Hi,

I'm running freesurfer in Ubuntu hardy 2.6.24-19

I've ran into a problem with loading data tables in qdec.

I've followed the instructions in tutorial 2a and created associated data tables, but qdec always returned the error:

ERROR: QdecProject::VerifySubjects: Couldn't find subject '<sdi>' in SUBJECTS_DIR
sh: Syntax error: Bad fd number

I've even tried to load the tutorial example files, and had the same errors returned back to me,

please assist:

Here's the error output:

Loading data table /media/STORAGE/buckner_data/tutorial_subjs/group_analysis_tutorial/qdec/qdec.table.dat...

Number of columns:  189

fsid column:        1

Number of factors:  188

Number of subjects: 40

Reading discrete factor levels from config file /media/STORAGE/buckner_data/tutorial_subjs/group_analysis_tutorial/qdec/gender.levels...'Male','Female', done.

Data table /media/STORAGE/buckner_data/tutorial_subjs/group_analysis_tutorial/qdec/qdec.table.dat loaded.

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '004' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '008' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '017' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '021' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '032' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '039' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '040' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '045' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '049' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '067' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '073' in SUBJECTS_DIR

sh: Syntax error: Bad fd number

ERROR: QdecProject::VerifySubjects: Couldn't find subject '074' in SUBJECTS_DIR

Thanks

- David Qixiang Chen

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer