.009%), neg=0, invalid=1511 0922: dt=0.000438, rms=0.634 (0.013%), neg=0, invalid=1511 0923: dt=0.000438, rms=0.634 (0.017%), neg=0, invalid=1511 0924: dt=0.000438, rms=0.634 (0.020%), neg=0, invalid=1511 0925: dt=0.000438, rms=0.634 (0.023%), neg=0, invalid=1511 0926: dt=0.000438, rms=0.633 (0.025%), neg=0, invalid=1511 0927: dt=0.000438, rms=0.633 (0.027%), neg=0, invalid=1511 0928: dt=0.000438, rms=0.633 (0.029%), neg=0, invalid=1511 0929: dt=0.000438, rms=0.633 (0.031%), neg=0, invalid=1511 0930: dt=0.000438, rms=0.633 (0.033%), neg=0, invalid=1511 0931: dt=0.000438, rms=0.632 (0.034%), neg=0, invalid=1511 0932: dt=0.000438, rms=0.632 (0.035%), neg=0, invalid=1511 0933: dt=0.000438, rms=0.632 (0.036%), neg=0, invalid=1511 0934: dt=0.000438, rms=0.632 (0.005%), neg=0, invalid=1511 0935: dt=0.000438, rms=0.632 (0.009%), neg=0, invalid=1511 0936: dt=0.000438, rms=0.632 (0.012%), neg=0, invalid=1511 0937: dt=0.000219, rms=0.632 (0.002%), neg=0, invalid=1511 0938: dt=0.007000, rms=0.631 (0.072%), neg=0, invalid=1511 0939: dt=0.000438, rms=0.631 (0.004%), neg=0, invalid=1511 0940: dt=0.000438, rms=0.631 (0.004%), neg=0, invalid=1511 0941: dt=0.000438, rms=0.631 (0.008%), neg=0, invalid=1511 0942: dt=0.000438, rms=0.631 (0.012%), neg=0, invalid=1511 0943: dt=0.000438, rms=0.631 (0.004%), neg=0, invalid=1511 0944: dt=0.000438, rms=0.631 (0.008%), neg=0, invalid=1511 0945: dt=0.000438, rms=0.631 (0.012%), neg=0, invalid=1511 0946: dt=0.000438, rms=0.631 (0.015%), neg=0, invalid=1511 0947: dt=0.000438, rms=0.631 (0.004%), neg=0, invalid=1511 0948: dt=0.000438, rms=0.631 (0.004%), neg=0, invalid=1511 0949: dt=0.001500, rms=0.631 (0.015%), neg=0, invalid=1511 0950: dt=0.001500, rms=0.631 (0.015%), neg=0, invalid=1511 writing output transformation to transforms/talairach.m3z... CA registration took 13 hours, 46 minutes and 11 seconds. #-------------------------------------- #@# CA Reg Inv Thu Jun 21 00:22:52 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_ca_register -invert-and-save transforms/talairach.m3z Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z gcam->type = vox reading labels out of gcam file... Inverting GCAM Saving inverse #-------------------------------------- #@# Remove Neck Thu Jun 21 00:29:50 EDT 2007 mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2006-02-15.gca nu_noneck.mgz erasing everything more than 25 mm from possible brain reading atlas '/usr/local/freesurfer/average/RB_all_2006-02-15.gca'... setting gca type = Normal gca type reading input volume 'nu.mgz'... reading transform 'transforms/talairach.m3z'... gcam->type = vox reading labels out of gcam file... removing structures at least 25 mm from brain... 15239279 nonbrain voxels erased writing output to nu_noneck.mgz... nonbrain removal took 7 minutes and 16 seconds. #-------------------------------------- #@# SkullLTA Thu Jun 21 00:37:06 EDT 2007 mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /usr/local/freesurfer/average/RB_all_withskull_2006-02-15.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2006-02-15.gca'... setting gca type = Normal gca type average std = 23.5 using min determinant for regularization = 55.2 0 singular and 6473 ill-conditioned covariance matrices regularized reading 'nu_noneck.mgz'... total sample mean = 91.1 (1456 zeros) register_mri: find_optimal_transform find_optimal_transform: nsamples 3516, passno 0, spacing 8 Result so far: scale 1.000: max_log_p=-29219.3, old_max_log_p =-2022144.0 (thresh=-2020121.9) 1.323 1.989 0.141 -485.651; -1.171 1.193 -1.070 183.653; -1.188 0.435 1.169 -21.439; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-26576.7, old_max_log_p =-29219.3 (thresh=-29190.1) 0.699 2.727 0.174 -553.854; -1.213 0.514 -1.011 324.110; -1.800 -0.155 1.297 160.903; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-24002.4, old_max_log_p =-26576.7 (thresh=-26550.1) -0.257 2.641 0.523 -469.196; -1.086 0.345 -1.493 426.564; -2.483 -1.400 1.151 529.027; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-23359.3, old_max_log_p =-24002.4 (thresh=-23978.4) -0.289 2.971 0.589 -543.562; -1.598 0.165 -1.483 534.785; -2.759 -1.715 1.611 558.150; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-22405.8, old_max_log_p =-23359.3 (thresh=-23336.0) 0.914 3.415 1.087 -894.601; -1.822 1.660 -1.372 243.436; -3.239 -1.562 2.069 505.402; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-21265.5, old_max_log_p =-22405.8 (thresh=-22383.4) 0.400 3.974 0.708 -888.302; -1.833 1.034 -2.260 526.747; -4.167 -1.740 2.180 644.850; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-21145.7, old_max_log_p =-21265.5 (thresh=-21244.2) -0.195 3.923 1.068 -869.113; -1.833 1.034 -2.260 526.747; -4.182 -2.276 2.060 780.738; 0.000 0.000 0.000 1.000; Result so far: scale 1.000: max_log_p=-21145.7, old_max_log_p =-21145.7 (thresh=-21124.5) -0.195 3.923 1.068 -869.113; -1.833 1.034 -2.260 526.747; -4.182 -2.276 2.060 780.738; 0.000 0.000 0.000 1.000; dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix -0.19499 3.92350 1.06768 -869.11322; -1.83280 1.03418 -2.25956 526.74725; -4.18182 -2.27635 2.06046 780.73822; 0.00000 0.00000 0.00000 1.00000; nsamples 3516 Quasinewton: input matrix -0.19499 3.92350 1.06768 -869.11322; -1.83280 1.03418 -2.25956 526.74725; -4.18182 -2.27635 2.06046 780.73822; 0.00000 0.00000 0.00000 1.00000; fp = 21145.679688, fret = 21145.679688, ftol = 0.000010, EPS = 0.000000 dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix -0.19499 3.92350 1.06768 -869.11322; -1.83280 1.03418 -2.25956 526.74725; -4.18182 -2.27635 2.06046 780.73822; 0.00000 0.00000 0.00000 1.00000; nsamples 385836 Quasinewton: input matrix -0.19499 3.92350 1.06768 -869.11322; -1.83280 1.03418 -2.25956 526.74725; -4.18182 -2.27635 2.06046 780.73822; 0.00000 0.00000 0.00000 1.00000; pass 2 through quasi-newton minimization... pass 3 through quasi-newton minimization... fp = 2757868.250000, fret = 2757868.250000, ftol = 0.000000, EPS = 0.000000 freeing gibbs priors...done. bounding unknown intensity as < 20.7 or > 1320.6 ************************************************ spacing=8, using 3516 sample points, tol=1.00e-05... ************************************************ resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 73 --> 73 input volume #1 is the most T1-like using real data threshold=10.0 using (98, 192, 170) as brain centroid... mean wm in atlas = 126, using box (82,180,152) --> (113, 203,188) to find MRI wm before smoothing, mri peak at 66 after smoothing, mri peak at 67, scaling input intensities by 1.881 scaling channel 0 by 1.8806 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** **************************************** Nine parameter search. iteration 2 nscales = 2 ... **************************************** **************************************** Nine parameter search. iteration 3 nscales = 3 ... **************************************** **************************************** Nine parameter search. iteration 4 nscales = 4 ... **************************************** **************************************** Nine parameter search. iteration 5 nscales = 5 ... **************************************** **************************************** Nine parameter search. iteration 6 nscales = 6 ... **************************************** **************************************** Nine parameter search. iteration 7 nscales = 7 ... **************************************** reducing scale to 0.2500 *********************************************** Computing MAP estimate using 3516 samples... *********************************************** dfp_em_step_func: 008: -log(p) = 21145.7 after pass:transform: ( -0.19, 3.92, 1.07, -869.11) ( -1.83, 1.03, -2.26, 526.75) ( -4.18, -2.28, 2.06, 780.74) outof QuasiNewtonEMA: 010: -log(p) = 21145.7 tol 0.000010 Resulting transform: -0.195 3.923 1.068 -869.113; -1.833 1.034 -2.260 526.747; -4.182 -2.276 2.060 780.738; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -21145.7 (old=-2022144.0) transform before final EM align: -0.195 3.923 1.068 -869.113; -1.833 1.034 -2.260 526.747; -4.182 -2.276 2.060 780.738; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 385836 samples. ************************************************** dfp_em_step_func: 009: -log(p) = 2757924.8 after pass:transform: ( -0.19, 3.92, 1.07, -869.11) ( -1.83, 1.03, -2.26, 526.75) ( -4.18, -2.28, 2.06, 780.74) dfp_em_step_func: 010: -log(p) = 2757880.2 after pass:transform: ( -0.19, 3.92, 1.07, -869.11) ( -1.83, 1.03, -2.26, 526.75) ( -4.18, -2.28, 2.06, 780.74) dfp_em_step_func: 011: -log(p) = 2757868.2 after pass:transform: ( -0.19, 3.92, 1.07, -869.11) ( -1.83, 1.03, -2.26, 526.75) ( -4.18, -2.28, 2.06, 780.74) outof QuasiNewtonEMA: 013: -log(p) = 2757868.2 tol 0.000000 final transform: -0.195 3.924 1.068 -869.113; -1.833 1.034 -2.260 526.747; -4.182 -2.276 2.060 780.738; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull.lta... registration took 29 minutes and 46 seconds. #-------------------------------------- #@# SubCort Seg Thu Jun 21 01:06:52 EDT 2007 mri_ca_label -align -nobigventricles norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2006-02-15.gca