Hi Yoonho

 

That warning is usually benign. Does the recon finish ok?

Cheers

Bruce

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Yoonho Hwang
Sent: Friday, April 9, 2021 2:49 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] MCSRCH error using sample data (001.mgz and 002.mgz)

 

        External Email - Use Caution        

Hello FreeSurfer Developers,

I'm attempting to compute cortical thickness and to analyze it between groups.

So I perform "recon-all", but rather than using recon-all -all, some problems arise while performing each of the steps in it. These problems are as follwing.

 

sample-001.mgz and sample-002.mgz in /usr/local/freesurfer/subjects/ are used. What is this problem happening? 

IFLAG= -1  LINE SEARCH FAILED. SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 3 POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT TOLERANCESoutof QuasiNewtonEMA: 009: -log(p) =   -0.0  tol 0.000010

Resulting transform:

 1.09487  -0.03668   0.00057  -10.07315;

 0.03682   1.10413   0.22705  -54.96997;

-0.00899  -0.18307   0.95770   22.82867;

 0.00000   0.00000   0.00000   1.00000;


1) FreeSurfer version: freesurfer-linux-centos7_x86_64-7.1.1-20200723-8b40551
2) Platform: Ubuntu release 18.04.1
3) uname -a: Linux LABPC 5.4.0-70-generic #78~18.04.1-Ubuntu SMP Sat Mar 20 14:10:07 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached

 

Thank you very much.

 

Sincerely,

Yoonho



--

Hwang, Yoonho

Medical Image Processing Laboratory (MIPL),

Department of Biomedical Engineering, Yonsei University.

 

#218 Sanhak-Kwan, 1, Yeonsedae-gil, Heungeop-myeon, Wonju,

Gangwon-do, 26493, Republic of Korea.

 

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