aseg.auto.mgz renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 not handling expanded ventricles... reading 1 input volumes... reading classifier array from /usr/local/freesurfer/average/RB_all_2006-02-15.gca... setting gca type = Normal gca type reading input volume from norm.mgz... average std[0] = 7.4 reading transform from transforms/talairach.m3z... gcam->type = vox reading labels out of gcam file... Atlas used for the 3D morph was /usr/local/freesurfer/average/RB_all_2006-02-15.gca average std = 7.4 using min determinant for regularization = 5.5 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.13482 (104) mri peak = 0.05088 (113) Left_Pallidum (13): linear fit = 1.08 x + 0.0 (715 voxels, overlap=0.510) gca peak = 0.19307 (105) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.07702 (114) mri peak = 0.03220 (96) Right_Cerebral_White_Matter (41): linear fit = 0.95 x + 0.0 (1782 voxels, overlap=0.017) gca peak = 0.07016 (114) mri peak = 0.03119 (95) Left_Cerebral_White_Matter (2): linear fit = 0.90 x + 0.0 (9356 voxels, overlap=0.046) gca peak = 0.10443 (32) mri peak = 0.05504 (107) CSF peak too bright - rejecting gca peak = 0.11491 (25) mri peak = 0.07306 (51) gca peak = 0.27319 (66) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.29477 (66) mri peak = 0.04022 (93) gca peak = 0.06920 (68) mri peak = 0.04607 (34) unreasonable value (27.2), not in range [40, 95] - rejecting gca peak = 0.08287 (69) mri peak = 0.02440 (34) unreasonable value (29.3), not in range [40, 95] - rejecting gca peak = 0.22476 (80) mri peak = 0.13063 (61) gca peak = 0.18589 (81) mri peak = 0.04550 (107) unreasonable value (105.3), not in range [50, 100] - rejecting gca peak = 0.08091 (61) mri peak = 0.02814 (44) Left_Cerebellum_Cortex (8): linear fit = 0.68 x + 0.0 (844 voxels, overlap=0.011) gca peak = 0.10638 (61) mri peak = 0.03403 (221) Right_Cerebellum_Cortex (47): linear fit = 0.98 x + 0.0 (1446 voxels, overlap=0.000) gca peak = 0.15522 (88) mri peak = 0.07889 (91) Left_Cerebellum_White_Matter (7): linear fit = 1.05 x + 0.0 (307 voxels, overlap=0.746) gca peak = 0.12507 (87) mri peak = 0.06386 (222) Right_Cerebellum_White_Matter (46): linear fit = 2.50 x + 0.0 (831 voxels, overlap=0.000) gca peak = 0.25800 (69) mri peak = 0.05479 (103) gca peak = 0.29193 (67) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.11200 (101) mri peak = 0.05132 (94) Left_Thalamus_Proper (10): linear fit = 0.93 x + 0.0 (2038 voxels, overlap=0.390) gca peak = 0.10010 (92) mri peak = 0.04324 (94) Right_Thalamus_Proper (49): linear fit = 1.02 x + 0.0 (755 voxels, overlap=0.579) gca peak = 0.07167 (89) mri peak = 0.03957 (119) unreasonable value (117.9), not in range [60, 100] - rejecting gca peak = 0.09514 (89) mri peak = 0.40000 (95) gca peak = 0.07535 (89) mri peak = 0.03944 (82) Brain_Stem (16): linear fit = 0.95 x + 0.0 (1746 voxels, overlap=0.174) gca peak = 0.11225 (101) mri peak = 0.10820 (69) gca peak = 0.15721 (97) mri peak = 0.04031 (62) unreasonable value (67.9), not in range [80, 110] - rejecting gca peak = 0.13106 (39) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.19587 (25) mri peak = 0.13559 (32) not using caudate to estimate GM means setting label Left_Cerebellum_White_Matter based on Right_Cerebellum_White_Matter = 1.05 x + 0 setting label Left_Pallidum based on Right_Pallidum = 1.08 x + 0 estimating mean gm scale to be 1.00 x + 0.0 estimating mean wm scale to be 0.92 x + 0.0 estimating mean csf scale to be 1.00 x + 0.0 4879 gm and wm labels changed (%27 to gray, %73 to white out of all changed labels) 151 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 21996 changed. image ll: -20.834, PF=1.000 pass 2: 4522 changed. 4315 border labels changed to MLE ... writing labeled volume to aseg.auto.mgz... auto-labeling took 29 minutes and 15 seconds. cp aseg.auto.mgz aseg.mgz #-------------------------------------------- #@# ASeg Stats Thu Jun 21 01:36:09 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --ctab-default --excludeid 0 --brain-vol-from-seg --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --subject sub089mri Using defalt ctab /usr/local/freesurfer/FreeSurferColorLUT.txt atlas_icv = 34931.5 Loading mri/aseg.mgz Loading mri/norm.mgz Loading mri/norm.mgz Loading mri/brainmask.mgz # nbrainmaskvoxels 2981094 # brainmaskvolume 2981094.0 # nbrainsegvoxels 173772 # brainsegvolume 173772.0 Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 686 segmentations Computing statistics for each segmentation 1 1 Left-Cerebral-Exterior 0 2 2 Left-Cerebral-White-Matter 42991 42991 3 3 Left-Cerebral-Cortex 29681 29681 4 4 Left-Lateral-Ventricle 1255 1255 5 5 Left-Inf-Lat-Vent 85 85 6 6 Left-Cerebellum-Exterior 0 7 7 Left-Cerebellum-White-Matter 2796 2796 8 8 Left-Cerebellum-Cortex 3708 3708 9 9 Left-Thalamus 0 10 10 Left-Thalamus-Proper 4596 4596 11 11 Left-Caudate 1730 1730 12 12 Left-Putamen 3657 3657 13 13 Left-Pallidum 3093 3093 14 14 3rd-Ventricle 289 289 15 15 4th-Ventricle 398 398 16 16 Brain-Stem 4401 4401 17 17 Left-Hippocampus 715 715 18 18 Left-Amygdala 147 147 19 19 Left-Insula 0 20 20 Left-Operculum 0 21 21 Line-1 0 22 22 Line-2 0 23 23 Line-3 0 24 24 CSF 289 289 25 25 Left-Lesion 0 26 26 Left-Accumbens-area 85 85 27 27 Left-Substancia-Nigra 0 28 28 Left-VentralDC 2266 2266 29 29 Left-undetermined 0 30 30 Left-vessel 143 143 31 31 Left-choroid-plexus 0 32 32 Left-F3orb 0 33 33 Left-lOg 0 34 34 Left-aOg 0 35 35 Left-mOg 0 36 36 Left-pOg 0 37 37 Left-Stellate 0 38 38 Left-Porg 0 39 39 Left-Aorg 0 40 40 Right-Cerebral-Exterior 0 41 41 Right-Cerebral-White-Matter 19922 19922 42 42 Right-Cerebral-Cortex 25978 25978 43 43 Right-Lateral-Ventricle 805 805 44 44 Right-Inf-Lat-Vent 13 13 45 45 Right-Cerebellum-Exterior 0 46 46 Right-Cerebellum-White-Matter 2822 2822 47 47 Right-Cerebellum-Cortex 7157 7157 48 48 Right-Thalamus 0 49 49 Right-Thalamus-Proper 2639 2639 50 50 Right-Caudate 463 463 51 51 Right-Putamen 681 681 52 52 Right-Pallidum 94 94 53 53 Right-Hippocampus 402 402 54 54 Right-Amygdala 40 40 55 55 Right-Insula 0 56 56 Right-Operculum 0 57 57 Right-Lesion 0 58 58 Right-Accumbens-area 15 15 59 59 Right-Substancia-Nigra 0 60 60 Right-VentralDC 472 472 61 61 Right-undetermined 0 62 62 Right-vessel 16 16 63 63 Right-choroid-plexus 0 64 64 Right-F3orb 0 65 65 Right-lOg 0 66 66 Right-aOg 0 67 67 Right-mOg 0 68 68 Right-pOg 0 69 69 Right-Stellate 0 70 70 Right-Porg 0 71 71 Right-Aorg 0 72 72 5th-Ventricle 8 8 73 73 Left-Interior 0 74 74 Right-Interior 7 7 75 75 Left-Lateral-Ventricles 0 76 76 Right-Lateral-Ventricles 0 77 77 WM-hypointensities 0 78 78 Left-WM-hypointensities 4331 4331 79 79 Right-WM-hypointensities 2107 2107 80 80 non-WM-hypointensities 0 81 81 Left-non-WM-hypointensities 151 151 82 82 Right-non-WM-hypointensities 27 27 83 83 Left-F1 0 84 84 Right-F1 0 85 85 Optic-Chiasm 512 512 86 86 Corpus_Callosum 0 87 96 Left-Amygdala-Anterior 0 88 97 Right-Amygdala-Anterior 0 89 98 Dura 0 90 100 Left-wm-intensity-abnormality 0 91 101 Left-caudate-intensity-abnormality 0 92 102 Left-putamen-intensity-abnormality 0 93 103 Left-accumbens-intensity-abnormality 0 94 104 Left-pallidum-intensity-abnormality 0 95 105 Left-amygdala-intensity-abnormality 0 96 106 Left-hippocampus-intensity-abnormality 0 97 107 Left-thalamus-intensity-abnormality 0 98 108 Left-VDC-intensity-abnormality 0 99 109 Right-wm-intensity-abnormality 0 100 110 Right-caudate-intensity-abnormality 0 101 111 Right-putamen-intensity-abnormality 0 102 112 Right-accumbens-intensity-abnormality 0 103 113 Right-pallidum-intensity-abnormality 0 104 114 Right-amygdala-intensity-abnormality 0 105 115 Right-hippocampus-intensity-abnormality 0 106 116 Right-thalamus-intensity-abnormality 0 107 117 Right-VDC-intensity-abnormality 0 108 118 Epidermis 0 109 119 Conn-Tissue 0 110 120 SC-Fat/Muscle 0 111 121 Cranium 0 112 122 CSF-SA 0 113 123 Muscle 0 114 124 Ear 0 115 125 Adipose 0 116 126 Spinal-Cord 0 117 127 Soft-Tissue 0 118 128 Nerve 0 119 129 Bone 0 120 130 Air 0 121 131 Orbital-Fat 0 122 132 Tongue 0 123 133 Nasal-Structures 0 124 134 Globe 0 125 135 Teeth 0 126 136 Left-Caudate/Putamen 0 127 137 Right-Caudate/Putamen 0 128 138 Left-Claustrum 0 129 139 Right-Claustrum 0 130 140 Cornea 0 131 142 Diploe 0 132 143 Vitreous-Humor 0 133 144 Lens 0 134 145 Aqueous-Humor 0 135 146 Outer-Table 0 136 147 Inner-Table 0 137 148 Periosteum 0 138 149 Endosteum 0 139 150 R/C/S 0 140 151 Iris 0 141 152 SC-Adipose/Muscle 0 142 153 SC-Tissue 0 143 154 Orbital-Adipose 0 144 193 Left-hippocampal_fissure 0 145 194 Left-CADG-head 0 146 195 Left-subiculum 0 147 196 Left-fimbria 0 148 197 Right-hippocampal_fissure 0 149 198 Right-CADG-head 0 150 199 Right-subiculum 0 151 200 Right-fimbria 0 152 201 alveus 0 153 202 perforant_pathway 0 154 203 parasubiculum 0 155 204 presubiculum 0 156 205 subiculum 0 157 206 CA1 0 158 207 CA2 0 159 208 CA3 0 160 209 CA4 0 161 210 GC-DG 0 162 211 HATA 0 163 212 fimbria 0 164 213 lateral_ventricle 0 165 214 molecular_layer_HP 0 166 215 hippocampal_fissure 0 167 216 entorhinal_cortex 0 168 217 molecular_layer_subiculum 0 169 218 Amygdala 0 170 219 Cerebral_White_Matter 0 171 220 Cerebral_Cortex 0 172 221 Inf_Lat_Vent 0 173 222 Ectorhinal 0 174 222 Perirhinal 0 175 223 Cerebral_White_Matter_Edge 0 176 224 fMRI_Background 0 177 331 Aorta 0 178 332 Left-Common-IliacA 0 179 333 Right-Common-IliacA 0 180 334 Left-External-IliacA 0 181 335 Right-External-IliacA 0 182 336 Left-Internal-IliacA 0 183 337 Right-Internal-IliacA 0 184 338 Left-Lateral-SacralA 0 185 339 Right-Lateral-SacralA 0 186 340 Left-ObturatorA 0 187 341 Right-ObturatorA 0 188 342 Left-Internal-PudendalA 0 189 343 Right-Internal-PudendalA 0 190 344 Left-UmbilicalA 0 191 345 Right-UmbilicalA 0 192 346 Left-Inf-RectalA 0 193 347 Right-Inf-RectalA 0 194 348 Left-Common-IliacV 0 195 349 Right-Common-IliacV 0 196 350 Left-External-IliacV 0 197 351 Right-External-IliacV 0 198 352 Left-Internal-IliacV 0 199 353 Right-Internal-IliacV 0 200 354 Left-ObturatorV 0 201 355 Right-ObturatorV 0 202 356 Left-Internal-PudendalV 0 203 357 Right-Internal-PudendalV 0 204 358 Pos-Lymph 0 205 359 Neg-Lymph 0 206 400 V1 0 207 401 V2 0 208 402 BA44 0 209 403 BA45 0 210 404 BA4a 0 211 405 BA4p 0 212 406 BA6 0 213 407 BA2 0 214 408 BAun1 0 215 409 BAun2 0 216 1000 ctx-lh-unknown 0 217 1001 ctx-lh-bankssts 0 218 1002 ctx-lh-caudalanteriorcingulate 0 219 1003 ctx-lh-caudalmiddlefrontal 0 220 1004 ctx-lh-corpuscallosum 0 221 1005 ctx-lh-cuneus 0 222 1006 ctx-lh-entorhinal 0 223 1007 ctx-lh-fusiform 0 224 1008 ctx-lh-inferiorparietal 0 225 1009 ctx-lh-inferiortemporal 0 226 1010 ctx-lh-isthmuscingulate 0 227 1011 ctx-lh-lateraloccipital 0 228 1012 ctx-lh-lateralorbitofrontal 0 229 1013 ctx-lh-lingual 0 230 1014 ctx-lh-medialorbitofrontal 0 231 1015 ctx-lh-middletemporal 0 232 1016 ctx-lh-parahippocampal 0 233 1017 ctx-lh-paracentral 0 234 1018 ctx-lh-parsopercularis 0 235 1019 ctx-lh-parsorbitalis 0 236 1020 ctx-lh-parstriangularis 0 237 1021 ctx-lh-pericalcarine 0 238 1022 ctx-lh-postcentral 0 239 1023 ctx-lh-posteriorcingulate 0 240 1024 ctx-lh-precentral 0 241 1025 ctx-lh-precuneus 0 242 1026 ctx-lh-rostralanteriorcingulate 0 243 1027 ctx-lh-rostralmiddlefrontal 0 244 1028 ctx-lh-superiorfrontal 0 245 1029 ctx-lh-superiorparietal 0 246 1030 ctx-lh-superiortemporal 0 247 1031 ctx-lh-supramarginal 0 248 1032 ctx-lh-frontalpole 0 249 1033 ctx-lh-temporalpole 0 250 1034 ctx-lh-transversetemporal 0 251 2000 ctx-rh-unknown 0 252 2001 ctx-rh-bankssts 0 253 2002 ctx-rh-caudalanteriorcingulate 0 254 2003 ctx-rh-caudalmiddlefrontal 0 255 2004 ctx-rh-corpuscallosum 0 256 2005 ctx-rh-cuneus 0 257 2006 ctx-rh-entorhinal 0 258 2007 ctx-rh-fusiform 0 259 2008 ctx-rh-inferiorparietal 0 260 2009 ctx-rh-inferiortemporal 0 261 2010 ctx-rh-isthmuscingulate 0 262 2011 ctx-rh-lateraloccipital 0 263 2012 ctx-rh-lateralorbitofrontal 0 264 2013 ctx-rh-lingual 0 265 2014 ctx-rh-medialorbitofrontal 0 266 2015 ctx-rh-middletemporal 0 267 2016 ctx-rh-parahippocampal 0 268 2017 ctx-rh-paracentral 0 269 2018 ctx-rh-parsopercularis 0 270 2019 ctx-rh-parsorbitalis 0 271 2020 ctx-rh-parstriangularis 0 272 2021 ctx-rh-pericalcarine 0 273 2022 ctx-rh-postcentral 0 274 2023 ctx-rh-posteriorcingulate 0 275 2024 ctx-rh-precentral 0 276 2025 ctx-rh-precuneus 0 277 2026 ctx-rh-rostralanteriorcingulate 0 278 2027 ctx-rh-rostralmiddlefrontal 0 279 2028 ctx-rh-superiorfrontal 0 280 2029 ctx-rh-superiorparietal 0 281 2030 ctx-rh-superiortemporal 0 282 2031 ctx-rh-supramarginal 0 283 2032 ctx-rh-frontalpole 0 284 2033 ctx-rh-temporalpole 0 285 2034 ctx-rh-transversetemporal 0 286 3000 wm-lh-unknown 0 287 3001 wm-lh-bankssts 0 288 3002 wm-lh-caudalanteriorcingulate 0 289 3003 wm-lh-caudalmiddlefrontal 0 290 3004 wm-lh-corpuscallosum 0 291 3005 wm-lh-cuneus 0 292 3006 wm-lh-entorhinal 0 293 3007 wm-lh-fusiform 0 294 3008 wm-lh-inferiorparietal 0 295 3009 wm-lh-inferiortemporal 0 296 3010 wm-lh-isthmuscingulate 0 297 3011 wm-lh-lateraloccipital 0 298 3012 wm-lh-lateralorbitofrontal 0 299 3013 wm-lh-lingual 0 300 3014 wm-lh-medialorbitofrontal 0 301 3015 wm-lh-middletemporal 0 302 3016 wm-lh-parahippocampal 0 303 3017 wm-lh-paracentral 0 304 3018 wm-lh-parsopercularis 0 305 3019 wm-lh-parsorbitalis 0 306 3020 wm-lh-parstriangularis 0 307 3021 wm-lh-pericalcarine 0 308 3022 wm-lh-postcentral 0 309 3023 wm-lh-posteriorcingulate 0 310 3024 wm-lh-precentral 0 311 3025 wm-lh-precuneus 0 312 3026 wm-lh-rostralanteriorcingulate 0 313 3027 wm-lh-rostralmiddlefrontal 0 314 3028 wm-lh-superiorfrontal 0 315 3029 wm-lh-superiorparietal 0 316 3030 wm-lh-superiortemporal 0 317 3031 wm-lh-supramarginal 0 318 3032 wm-lh-frontalpole 0 319 3033 wm-lh-temporalpole 0 320 3034 wm-lh-transversetemporal 0 321 4000 wm-rh-unknown 0 322 4001 wm-rh-bankssts 0 323 4002 wm-rh-caudalanteriorcingulate 0 324 4003 wm-rh-caudalmiddlefrontal 0 325 4004 wm-rh-corpuscallosum 0 326 4005 wm-rh-cuneus 0 327 4006 wm-rh-entorhinal 0 328 4007 wm-rh-fusiform 0 329 4008 wm-rh-inferiorparietal 0 330 4009 wm-rh-inferiortemporal 0 331 4010 wm-rh-isthmuscingulate 0 332 4011 wm-rh-lateraloccipital 0 333 4012 wm-rh-lateralorbitofrontal 0 334 4013 wm-rh-lingual 0 335 4014 wm-rh-medialorbitofrontal 0 336 4015 wm-rh-middletemporal 0 337 4016 wm-rh-parahippocampal 0 338 4017 wm-rh-paracentral 0 339 4018 wm-rh-parsopercularis 0 340 4019 wm-rh-parsorbitalis 0 341 4020 wm-rh-parstriangularis 0 342 4021 wm-rh-pericalcarine 0 343 4022 wm-rh-postcentral 0 344 4023 wm-rh-posteriorcingulate 0 345 4024 wm-rh-precentral 0 346 4025 wm-rh-precuneus 0 347 4026 wm-rh-rostralanteriorcingulate 0 348 4027 wm-rh-rostralmiddlefrontal 0 349 4028 wm-rh-superiorfrontal 0 350 4029 wm-rh-superiorparietal 0 351 4030 wm-rh-superiortemporal 0 352 4031 wm-rh-supramarginal 0 353 4032 wm-rh-frontalpole 0 354 4033 wm-rh-temporalpole 0 355 4034 wm-rh-transversetemporal 0 356 5001 wm-lh-centrum-semiovale 0 357 5002 wm-rh-centrum-semiovale 0 358 1100 ctx-lh-Unknown 0 359 1101 ctx-lh-Corpus_callosum 0 360 1102 ctx-lh-G_and_S_Insula_ONLY_AVERAGE 0 361 1103 ctx-lh-G_cingulate-Isthmus 0 362 1104 ctx-lh-G_cingulate-Main_part 0 363 1105 ctx-lh-G_cuneus 0 364 1106 ctx-lh-G_frontal_inf-Opercular_part 0 365 1107 ctx-lh-G_frontal_inf-Orbital_part 0 366 1108 ctx-lh-G_frontal_inf-Triangular_part 0 367 1109 ctx-lh-G_frontal_middle 0 368 1110 ctx-lh-G_frontal_superior 0 369 1111 ctx-lh-G_frontomarginal 0 370 1112 ctx-lh-G_insular_long 0 371 1113 ctx-lh-G_insular_short 0 372 1114 ctx-lh-G_and_S_occipital_inferior 0 373 1115 ctx-lh-G_occipital_middle 0 374 1116 ctx-lh-G_occipital_superior 0 375 1117 ctx-lh-G_occipit-temp_lat-Or_fusiform 0 376 1118 ctx-lh-G_occipit-temp_med-Lingual_part 0 377 1119 ctx-lh-G_occipit-temp_med-Parahippocampal_part 0 378 1120 ctx-lh-G_orbital 0 379 1121 ctx-lh-G_paracentral 0 380 1122 ctx-lh-G_parietal_inferior-Angular_part 0 381 1123 ctx-lh-G_parietal_inferior-Supramarginal_part 0 382 1124 ctx-lh-G_parietal_superior 0 383 1125 ctx-lh-G_postcentral 0 384 1126 ctx-lh-G_precentral 0 385 1127 ctx-lh-G_precuneus 0 386 1128 ctx-lh-G_rectus 0 387 1129 ctx-lh-G_subcallosal 0 388 1130 ctx-lh-G_subcentral 0 389 1131 ctx-lh-G_temporal_inferior 0 390 1132 ctx-lh-G_temporal_middle 0 391 1133 ctx-lh-G_temp_sup-G_temp_transv_and_interm_S 0 392 1134 ctx-lh-G_temp_sup-Lateral_aspect 0 393 1135 ctx-lh-G_temp_sup-Planum_polare 0 394 1136 ctx-lh-G_temp_sup-Planum_tempolare 0 395 1137 ctx-lh-G_and_S_transverse_frontopolar 0 396 1138 ctx-lh-Lat_Fissure-ant_sgt-ramus_horizontal 0 397 1139 ctx-lh-Lat_Fissure-ant_sgt-ramus_vertical 0 398 1140 ctx-lh-Lat_Fissure-post_sgt 0 399 1141 ctx-lh-Medial_wall 0 400 1142 ctx-lh-Pole_occipital 0 401 1143 ctx-lh-Pole_temporal 0 402 1144 ctx-lh-S_calcarine 0 403 1145 ctx-lh-S_central 0 404 1146 ctx-lh-S_central_insula 0 405 1147 ctx-lh-S_cingulate-Main_part_and_Intracingulate 0 406 1148 ctx-lh-S_cingulate-Marginalis_part 0 407 1149 ctx-lh-S_circular_insula_anterior 0 408 1150 ctx-lh-S_circular_insula_inferior 0 409 1151 ctx-lh-S_circular_insula_superior 0 410 1152 ctx-lh-S_collateral_transverse_ant 0 411 1153 ctx-lh-S_collateral_transverse_post 0 412 1154 ctx-lh-S_frontal_inferior 0 413 1155 ctx-lh-S_frontal_middle 0 414 1156 ctx-lh-S_frontal_superior 0 415 1157 ctx-lh-S_frontomarginal 0 416 1158 ctx-lh-S_intermedius_primus-Jensen 0 417 1159 ctx-lh-S_intraparietal-and_Parietal_transverse 0 418 1160 ctx-lh-S_occipital_anterior 0 419 1161 ctx-lh-S_occipital_middle_and_Lunatus 0 420 1162 ctx-lh-S_occipital_superior_and_transversalis 0 421 1163 ctx-lh-S_occipito-temporal_lateral 0 422 1164 ctx-lh-S_occipito-temporal_medial_and_S_Lingual 0 423 1165 ctx-lh-S_orbital-H_shapped 0 424 1166 ctx-lh-S_orbital_lateral 0 425 1167 ctx-lh-S_orbital_medial-Or_olfactory 0 426 1168 ctx-lh-S_paracentral 0 427 1169 ctx-lh-S_parieto_occipital 0 428 1170 ctx-lh-S_pericallosal 0 429 1171 ctx-lh-S_postcentral 0 430 1172 ctx-lh-S_precentral-Inferior-part 0 431 1173 ctx-lh-S_precentral-Superior-part 0 432 1174 ctx-lh-S_subcentral_ant 0 433 1175 ctx-lh-S_subcentral_post 0 434 1176 ctx-lh-S_suborbital 0 435 1177 ctx-lh-S_subparietal 0 436 1178 ctx-lh-S_supracingulate 0 437 1179 ctx-lh-S_temporal_inferior 0 438 1180 ctx-lh-S_temporal_superior 0 439 1181 ctx-lh-S_temporal_transverse 0 440 2100 ctx-rh-Unknown 0 441 2101 ctx-rh-Corpus_callosum 0 442 2102 ctx-rh-G_and_S_Insula_ONLY_AVERAGE 0 443 2103 ctx-rh-G_cingulate-Isthmus 0 444 2104 ctx-rh-G_cingulate-Main_part 0 445 2105 ctx-rh-G_cuneus 0 446 2106 ctx-rh-G_frontal_inf-Opercular_part 0 447 2107 ctx-rh-G_frontal_inf-Orbital_part 0 448 2108 ctx-rh-G_frontal_inf-Triangular_part 0 449 2109 ctx-rh-G_frontal_middle 0 450 2110 ctx-rh-G_frontal_superior 0 451 2111 ctx-rh-G_frontomarginal 0 452 2112 ctx-rh-G_insular_long 0 453 2113 ctx-rh-G_insular_short 0 454 2114 ctx-rh-G_and_S_occipital_inferior 0 455 2115 ctx-rh-G_occipital_middle 0 456 2116 ctx-rh-G_occipital_superior 0 457 2117 ctx-rh-G_occipit-temp_lat-Or_fusiform 0 458 2118 ctx-rh-G_occipit-temp_med-Lingual_part 0 459 2119 ctx-rh-G_occipit-temp_med-Parahippocampal_part 0 460 2120 ctx-rh-G_orbital 0 461 2121 ctx-rh-G_paracentral 0 462 2122 ctx-rh-G_parietal_inferior-Angular_part 0 463 2123 ctx-rh-G_parietal_inferior-Supramarginal_part 0 464 2124 ctx-rh-G_parietal_superior 0 465 2125 ctx-rh-G_postcentral 0 466 2126 ctx-rh-G_precentral 0 467 2127 ctx-rh-G_precuneus 0 468 2128 ctx-rh-G_rectus 0 469 2129 ctx-rh-G_subcallosal 0 470 2130 ctx-rh-G_subcentral 0 471 2131 ctx-rh-G_temporal_inferior 0 472 2132 ctx-rh-G_temporal_middle 0 473 2133 ctx-rh-G_temp_sup-G_temp_transv_and_interm_S 0 474 2134 ctx-rh-G_temp_sup-Lateral_aspect 0 475 2135 ctx-rh-G_temp_sup-Planum_polare 0 476 2136 ctx-rh-G_temp_sup-Planum_tempolare 0 477 2137 ctx-rh-G_and_S_transverse_frontopolar 0 478 2138 ctx-rh-Lat_Fissure-ant_sgt-ramus_horizontal 0 479 2139 ctx-rh-Lat_Fissure-ant_sgt-ramus_vertical 0 480 2140 ctx-rh-Lat_Fissure-post_sgt 0 481 2141 ctx-rh-Medial_wall 0 482 2142 ctx-rh-Pole_occipital 0 483 2143 ctx-rh-Pole_temporal 0 484 2144 ctx-rh-S_calcarine 0 485 2145 ctx-rh-S_central 0 486 2146 ctx-rh-S_central_insula 0 487 2147 ctx-rh-S_cingulate-Main_part_and_Intracingulate 0 488 2148 ctx-rh-S_cingulate-Marginalis_part 0 489 2149 ctx-rh-S_circular_insula_anterior 0 490 2150 ctx-rh-S_circular_insula_inferior 0 491 2151 ctx-rh-S_circular_insula_superior 0 492 2152 ctx-rh-S_collateral_transverse_ant 0 493 2153 ctx-rh-S_collateral_transverse_post 0 494 2154 ctx-rh-S_frontal_inferior 0 495 2155 ctx-rh-S_frontal_middle 0 496 2156 ctx-rh-S_frontal_superior 0 497 2157 ctx-rh-S_frontomarginal 0 498 2158 ctx-rh-S_intermedius_primus-Jensen 0 499 2159 ctx-rh-S_intraparietal-and_Parietal_transverse 0 500 2160 ctx-rh-S_occipital_anterior 0 501 2161 ctx-rh-S_occipital_middle_and_Lunatus 0 502 2162 ctx-rh-S_occipital_superior_and_transversalis 0 503 2163 ctx-rh-S_occipito-temporal_lateral 0 504 2164 ctx-rh-S_occipito-temporal_medial_and_S_Lingual 0 505 2165 ctx-rh-S_orbital-H_shapped 0 506 2166 ctx-rh-S_orbital_lateral 0 507 2167 ctx-rh-S_orbital_medial-Or_olfactory 0 508 2168 ctx-rh-S_paracentral 0 509 2169 ctx-rh-S_parieto_occipital 0 510 2170 ctx-rh-S_pericallosal 0 511 2171 ctx-rh-S_postcentral 0 512 2172 ctx-rh-S_precentral-Inferior-part 0 513 2173 ctx-rh-S_precentral-Superior-part 0 514 2174 ctx-rh-S_subcentral_ant 0 515 2175 ctx-rh-S_subcentral_post 0 516 2176 ctx-rh-S_suborbital 0 517 2177 ctx-rh-S_subparietal 0 518 2178 ctx-rh-S_supracingulate 0 519 2179 ctx-rh-S_temporal_inferior 0 520 2180 ctx-rh-S_temporal_superior 0 521 2181 ctx-rh-S_temporal_transverse 0 522 3100 wm-lh-Unknown 0 523 3101 wm-lh-Corpus_callosum 0 524 3102 wm-lh-G_and_S_Insula_ONLY_AVERAGE 0 525 3103 wm-lh-G_cingulate-Isthmus 0 526 3104 wm-lh-G_cingulate-Main_part 0 527 3105 wm-lh-G_cuneus 0 528 3106 wm-lh-G_frontal_inf-Opercular_part 0 529 3107 wm-lh-G_frontal_inf-Orbital_part 0 530 3108 wm-lh-G_frontal_inf-Triangular_part 0 531 3109 wm-lh-G_frontal_middle 0 532 3110 wm-lh-G_frontal_superior 0 533 3111 wm-lh-G_frontomarginal 0 534 3112 wm-lh-G_insular_long 0 535 3113 wm-lh-G_insular_short 0 536 3114 wm-lh-G_and_S_occipital_inferior 0 537 3115 wm-lh-G_occipital_middle 0 538 3116 wm-lh-G_occipital_superior 0 539 3117 wm-lh-G_occipit-temp_lat-Or_fusiform 0 540 3118 wm-lh-G_occipit-temp_med-Lingual_part 0 541 3119 wm-lh-G_occipit-temp_med-Parahippocampal_part 0 542 3120 wm-lh-G_orbital 0 543 3121 wm-lh-G_paracentral 0 544 3122 wm-lh-G_parietal_inferior-Angular_part 0 545 3123 wm-lh-G_parietal_inferior-Supramarginal_part 0 546 3124 wm-lh-G_parietal_superior 0 547 3125 wm-lh-G_postcentral 0 548 3126 wm-lh-G_precentral 0 549 3127 wm-lh-G_precuneus 0 550 3128 wm-lh-G_rectus 0 551 3129 wm-lh-G_subcallosal 0 552 3130 wm-lh-G_subcentral 0 553 3131 wm-lh-G_temporal_inferior 0 554 3132 wm-lh-G_temporal_middle 0 555 3133 wm-lh-G_temp_sup-G_temp_transv_and_interm_S 0 556 3134 wm-lh-G_temp_sup-Lateral_aspect 0 557 3135 wm-lh-G_temp_sup-Planum_polare 0 558 3136 wm-lh-G_temp_sup-Planum_tempolare 0 559 3137 wm-lh-G_and_S_transverse_frontopolar 0 560 3138 wm-lh-Lat_Fissure-ant_sgt-ramus_horizontal 0 561 3139 wm-lh-Lat_Fissure-ant_sgt-ramus_vertical 0 562 3140 wm-lh-Lat_Fissure-post_sgt 0 563 3141 wm-lh-Medial_wall 0 564 3142 wm-lh-Pole_occipital 0 565 3143 wm-lh-Pole_temporal 0 566 3144 wm-lh-S_calcarine 0 567 3145 wm-lh-S_central 0 568 3146 wm-lh-S_central_insula 0 569 3147 wm-lh-S_cingulate-Main_part_and_Intracingulate 0 570 3148 wm-lh-S_cingulate-Marginalis_part 0 571 3149 wm-lh-S_circular_insula_anterior 0 572 3150 wm-lh-S_circular_insula_inferior 0 573 3151 wm-lh-S_circular_insula_superior 0 574 3152 wm-lh-S_collateral_transverse_ant 0 575 3153 wm-lh-S_collateral_transverse_post 0 576 3154 wm-lh-S_frontal_inferior 0 577 3155 wm-lh-S_frontal_middle 0 578 3156 wm-lh-S_frontal_superior 0 579 3157 wm-lh-S_frontomarginal 0 580 3158 wm-lh-S_intermedius_primus-Jensen 0 581 3159 wm-lh-S_intraparietal-and_Parietal_transverse 0 582 3160 wm-lh-S_occipital_anterior 0 583 3161 wm-lh-S_occipital_middle_and_Lunatus 0 584 3162 wm-lh-S_occipital_superior_and_transversalis 0 585 3163 wm-lh-S_occipito-temporal_lateral 0 586 3164 wm-lh-S_occipito-temporal_medial_and_S_Lingual 0 587 3165 wm-lh-S_orbital-H_shapped 0 588 3166 wm-lh-S_orbital_lateral 0 589 3167 wm-lh-S_orbital_medial-Or_olfactory 0 590 3168 wm-lh-S_paracentral 0 591 3169 wm-lh-S_parieto_occipital 0 592 3170 wm-lh-S_pericallosal 0 593 3171 wm-lh-S_postcentral 0 594 3172 wm-lh-S_precentral-Inferior-part 0 595 3173 wm-lh-S_precentral-Superior-part 0 596 3174 wm-lh-S_subcentral_ant 0 597 3175 wm-lh-S_subcentral_post 0 598 3176 wm-lh-S_suborbital 0 599 3177 wm-lh-S_subparietal 0 600 3178 wm-lh-S_supracingulate 0 601 3179 wm-lh-S_temporal_inferior 0 602 3180 wm-lh-S_temporal_superior 0 603 3181 wm-lh-S_temporal_transverse 0 604 4100 wm-rh-Unknown 0 605 4101 wm-rh-Corpus_callosum 0 606 4102 wm-rh-G_and_S_Insula_ONLY_AVERAGE 0 607 4103 wm-rh-G_cingulate-Isthmus 0 608 4104 wm-rh-G_cingulate-Main_part 0 609 4105 wm-rh-G_cuneus 0 610 4106 wm-rh-G_frontal_inf-Opercular_part 0 611 4107 wm-rh-G_frontal_inf-Orbital_part 0 612 4108 wm-rh-G_frontal_inf-Triangular_part 0 613 4109 wm-rh-G_frontal_middle 0 614 4110 wm-rh-G_frontal_superior 0 615 4111 wm-rh-G_frontomarginal 0 616 4112 wm-rh-G_insular_long 0 617 4113 wm-rh-G_insular_short 0 618 4114 wm-rh-G_and_S_occipital_inferior 0 619 4115 wm-rh-G_occipital_middle 0 620 4116 wm-rh-G_occipital_superior 0 621 4117 wm-rh-G_occipit-temp_lat-Or_fusiform 0 622 4118 wm-rh-G_occipit-temp_med-Lingual_part 0 623 4119 wm-rh-G_occipit-temp_med-Parahippocampal_part 0 624 4120 wm-rh-G_orbital 0 625 4121 wm-rh-G_paracentral 0 626 4122 wm-rh-G_parietal_inferior-Angular_part 0 627 4123 wm-rh-G_parietal_inferior-Supramarginal_part 0 628 4124 wm-rh-G_parietal_superior 0 629 4125 wm-rh-G_postcentral 0 630 4126 wm-rh-G_precentral 0 631 4127 wm-rh-G_precuneus 0 632 4128 wm-rh-G_rectus 0 633 4129 wm-rh-G_subcallosal 0 634 4130 wm-rh-G_subcentral 0 635 4131 wm-rh-G_temporal_inferior 0 636 4132 wm-rh-G_temporal_middle 0 637 4133 wm-rh-G_temp_sup-G_temp_transv_and_interm_S 0 638 4134 wm-rh-G_temp_sup-Lateral_aspect 0 639 4135 wm-rh-G_temp_sup-Planum_polare 0 640 4136 wm-rh-G_temp_sup-Planum_tempolare 0 641 4137 wm-rh-G_and_S_transverse_frontopolar 0 642 4138 wm-rh-Lat_Fissure-ant_sgt-ramus_horizontal 0 643 4139 wm-rh-Lat_Fissure-ant_sgt-ramus_vertical 0 644 4140 wm-rh-Lat_Fissure-post_sgt 0 645 4141 wm-rh-Medial_wall 0 646 4142 wm-rh-Pole_occipital 0 647 4143 wm-rh-Pole_temporal 0 648 4144 wm-rh-S_calcarine 0 649 4145 wm-rh-S_central 0 650 4146 wm-rh-S_central_insula 0 651 4147 wm-rh-S_cingulate-Main_part_and_Intracingulate 0 652 4148 wm-rh-S_cingulate-Marginalis_part 0 653 4149 wm-rh-S_circular_insula_anterior 0 654 4150 wm-rh-S_circular_insula_inferior 0 655 4151 wm-rh-S_circular_insula_superior 0 656 4152 wm-rh-S_collateral_transverse_ant 0 657 4153 wm-rh-S_collateral_transverse_post 0 658 4154 wm-rh-S_frontal_inferior 0 659 4155 wm-rh-S_frontal_middle 0 660 4156 wm-rh-S_frontal_superior 0 661 4157 wm-rh-S_frontomarginal 0 662 4158 wm-rh-S_intermedius_primus-Jensen 0 663 4159 wm-rh-S_intraparietal-and_Parietal_transverse 0 664 4160 wm-rh-S_occipital_anterior 0 665 4161 wm-rh-S_occipital_middle_and_Lunatus 0 666 4162 wm-rh-S_occipital_superior_and_transversalis 0 667 4163 wm-rh-S_occipito-temporal_lateral 0 668 4164 wm-rh-S_occipito-temporal_medial_and_S_Lingual 0 669 4165 wm-rh-S_orbital-H_shapped 0 670 4166 wm-rh-S_orbital_lateral 0 671 4167 wm-rh-S_orbital_medial-Or_olfactory 0 672 4168 wm-rh-S_paracentral 0 673 4169 wm-rh-S_parieto_occipital 0 674 4170 wm-rh-S_pericallosal 0 675 4171 wm-rh-S_postcentral 0 676 4172 wm-rh-S_precentral-Inferior-part 0 677 4173 wm-rh-S_precentral-Superior-part 0 678 4174 wm-rh-S_subcentral_ant 0 679 4175 wm-rh-S_subcentral_post 0 680 4176 wm-rh-S_suborbital 0 681 4177 wm-rh-S_subparietal 0 682 4178 wm-rh-S_supracingulate 0 683 4179 wm-rh-S_temporal_inferior 0 684 4180 wm-rh-S_temporal_superior 0 685 4181 wm-rh-S_temporal_transverse 0 Reporting on 685 segmentations #-------------------------------------------- #@# Intensity Normalization2 Thu Jun 21 01:46:26 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_normalize -mask brainmask.mgz -aseg aseg.mgz norm.mgz brain.mgz using segmentation for initial intensity normalization reading from norm.mgz... normalizing image... removing outliers in the aseg WM... 20664 control points removed building Voronoi diagram... performing soap bubble smoothing... building Voronoi diagram... performing soap bubble smoothing... 3d normalization pass 1 of 2 building Voronoi diagram... performing soap bubble smoothing... 3d normalization pass 2 of 2 building Voronoi diagram... performing soap bubble smoothing... writing output to brain.mgz 3D bias adjustment took 5 minutes and 21 seconds. using MR volume brainmask.mgz to mask input volume... using wm threshold 103.0 for removing exterior voxels white matter peak found at 110 gm peak at 71 (71), valley at 58 (58) csf peak at 36, setting threshold to 59 white matter peak found at 110 gm peak at 55 (55), valley at 14 (14) csf peak at 28, setting threshold to 46 #-------------------------------------------- #@# Mask BFS Thu Jun 21 01:51:55 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 writing masked volume to brain.finalsurfs.mgz... #-------------------------------------------- #@# WM Segmentation Thu Jun 21 01:52:01 EDT 2007 mri_segment brain.mgz wm.seg.mgz doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM: 110.0 +- 7.1 [80.0 --> 125.0] GM: 62.1 +- 13.3 [30.0 --> 96.0] setting bottom of white matter range to 75.5 setting top of gray matter range to 88.8 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 20532 sparsely connected voxels removed... thickening thin strands.... 20 segments, 8904 filled 41771 bright non-wm voxels segmented. 17482 diagonally connected voxels added... white matter segmentation took 6.1 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.66 minutes reading wm segmentation from wm.seg.mgz... 0 voxels added to wm to prevent paths from MTL structures to cortex 14106 additional wm voxels added 0 additional wm voxels added SEG EDIT: 41230 voxels turned on, 707910 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 0 new 0 115,126,128 old 0 new 0 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 92 found - 92 modified | TOTAL: 92 pass 2 (xy+): 0 found - 92 modified | TOTAL: 92 pass 1 (xy-): 59 found - 59 modified | TOTAL: 151 pass 2 (xy-): 0 found - 59 modified | TOTAL: 151 pass 1 (yz+): 99 found - 99 modified | TOTAL: 250 pass 2 (yz+): 0 found - 99 modified | TOTAL: 250 pass 1 (yz-): 62 found - 62 modified | TOTAL: 312 pass 2 (yz-): 0 found - 62 modified | TOTAL: 312 pass 1 (xz+): 78 found - 78 modified | TOTAL: 390 pass 2 (xz+): 0 found - 78 modified | TOTAL: 390 pass 1 (xz-): 94 found - 94 modified | TOTAL: 484 pass 2 (xz-): 0 found - 94 modified | TOTAL: 484 Iteration Number : 1 pass 1 (+++): 33 found - 33 modified | TOTAL: 33 pass 2 (+++): 0 found - 33 modified | TOTAL: 33 pass 1 (+++): 27 found - 27 modified | TOTAL: 60 pass 2 (+++): 0 found - 27 modified | TOTAL: 60 pass 1 (+++): 25 found - 25 modified | TOTAL: 85 pass 2 (+++): 0 found - 25 modified | TOTAL: 85 pass 1 (+++): 33 found - 33 modified | TOTAL: 118 pass 2 (+++): 0 found - 33 modified | TOTAL: 118 Iteration Number : 1 pass 1 (++): 58 found - 58 modified | TOTAL: 58 pass 2 (++): 0 found - 58 modified | TOTAL: 58 pass 1 (+-): 56 found - 56 modified | TOTAL: 114 pass 2 (+-): 0 found - 56 modified | TOTAL: 114 pass 1 (--): 55 found - 55 modified | TOTAL: 169 pass 2 (--): 0 found - 55 modified | TOTAL: 169 pass 1 (-+): 75 found - 75 modified | TOTAL: 244 pass 2 (-+): 0 found - 75 modified | TOTAL: 244 Iteration Number : 2 pass 1 (xy+): 9 found - 9 modified | TOTAL: 9 pass 2 (xy+): 0 found - 9 modified | TOTAL: 9 pass 1 (xy-): 8 found - 8 modified | TOTAL: 17 pass 2 (xy-): 0 found - 8 modified | TOTAL: 17 pass 1 (yz+): 9 found - 9 modified | TOTAL: 26 pass 2 (yz+): 0 found - 9 modified | TOTAL: 26 pass 1 (yz-): 9 found - 9 modified | TOTAL: 35 pass 2 (yz-): 0 found - 9 modified | TOTAL: 35 pass 1 (xz+): 5 found - 5 modified | TOTAL: 40 pass 2 (xz+): 0 found - 5 modified | TOTAL: 40 pass 1 (xz-): 8 found - 8 modified | TOTAL: 48 pass 2 (xz-): 0 found - 8 modified | TOTAL: 48 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 4 found - 4 modified | TOTAL: 4 pass 2 (+++): 0 found - 4 modified | TOTAL: 4 pass 1 (+++): 2 found - 2 modified | TOTAL: 6 pass 2 (+++): 0 found - 2 modified | TOTAL: 6 pass 1 (+++): 0 found - 0 modified | TOTAL: 6 Iteration Number : 2 pass 1 (++): 9 found - 9 modified | TOTAL: 9 pass 2 (++): 0 found - 9 modified | TOTAL: 9 pass 1 (+-): 2 found - 2 modified | TOTAL: 11 pass 2 (+-): 0 found - 2 modified | TOTAL: 11 pass 1 (--): 4 found - 4 modified | TOTAL: 15 pass 2 (--): 0 found - 4 modified | TOTAL: 15 pass 1 (-+): 4 found - 4 modified | TOTAL: 19 pass 2 (-+): 0 found - 4 modified | TOTAL: 19 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 1 found - 1 modified | TOTAL: 1 pass 2 (xy-): 0 found - 1 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 1 found - 1 modified | TOTAL: 2 pass 2 (yz-): 0 found - 1 modified | TOTAL: 2 pass 1 (xz+): 0 found - 0 modified | TOTAL: 2 pass 1 (xz-): 1 found - 1 modified | TOTAL: 3 pass 2 (xz-): 0 found - 1 modified | TOTAL: 3 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 922 (out of 76571: 1.204111) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill Thu Jun 21 01:58:57 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.809 0.747 0.019 -255.835; -0.880 2.166 -0.530 -151.473; -0.037 0.071 1.524 -163.836; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 1.809 0.747 0.019 -255.835; -0.880 2.166 -0.530 -151.473; -0.037 0.071 1.524 -163.836; 0.000 0.000 0.000 1.000; Looking for area (min, max) = (350, 1400) area[0] = 4335 (min = 350, max = 1400), aspect = 0.77 (min = 0.10, max = 0.75) need search nearby using seed (115, 138, 154), TAL = (13.0, 26.0, -10.0) talairach voxel to voxel transform 0.473 -0.161 -0.062 86.519; 0.193 0.391 0.133 130.449; 0.003 -0.022 0.648 103.543; 0.000 0.000 0.000 1.000; done. writing output to filled.mgz... filling took 1.6 minutes INFO: Modifying dst c_(r,a,s), using the transform dst INFO: Modifying dst c_(r,a,s), using the transform dst reading segmented volume aseg.mgz... INFO: Modifying dst c_(r,a,s), using the transform dst segmentation indicates cc at (115, 138, 154) --> (13.0, 26.0, -10.0) INFO: Modifying dst c_(r,a,s), using the transform dst talairach cc position changed to (13.00, 26.00, -10.00) ERASING BRAINSTEMseed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(31.00, 26.00, -10.00) SRC: (100.65, 223.66, 200.59) search lh wm seed point around talairach space (-5.00, 26.00, -10.00), SRC: (117.69, 230.61, 200.68) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Thu Jun 21 02:00:35 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/scripts mri_tessellate ../mri/filled.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.27.2.1 2006/05/02 21:41:01 nicks Exp $ $Id: mrisurf.c,v 1.441.2.5 2006/11/29 20:28:16 nicks Exp $ slice 130: 697 vertices, 762 faces slice 140: 2659 vertices, 2721 faces slice 150: 4357 vertices, 4453 faces slice 160: 7210 vertices, 7386 faces slice 170: 12462 vertices, 12719 faces slice 180: 17570 vertices, 17881 faces slice 190: 22286 vertices, 22641 faces slice 200: 27066 vertices, 27516 faces slice 210: 31897 vertices, 32376 faces slice 220: 36004 vertices, 36483 faces slice 230: 37379 vertices, 37768 faces slice 240: 37379 vertices, 37768 faces slice 250: 37379 vertices, 37768 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using ras2vox matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; #-------------------------------------------- #@# Smooth1 lh Thu Jun 21 02:01:58 EDT 2007 mris_smooth -nw ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix /home/richfrye/Desktop/MRI/sub089/sub089mri/scripts smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Thu Jun 21 02:02:00 EDT 2007 mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix /home/richfrye/Desktop/MRI/sub089/sub089mri/scripts avg radius = 28.2 mm, total surface area = 18328 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.4 minutes Not saving sulc step 000: RMS=0.262 (target=0.015) step 005: RMS=0.217 (target=0.015) step 010: RMS=0.197 (target=0.015) step 015: RMS=0.192 (target=0.015) step 020: RMS=0.191 (target=0.015) step 025: RMS=0.190 (target=0.015) step 030: RMS=0.189 (target=0.015) step 035: RMS=0.189 (target=0.015) step 040: RMS=0.188 (target=0.015) step 045: RMS=0.189 (target=0.015) step 050: RMS=0.188 (target=0.015) step 055: RMS=0.189 (target=0.015) step 060: RMS=0.189 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere lh Thu Jun 21 02:02:22 EDT 2007 /home/richfrye/Desktop/MRI/sub089/sub089mri/scripts mris_sphere -q ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. $Id: mris_sphere.c,v 1.38 2006/02/08 00:17:40 nicks Exp $ $Id: mrisurf.c,v 1.441.2.5 2006/11/29 20:28:16 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... tol=1.0e+00, host=local, nav=0, nbrs=1, l_spring_norm=1.000, l_sphere=0.025, l_convex=1.000 mom=0.90, dt=0.90 surface projected - minimizing metric distortion... vertex spacing 1.66 +- 1.37 (0.00-->21.11) (max @ vno 6955 --> 6956) face area 0.23 +- 0.43 (-4.23-->5.63) tol=1.0e-01, host=local, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization tol=1.8e+01, host=local, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization 301: dt: 5.61, sse: 1774.8 (0.265, 46.6, 0.738), neg: 15668 (%3.850:%7.66), avgs: 32 302: dt: 16.40, sse: 1627.4 (0.268, 46.6, 0.741), neg: 15922 (%2.851:%7.36), avgs: 32 303: dt: 9.29, sse: 1568.9 (0.266, 46.5, 0.740), neg: 15931 (%2.452:%7.27), avgs: 32 304: dt: 8.43, sse: 1544.5 (0.267, 46.4, 0.742), neg: 15879 (%2.258:%7.06), avgs: 32 305: dt: 0.29, sse: 1543.4 (0.267, 46.4, 0.741), neg: 15876 (%2.250:%7.05), avgs: 32 306: dt: 0.29, sse: 1541.4 (0.267, 46.4, 0.741), neg: 15874 (%2.236:%7.04), avgs: 32 307: dt: 0.29, sse: 1538.7 (0.267, 46.4, 0.741), neg: 15897 (%2.217:%7.05), avgs: 32 308: dt: 0.29, sse: 1535.4 (0.267, 46.4, 0.741), neg: 15895 (%2.194:%7.06), avgs: 32 309: dt: 0.29, sse: 1532.1 (0.267, 46.4, 0.741), neg: 15905 (%2.168:%7.05), avgs: 32 310: dt: 0.29, sse: 1529.3 (0.267, 46.4, 0.741), neg: 15911 (%2.145:%7.04), avgs: 32 vertex spacing 1.66 +- 1.40 (0.00-->20.57) (max @ vno 6955 --> 6956) face area 0.24 +- 0.44 (-0.77-->5.81) 311: dt: 0.29, sse: 1526.4 (0.267, 46.4, 0.741), neg: 15936 (%2.121:%7.02), avgs: 32 312: dt: 0.29, sse: 1524.6 (0.267, 46.4, 0.741), neg: 15938 (%2.102:%7.02), avgs: 32 313: dt: 0.29, sse: 1521.9 (0.267, 46.4, 0.742), neg: 15918 (%2.079:%7.00), avgs: 32 314: dt: 0.29, sse: 1519.0 (0.267, 46.4, 0.742), neg: 15897 (%2.053:%6.98), avgs: 32 315: dt: 8.31, sse: 1508.4 (0.268, 46.4, 0.743), neg: 15826 (%1.961:%6.79), avgs: 32 vertex spacing 1.66 +- 1.40 (0.00-->20.62) (max @ vno 6955 --> 6956) face area 0.24 +- 0.44 (-1.02-->5.83) 316: dt: 0.49, sse: 1499.8 (0.268, 46.4, 0.743), neg: 15869 (%1.899:%6.80), avgs: 8 317: dt: 0.15, sse: 1495.0 (0.268, 46.4, 0.743), neg: 15872 (%1.861:%6.76), avgs: 8 318: dt: 0.15, sse: 1489.0 (0.268, 46.4, 0.743), neg: 15907 (%1.815:%6.75), avgs: 8 319: dt: 0.15, sse: 1483.4 (0.269, 46.4, 0.743), neg: 15929 (%1.768:%6.71), avgs: 8 320: dt: 0.15, sse: 1477.7 (0.269, 46.4, 0.743), neg: 15956 (%1.721:%6.69), avgs: 8 vertex spacing 1.66 +- 1.40 (0.00-->20.61) (max @ vno 6955 --> 6956) face area 0.24 +- 0.44 (-0.58-->5.85) 321: dt: 0.15, sse: 1471.9 (0.269, 46.4, 0.744), neg: 15974 (%1.673:%6.66), avgs: 8 322: dt: 0.15, sse: 1466.9 (0.269, 46.5, 0.744), neg: 16002 (%1.631:%6.61), avgs: 8 323: dt: 0.15, sse: 1462.4 (0.270, 46.5, 0.744), neg: 16021 (%1.591:%6.54), avgs: 8 324: dt: 0.15, sse: 1458.3 (0.270, 46.5, 0.745), neg: 16084 (%1.555:%6.52), avgs: 8 325: dt: 0.15, sse: 1454.4 (0.270, 46.5, 0.745), neg: 16099 (%1.522:%6.45), avgs: 8 326: dt: 0.15, sse: 1452.2 (0.270, 46.5, 0.745), neg: 16124 (%1.502:%6.41), avgs: 8 327: dt: 0.93, sse: 1449.1 (0.270, 46.5, 0.745), neg: 16139 (%1.474:%6.40), avgs: 8 vertex spacing 1.66 +- 1.41 (0.00-->20.60) (max @ vno 6955 --> 6956) face area 0.24 +- 0.44 (-0.45-->5.87) 328: dt: 0.02, sse: 1447.4 (0.270, 46.5, 0.745), neg: 16174 (%1.463:%6.43), avgs: 2 329: dt: 0.09, sse: 1448.0 (0.271, 46.6, 0.746), neg: 16206 (%1.457:%6.36), avgs: 2 330: dt: 0.09, sse: 1454.7 (0.271, 46.6, 0.746), neg: 16241 (%1.481:%6.34), avgs: 2 vertex spacing 1.66 +- 1.41 (0.00-->20.77) (max @ vno 6955 --> 6956) face area 0.24 +- 0.44 (-2.16-->5.87) 331: dt: 0.09, sse: 1443.2 (0.271, 46.7, 0.746), neg: 16292 (%1.408:%6.28), avgs: 2 332: dt: 0.09, sse: 1438.2 (0.271, 46.7, 0.747), neg: 16302 (%1.370:%6.20), avgs: 2 333: dt: 0.09, sse: 1434.3 (0.271, 46.8, 0.747), neg: 16354 (%1.339:%6.19), avgs: 2 334: dt: 0.09, sse: 1430.9 (0.272, 46.8, 0.747), neg: 16409 (%1.312:%6.14), avgs: 2 335: dt: 0.09, sse: 1428.5 (0.272, 46.9, 0.748), neg: 16459 (%1.293:%6.08), avgs: 2 336: dt: 0.09, sse: 1432.8 (0.272, 46.9, 0.748), neg: 16474 (%1.315:%6.01), avgs: 2 337: dt: 0.09, sse: 1436.3 (0.272, 47.0, 0.749), neg: 16558 (%1.332:%5.96), avgs: 2 338: dt: 0.09, sse: 1428.2 (0.272, 47.0, 0.749), neg: 16574 (%1.288:%5.86), avgs: 2 339: dt: 0.01, sse: 1426.7 (0.272, 47.0, 0.749), neg: 16583 (%1.280:%5.87), avgs: 2 vertex spacing 1.67 +- 1.42 (0.00-->19.80) (max @ vno 6965 --> 6966) face area 0.24 +- 0.44 (-0.81-->5.89) 340: dt: 0.00, sse: 1425.9 (0.272, 47.0, 0.749), neg: 16610 (%1.274:%5.86), avgs: 0 vertex spacing 1.67 +- 1.42 (0.00-->19.80) (max @ vno 6965 --> 6966) face area 0.24 +- 0.44 (-0.81-->5.89) vertex spacing 1.67 +- 1.42 (0.00-->19.80) (max @ vno 6965 --> 6966) face area 0.24 +- 0.44 (-0.81-->5.89) tol=1.8e+01, host=local, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization 341: dt: 28.93, sse: 399.6 (0.273, 46.9, 0.749), neg: 16451 (%1.163:%5.95), avgs: 32 342: dt: 2.47, sse: 394.4 (0.273, 46.8, 0.749), neg: 16413 (%1.132:%5.84), avgs: 32 343: dt: 0.29, sse: 405.8 (0.274, 46.9, 0.749), neg: 16458 (%1.194:%5.81), avgs: 32 344: dt: 0.29, sse: 420.6 (0.275, 46.9, 0.750), neg: 16455 (%1.275:%5.71), avgs: 32 345: dt: 0.29, sse: 434.8 (0.278, 47.0, 0.750), neg: 16406 (%1.354:%5.61), avgs: 32 346: dt: 0.29, sse: 447.2 (0.280, 47.1, 0.751), neg: 16443 (%1.430:%5.59), avgs: 32 347: dt: 0.29, sse: 457.2 (0.283, 47.1, 0.751), neg: 16471 (%1.497:%5.58), avgs: 32 348: dt: 0.29, sse: 465.1 (0.286, 47.2, 0.752), neg: 16480 (%1.555:%5.58), avgs: 32 349: dt: 0.29, sse: 472.8 (0.288, 47.2, 0.752), neg: 16515 (%1.607:%5.61), avgs: 32 350: dt: 0.29, sse: 479.8 (0.289, 47.3, 0.753), neg: 16537 (%1.651:%5.61), avgs: 32 vertex spacing 1.67 +- 1.43 (0.00-->18.42) (max @ vno 6965 --> 6966) face area 0.24 +- 0.45 (-8.24-->8.99) 351: dt: 0.29, sse: 486.0 (0.290, 47.4, 0.753), neg: 16574 (%1.685:%5.63), avgs: 32 352: dt: 0.29, sse: 491.6 (0.290, 47.4, 0.754), neg: 16622 (%1.712:%5.66), avgs: 32 353: dt: 6.97, sse: 489.4 (0.281, 47.6, 0.756), neg: 16760 (%1.653:%5.91), avgs: 32 vertex spacing 1.68 +- 1.44 (0.00-->14.61) (max @ vno 24318 --> 24759) face area 0.24 +- 0.45 (-3.62-->5.88) 354: dt: 3.19, sse: 467.9 (0.279, 47.5, 0.758), neg: 16699 (%1.524:%5.82), avgs: 8 355: dt: 2.00, sse: 441.4 (0.278, 47.5, 0.756), neg: 16695 (%1.377:%5.75), avgs: 8 356: dt: 1.88, sse: 433.4 (0.278, 47.4, 0.757), neg: 16683 (%1.329:%5.80), avgs: 8 357: dt: 1.97, sse: 426.3 (0.278, 47.4, 0.757), neg: 16690 (%1.286:%5.76), avgs: 8 358: dt: 0.15, sse: 431.4 (0.278, 47.4, 0.757), neg: 16730 (%1.314:%5.80), avgs: 8 359: dt: 0.15, sse: 436.5 (0.278, 47.5, 0.758), neg: 16730 (%1.341:%5.78), avgs: 8 360: dt: 0.15, sse: 439.9 (0.279, 47.5, 0.759), neg: 16715 (%1.360:%5.78), avgs: 8 vertex spacing 1.68 +- 1.45 (0.00-->14.36) (max @ vno 24318 --> 24759) face area 0.24 +- 0.45 (-1.22-->5.89) 361: dt: 0.15, sse: 442.8 (0.279, 47.5, 0.759), neg: 16734 (%1.375:%5.78), avgs: 8 362: dt: 0.15, sse: 443.5 (0.279, 47.6, 0.760), neg: 16735 (%1.379:%5.82), avgs: 8 363: dt: 0.15, sse: 442.9 (0.280, 47.6, 0.760), neg: 16742 (%1.375:%5.81), avgs: 8 364: dt: 0.15, sse: 441.0 (0.280, 47.6, 0.760), neg: 16766 (%1.365:%5.85), avgs: 8 365: dt: 0.15, sse: 438.1 (0.280, 47.6, 0.760), neg: 16799 (%1.348:%5.88), avgs: 8 366: dt: 0.15, sse: 435.4 (0.280, 47.6, 0.760), neg: 16792 (%1.333:%5.87), avgs: 8 367: dt: 0.15, sse: 433.9 (0.280, 47.6, 0.760), neg: 16778 (%1.323:%5.85), avgs: 8 368: dt: 1.70, sse: 429.0 (0.280, 47.6, 0.760), neg: 16688 (%1.294:%5.77), avgs: 8 vertex spacing 1.68 +- 1.45 (0.00-->14.15) (max @ vno 24318 --> 24759) face area 0.24 +- 0.45 (-1.43-->5.90) inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=160.707, avgs=0 005: dt: 0.9000, rms radial error=160.466, avgs=0 010: dt: 0.9000, rms radial error=159.940, avgs=0 015: dt: 0.9000, rms radial error=159.260, avgs=0 020: dt: 0.9000, rms radial error=158.484, avgs=0 025: dt: 0.9000, rms radial error=157.646, avgs=0 030: dt: 0.9000, rms radial error=156.760, avgs=0 035: dt: 0.9000, rms radial error=155.858, avgs=0 040: dt: 0.9000, rms radial error=154.947, avgs=0 045: dt: 0.9000, rms radial error=154.035, avgs=0 050: dt: 0.9000, rms radial error=153.126, avgs=0 055: dt: 0.9000, rms radial error=152.260, avgs=0 060: dt: 0.9000, rms radial error=151.412, avgs=0 065: dt: 0.9000, rms radial error=150.568, avgs=0 070: dt: 0.9000, rms radial error=149.730, avgs=0 075: dt: 0.9000, rms radial error=148.896, avgs=0 080: dt: 0.9000, rms radial error=148.067, avgs=0 085: dt: 0.9000, rms radial error=147.243, avgs=0 090: dt: 0.9000, rms radial error=146.424, avgs=0 095: dt: 0.9000, rms radial error=145.609, avgs=0 100: dt: 0.9000, rms radial error=144.799, avgs=0 105: dt: 0.9000, rms radial error=143.994, avgs=0 110: dt: 0.9000, rms radial error=143.194, avgs=0 115: dt: 0.9000, rms radial error=142.398, avgs=0 120: dt: 0.9000, rms radial error=141.607, avgs=0 125: dt: 0.9000, rms radial error=140.820, avgs=0 130: dt: 0.9000, rms radial error=140.039, avgs=0 135: dt: 0.9000, rms radial error=139.262, avgs=0 140: dt: 0.9000, rms radial error=138.490, avgs=0 145: dt: 0.9000, rms radial error=137.722, avgs=0 150: dt: 0.9000, rms radial error=136.958, avgs=0 155: dt: 0.9000, rms radial error=136.200, avgs=0 160: dt: 0.9000, rms radial error=135.445, avgs=0 165: dt: 0.9000, rms radial error=134.695, avgs=0 170: dt: 0.9000, rms radial error=133.950, avgs=0 175: dt: 0.9000, rms radial error=133.209, avgs=0 180: dt: 0.9000, rms radial error=132.472, avgs=0 185: dt: 0.9000, rms radial error=131.740, avgs=0 190: dt: 0.9000, rms radial error=131.012, avgs=0 195: dt: 0.9000, rms radial error=130.301, avgs=0 200: dt: 0.9000, rms radial error=129.594, avgs=0 205: dt: 0.9000, rms radial error=128.892, avgs=0 210: dt: 0.9000, rms radial error=128.194, avgs=0 215: dt: 0.9000, rms radial error=127.499, avgs=0 220: dt: 0.9000, rms radial error=126.809, avgs=0 225: dt: 0.9000, rms radial error=126.123, avgs=0 230: dt: 0.9000, rms radial error=125.441, avgs=0 235: dt: 0.9000, rms radial error=124.763, avgs=0 240: dt: 0.9000, rms radial error=124.088, avgs=0 245: dt: 0.9000, rms radial error=123.418, avgs=0 250: dt: 0.9000, rms radial error=122.751, avgs=0 255: dt: 0.9000, rms radial error=122.089, avgs=0 260: dt: 0.9000, rms radial error=121.430, avgs=0 265: dt: 0.9000, rms radial error=120.775, avgs=0 270: dt: 0.9000, rms radial error=120.124, avgs=0 275: dt: 0.9000, rms radial error=119.477, avgs=0 280: dt: 0.9000, rms radial error=118.834, avgs=0 285: dt: 0.9000, rms radial error=118.194, avgs=0 290: dt: 0.9000, rms radial error=117.558, avgs=0 295: dt: 0.9000, rms radial error=116.926, avgs=0 300: dt: 0.9000, rms radial error=116.297, avgs=0 spherical inflation complete. epoch 1 (K=20.0), pass 1, starting sse = 1894.37 integrating with navgs=32 and tol=3.200e+00 taking momentum steps... integrating with navgs=32 and tol=3.200e+00 integrating with navgs=32 and tol=3.200e+00 integrating with navgs=8 and tol=1.671e+00 taking momentum steps... integrating with navgs=8 and tol=1.671e+00 integrating with navgs=8 and tol=1.671e+00 integrating with navgs=2 and tol=9.648e-01 taking momentum steps... integrating with navgs=2 and tol=9.648e-01 integrating with navgs=2 and tol=9.648e-01 integrating with navgs=0 and tol=5.570e-01 pass 1 complete, delta sse/iter = 0.25/40 = 0.00618 epoch 2 (K=80.0), pass 1, starting sse = 415.15 integrating with navgs=32 and tol=3.200e+00 taking momentum steps... integrating with navgs=32 and tol=3.200e+00 integrating with navgs=32 and tol=3.200e+00 integrating with navgs=8 and tol=1.671e+00 taking momentum steps... integrating with navgs=8 and tol=1.671e+00 integrating with navgs=8 and tol=1.671e+00 integrat369: dt: 0.44, sse: 410.2 (0.280, 47.5, 0.760), neg: 16652 (%1.180:%5.60), avgs: 2 370: dt: 0.15, sse: 400.2 (0.280, 47.5, 0.760), neg: 16667 (%1.121:%5.57), avgs: 2 vertex spacing 1.68 +- 1.45 (0.00-->14.10) (max @ vno 24318 --> 24759) face area 0.24 +- 0.45 (-0.65-->5.91) 371: dt: 0.08, sse: 395.2 (0.280, 47.5, 0.760), neg: 16723 (%1.092:%5.64), avgs: 2 372: dt: 0.09, sse: 393.4 (0.280, 47.4, 0.760), neg: 16783 (%1.080:%5.71), avgs: 2 373: dt: 0.09, sse: 390.7 (0.280, 47.4, 0.760), neg: 16761 (%1.062:%5.71), avgs: 2 374: dt: 0.09, sse: 387.6 (0.281, 47.4, 0.760), neg: 16761 (%1.042:%5.76), avgs: 2 375: dt: 0.09, sse: 383.4 (0.281, 47.4, 0.760), neg: 16737 (%1.014:%5.73), avgs: 2 376: dt: 0.09, sse: 378.5 (0.281, 47.4, 0.760), neg: 16721 (%0.981:%5.71), avgs: 2 377: dt: 0.09, sse: 373.6 (0.281, 47.3, 0.760), neg: 16679 (%0.949:%5.71), avgs: 2 378: dt: 0.09, sse: 369.4 (0.281, 47.3, 0.760), neg: 16671 (%0.920:%5.76), avgs: 2 379: dt: 0.09, sse: 365.6 (0.281, 47.2, 0.760), neg: 16605 (%0.893:%5.73), avgs: 2 380: dt: 0.09, sse: 361.2 (0.282, 47.2, 0.760), neg: 16543 (%0.864:%5.66), avgs: 2 vertex spacing 1.68 +- 1.45 (0.00-->13.84) (max @ vno 24318 --> 24759) face area 0.24 +- 0.45 (-0.48-->5.93) 381: dt: 0.09, sse: 357.3 (0.282, 47.2, 0.760), neg: 16488 (%0.838:%5.61), avgs: 2 382: dt: 0.09, sse: 354.0 (0.282, 47.1, 0.760), neg: 16438 (%0.816:%5.61), avgs: 2 383: dt: 0.11, sse: 352.7 (0.282, 47.1, 0.760), neg: 16508 (%0.809:%5.66), avgs: 2 vertex spacing 1.68 +- 1.45 (0.00-->13.77) (max @ vno 24318 --> 24759) face area 0.24 +- 0.45 (-0.50-->5.93) 384: dt: 0.03, sse: 352.2 (0.282, 47.1, 0.760), neg: 16578 (%0.804:%5.66), avgs: 0 vertex spacing 1.68 +- 1.45 (0.00-->13.77) (max @ vno 24318 --> 24759) face area 0.24 +- 0.45 (-0.42-->5.93) tol=1.8e+01, host=local, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization 385: dt: 11.60, sse: 167.6 (0.281, 47.0, 0.760), neg: 16255 (%0.765:%5.46), avgs: 32 386: dt: 5.07, sse: 165.4 (0.281, 47.0, 0.760), neg: 16284 (%0.753:%5.38), avgs: 32 387: dt: 0.29, sse: 164.5 (0.281, 47.0, 0.760), neg: 16221 (%0.748:%5.38), avgs: 32 388: dt: 0.29, sse: 165.6 (0.282, 46.9, 0.760), neg: 16078 (%0.753:%5.34), avgs: 32 389: dt: 0.29, sse: 167.3 (0.282, 46.9, 0.760), neg: 15982 (%0.762:%5.32), avgs: 32 390: dt: 0.29, sse: 169.5 (0.282, 46.9, 0.760), neg: 15911 (%0.775:%5.33), avgs: 32 vertex spacing 1.68 +- 1.45 (0.00-->13.71) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-1.00-->5.93) 391: dt: 0.29, sse: 171.8 (0.282, 46.9, 0.761), neg: 15853 (%0.787:%5.32), avgs: 32 392: dt: 0.29, sse: 173.9 (0.282, 46.9, 0.761), neg: 15823 (%0.799:%5.34), avgs: 32 393: dt: 0.29, sse: 176.0 (0.282, 46.9, 0.761), neg: 15805 (%0.811:%5.38), avgs: 32 394: dt: 0.29, sse: 178.2 (0.282, 46.9, 0.761), neg: 15782 (%0.823:%5.39), avgs: 32 395: dt: 0.29, sse: 180.0 (0.282, 46.9, 0.761), neg: 15745 (%0.834:%5.39), avgs: 32 396: dt: 0.29, sse: 181.5 (0.282, 46.9, 0.761), neg: 15710 (%0.842:%5.37), avgs: 32 397: dt: 3.79, sse: 180.4 (0.282, 46.8, 0.761), neg: 15732 (%0.835:%5.34), avgs: 32 vertex spacing 1.68 +- 1.46 (0.00-->13.89) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-1.72-->5.93) 398: dt: 1.67, sse: 173.2 (0.282, 46.8, 0.761), neg: 15744 (%0.793:%5.31), avgs: 8 399: dt: 1.35, sse: 169.6 (0.282, 46.8, 0.761), neg: 15739 (%0.773:%5.28), avgs: 8 400: dt: 0.67, sse: 166.4 (0.282, 46.8, 0.761), neg: 15748 (%0.754:%5.25), avgs: 8 vertex spacing 1.68 +- 1.46 (0.00-->14.04) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.77-->5.93) 401: dt: 1.59, sse: 164.3 (0.282, 46.8, 0.761), neg: 15726 (%0.742:%5.33), avgs: 8 402: dt: 0.15, sse: 165.1 (0.282, 46.8, 0.761), neg: 15712 (%0.746:%5.33), avgs: 8 403: dt: 0.15, sse: 165.4 (0.282, 46.8, 0.761), neg: 15705 (%0.748:%5.32), avgs: 8 404: dt: 0.15, sse: 166.1 (0.282, 46.8, 0.761), neg: 15708 (%0.751:%5.33), avgs: 8 405: dt: 0.15, sse: 166.8 (0.282, 46.8, 0.761), neg: 15701 (%0.755:%5.32), avgs: 8 406: dt: 0.15, sse: 167.1 (0.282, 46.8, 0.761), neg: 15712 (%0.756:%5.35), avgs: 8 407: dt: 0.15, sse: 166.8 (0.282, 46.8, 0.761), neg: 15710 (%0.754:%5.36), avgs: 8 408: dt: 0.15, sse: 166.2 (0.283, 46.8, 0.761), neg: 15684 (%0.751:%5.35), avgs: 8 409: dt: 0.15, sse: 165.5 (0.283, 46.8, 0.761), neg: 15683 (%0.747:%5.38), avgs: 8 410: dt: 0.15, sse: 165.1 (0.283, 46.7, 0.761), neg: 15694 (%0.744:%5.40), avgs: 8 vertex spacing 1.68 +- 1.46 (0.00-->14.58) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.84-->5.94) 411: dt: 0.15, sse: 164.7 (0.283, 46.7, 0.761), neg: 15701 (%0.741:%5.42), avgs: 8 412: dt: 0.77, sse: 162.9 (0.283, 46.7, 0.761), neg: 15697 (%0.731:%5.36), avgs: 8 vertex spacing 1.68 +- 1.46 (0.00-->14.71) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.73-->5.94) 413: dt: 0.25, sse: 153.5 (0.283, 46.7, 0.761), neg: 15550 (%0.678:%5.12), avgs: 2 414: dt: 0.07, sse: 150.5 (0.283, 46.7, 0.761), neg: 15601 (%0.661:%5.09), avgs: 2 415: dt: 0.08, sse: 148.5 (0.283, 46.7, 0.761), neg: 15642 (%0.650:%5.10), avgs: 2 416: dt: 0.09, sse: 147.2 (0.283, 46.7, 0.761), neg: 15694 (%0.642:%5.17), avgs: 2 417: dt: 0.09, sse: 145.5 (0.283, 46.7, 0.761), neg: 15677 (%0.632:%5.16), avgs: 2 418: dt: 0.09, sse: 143.2 (0.283, 46.7, 0.761), neg: 15730 (%0.619:%5.20), avgs: 2 419: dt: 0.09, sse: 141.1 (0.283, 46.7, 0.761), neg: 15704 (%0.605:%5.18), avgs: 2 420: dt: 0.09, sse: 138.0 (0.283, 46.6, 0.761), neg: 15710 (%0.587:%5.19), avgs: 2 vertex spacing 1.68 +- 1.46 (0.00-->15.05) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.41-->5.95) 421: dt: 0.09, sse: 134.6 (0.283, 46.6, 0.761), neg: 15641 (%0.567:%5.10), avgs: 2 422: dt: 0.09, sse: 132.0 (0.283, 46.6, 0.761), neg: 15616 (%0.552:%5.09), avgs: 2 423: dt: 0.09, sse: 130.8 (0.283, 46.5, 0.761), neg: 15566 (%0.543:%5.03), avgs: 2 424: dt: 0.09, sse: 129.1 (0.283, 46.5, 0.761), neg: 15542 (%0.533:%4.99), avgs: 2 425: dt: 0.09, sse: 127.5 (0.284, 46.5, 0.761), neg: 15569 (%0.523:%5.06), avgs: 2 426: dt: 0.09, sse: 125.8 (0.284, 46.4, 0.762), neg: 15508 (%0.512:%5.01), avgs: 2 427: dt: 0.09, sse: 124.3 (0.284, 46.4, 0.761), neg: 15569 (%0.504:%5.01), avgs: 2 428: dt: 0.03, sse: 124.1 (0.284, 46.4, 0.762), neg: 15621 (%0.502:%5.00), avgs: 2 vertex spacing 1.68 +- 1.46 (0.00-->15.40) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.28-->5.95) 429: dt: 0.03, sse: 122.5 (0.284, 46.4, 0.762), neg: 15609 (%0.493:%5.03), avgs: 0 430: dt: 0.00, sse: 122.5 (0.284, 46.4, 0.762), neg: 15651 (%0.493:%5.07), avgs: 0 vertex spacing 1.68 +- 1.46 (0.00-->15.41) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.26-->5.95) vertex spacing 1.68 +- 1.46 (0.00-->15.41) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.26-->5.95) tol=1.8e+01, host=local, nav=32, nbrs=1, l_nlarea=1.000 using quadratic fit line minimization 431: dt: 5.68, sse: 92.4 (0.284, 46.4, 0.762), neg: 15520 (%0.485:%5.10), avgs: 32 432: dt: 0.29, sse: 92.5 (0.284, 46.4, 0.762), neg: 15450 (%0.485:%5.07), avgs: 32 433: dt: 0.29, sse: 93.7 (0.284, 46.4, 0.762), neg: 15385 (%0.493:%5.07), avgs: 32 434: dt: 0.29, sse: 95.9 (0.284, 46.4, 0.762), neg: 15344 (%0.505:%5.13), avgs: 32 435: dt: 0.29, sse: 98.3 (0.284, 46.4, 0.762), neg: 15305 (%0.519:%5.16), avgs: 32 436: dt: 0.29, sse: 100.6 (0.284, 46.4, 0.762), neg: 15311 (%0.533:%5.22), avgs: 32 437: dt: 0.29, sse: 102.9 (0.284, 46.4, 0.762), neg: 15306 (%0.546:%5.27), avgs: 32 438: dt: 0.29, sse: 104.9 (0.284, 46.4, 0.762), neg: 15274 (%0.559:%5.28), avgs: 32 439: dt: 0.29, sse: 106.6 (0.284, 46.4, 0.762), neg: 15270 (%0.569:%5.29), avgs: 32 440: dt: 0.29, sse: 108.4 (0.284, 46.4, 0.762), neg: 15260 (%0.580:%5.30), avgs: 32 vertex spacing 1.68 +- 1.46 (0.00-->15.72) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-1.25-->5.95) 441: dt: 0.29, sse: 110.2 (0.284, 46.4, 0.762), neg: 15257 (%0.591:%5.33), avgs: 32 442: dt: 4.01, sse: 109.8 (0.284, 46.4, 0.762), neg: 15270 (%0.588:%5.32), avgs: 32 vertex spacing 1.68 +- 1.46 (0.00-->15.71) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-1.09-->5.95) 443: dt: 1.52, sse: 104.1 (0.284, 46.4, 0.762), neg: 15265 (%0.553:%5.20), avgs: 8 444: dt: 0.82, sse: 101.2 (0.284, 46.4, 0.762), neg: 15250 (%0.535:%5.17), avgs: 8 445: dt: 0.20, sse: 100.4 (0.284, 46.4, 0.762), neg: 15266 (%0.530:%5.16), avgs: 8 446: dt: 0.15, sse: 101.5 (0.284, 46.4, 0.762), neg: 15292 (%0.537:%5.20), avgs: 8 447: dt: 0.15, sse: 102.3 (0.284, 46.4, 0.762), neg: 15316 (%0.541:%5.23), avgs: 8 448: dt: 0.15, sse: 102.6 (0.284, 46.4, 0.762), neg: 15298 (%0.543:%5.23), avgs: 8 449: dt: 0.15, sse: 102.8 (0.284, 46.3, 0.762), neg: 15296 (%0.544:%5.27), avgs: 8 450: dt: 0.15, sse: 102.7 (0.284, 46.3, 0.762), neg: 15298 (%0.543:%5.32), avgs: 8 vertex spacing 1.68 +- 1.46 (0.00-->15.81) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.53-->5.95) 451: dt: 0.15, sse: 102.1 (0.284, 46.3, 0.762), neg: 15284 (%0.540:%5.33), avgs: 8 452: dt: 0.15, sse: 101.6 (0.284, 46.3, 0.762), neg: 15259 (%0.537:%5.31), avgs: 8 453: dt: 0.15, sse: 100.9 (0.284, 46.3, 0.762), neg: 15220 (%0.533:%5.30), avgs: 8 454: dt: 0.15, sse: 100.6 (0.284, 46.3, 0.762), neg: 15207 (%0.531:%5.31), avgs: 8 455: dt: 0.15, sse: 100.3 (0.284, 46.3, 0.762), neg: 15179 (%0.529:%5.28), avgs: 8 456: dt: 0.99, sse: 99.6 (0.284, 46.3, 0.762), neg: 15193 (%0.524:%5.23), avgs: 8 vertex spacing 1.68 +- 1.46 (0.00-->15.91) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.43-->5.95) 457: dt: 0.13, sse: 95.1 (0.284, 46.3, 0.762), neg: 15126 (%0.498:%5.07), avgs: 2 458: dt: 0.07, sse: 92.4 (0.284, 46.2, 0.762), neg: 15164 (%0.483:%5.03), avgs: 2 459: dt: 0.08, sse: 90.7 (0.284, 46.2, 0.762), neg: 15185 (%0.473:%5.05), avgs: 2 460: dt: 0.09, sse: 89.3 (0.284, 46.2, 0.762), neg: 15184 (%0.465:%5.06), avgs: 2 vertex spacing 1.68 +- 1.46 (0.00-->15.94) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.33-->5.95) 461: dt: 0.05, sse: 88.3 (0.284, 46.2, 0.762), neg: 15230 (%0.460:%5.06), avgs: 2 462: dt: 0.08, sse: 87.4 (0.284, 46.2, 0.762), neg: 15293 (%0.455:%5.11), avgs: 2 463: dt: 0.05, sse: 86.5 (0.284, 46.2, 0.762), neg: 15294 (%0.449:%5.08), avgs: 2 464: dt: 0.08, sse: 85.6 (0.284, 46.2, 0.762), neg: 15309 (%0.444:%5.12), avgs: 2 465: dt: 0.05, sse: 85.1 (0.284, 46.2, 0.762), neg: 15335 (%0.442:%5.14), avgs: 2 466: dt: 0.09, sse: 83.9 (0.284, 46.2, 0.762), neg: 15254 (%0.435:%5.09), avgs: 2 467: dt: 0.09, sse: 82.4 (0.284, 46.2, 0.762), neg: 15266 (%0.427:%5.05), avgs: 2 468: dt: 0.09, sse: 81.5 (0.285, 46.1, 0.762), neg: 15243 (%0.422:%5.07), avgs: 2 469: dt: 0.09, sse: 79.8 (0.285, 46.1, 0.762), neg: 15198 (%0.412:%5.03), avgs: 2 470: dt: 0.09, sse: 78.3 (0.285, 46.1, 0.762), neg: 15204 (%0.404:%5.06), avgs: 2 vertex spacing 1.68 +- 1.46 (0.00-->16.15) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.25-->5.96) 471: dt: 0.09, sse: 77.5 (0.285, 46.1, 0.762), neg: 15165 (%0.399:%5.06), avgs: 2 472: dt: 0.09, sse: 76.2 (0.285, 46.0, 0.762), neg: 15168 (%0.392:%5.09), avgs: 2 473: dt: 0.09, sse: 74.7 (0.285, 46.0, 0.762), neg: 15159 (%0.383:%5.10), avgs: 2 474: dt: 0.09, sse: 74.9 (0.285, 46.0, 0.762), neg: 15144 (%0.385:%5.08), avgs: 2 475: dt: 0.09, sse: 73.1 (0.285, 46.0, 0.762), neg: 15154 (%0.375:%5.11), avgs: 2 476: dt: 0.08, sse: 72.0 (0.285, 46.0, 0.762), neg: 15188 (%0.369:%5.00), avgs: 2 477: dt: 0.05, sse: 71.2 (0.285, 46.0, 0.762), neg: 15204 (%0.364:%4.92), avgs: 2 478: dt: 0.00, sse: 71.2 (0.285, 46.0, 0.762), neg: 15204 (%0.364:%4.92), avgs: 2 vertex spacing 1.68 +- 1.46 (0.00-->16.48) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.24-->5.96) 479: dt: 0.01, sse: 71.0 (0.285, 46.0, 0.762), neg: 15276 (%0.363:%4.99), avgs: 0 vertex spacing 1.68 +- 1.46 (0.00-->16.48) (max @ vno 7780 --> 7797) face area 0.24 +- 0.45 (-0.24-->5.96) 479: dt: 0.00, sse: 1384.1 (0.285, 46.0, 0.762), neg: 15276 (%0.363:%4.99), avgs: 32 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.07 hours ing with navgs=2 and tol=9.648e-01 taking momentum steps... integrating with navgs=2 and tol=9.648e-01 integrating with navgs=2 and tol=9.648e-01 integrating with navgs=0 and tol=5.570e-01 pass 1 complete, delta sse/iter = 0.15/44 = 0.00344 epoch 3 (K=320.0), pass 1, starting sse = 174.60 integrating with navgs=32 and tol=3.200e+00 taking momentum steps... integrating with navgs=32 and tol=3.200e+00 integrating with navgs=32 and tol=3.200e+00 integrating with navgs=8 and tol=1.671e+00 taking momentum steps... integrating with navgs=8 and tol=1.671e+00 integrating with navgs=8 and tol=1.671e+00 integrating with navgs=2 and tol=9.648e-01 taking momentum steps... integrating with navgs=2 and tol=9.648e-01 integrating with navgs=2 and tol=9.648e-01 integrating with navgs=0 and tol=5.570e-01 pass 1 complete, delta sse/iter = 0.30/46 = 0.00649 epoch 4 (K=1280.0), pass 1, starting sse = 93.82 integrating with navgs=32 and tol=3.200e+00 taking momentum steps... integrating with navgs=32 and tol=3.200e+00 integrating with navgs=32 and tol=3.200e+00 integrating with navgs=8 and tol=1.671e+00 taking momentum steps... integrating with navgs=8 and tol=1.671e+00 integrating with navgs=8 and tol=1.671e+00 integrating with navgs=2 and tol=9.648e-01 taking momentum steps... integrating with navgs=2 and tol=9.648e-01 integrating with navgs=2 and tol=9.648e-01 integrating with navgs=0 and tol=5.570e-01 pass 1 complete, delta sse/iter = 0.24/49 = 0.00495 final distance error %100000.00 optimization complete. unfolding took 0.06 hours #-------------------------------------------- #@# Fix Topology lh Thu Jun 21 02:06:48 EDT 2007 cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated /home/richfrye/Desktop/MRI/sub089/sub089mri/scripts mris_fix_topology -mgz -sphere qsphere.nofix -ga sub089mri lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.41.2.1 2007/01/05 16:58:33 nicks Exp $ $Id: mrisurf.c,v 1.441.2.5 2006/11/29 20:28:16 nicks Exp $ before topology correction, eno=-305 (nv=37379, nf=75536, ne=113220, g=153) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 13 iterations marking ambiguous vertices... 35584 ambiguous faces found in tessellation segmenting defects... 35 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 4 into 0 -merging segment 5 into 0 -merging segment 31 into 0 -merging segment 22 into 21 31 defects to be corrected 0 vertices coincident vertex 25113: degenerate normal vertex 26622: degenerate normal vertex 28630: degenerate normal vertex 31525: degenerate normal vertex 25113: degenerate normal vertex 26622: degenerate normal vertex 28630: degenerate normal vertex 31525: degenerate normal vertex 25113: degenerate normal vertex 26622: degenerate normal vertex 28630: degenerate normal vertex 31525: degenerate normal Computing Initial Surface Statistics -face loglikelihood: -8.8994 (-4.4497) -vertex loglikelihood: -8.2166 (-4.1083) -normal dot loglikelihood: -3.4360 (-3.4360) -quad curv loglikelihood: -6.4670 (-3.2335) Total Loglikelihood : -27.0190 CORRECTING DEFECT 0 (vertices=16283, convex hull=3920) normal vector of length zero at vertex 18644 with 0 faces vertex 18644 has 0 face reading input surface /home/richfrye/Desktop/MRI/sub089/sub089mri/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Linux localhost.localdomain 2.6.9-55.ELsmp #1 SMP Fri Apr 20 16:36:54 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux recon-all exited with ERRORS at Thu Jun 21 12:07:42 EDT 2007