On Sun, Jul 1, 2012 at 4:33 PM, j janssen <joost.janssen76@gmail.com> wrote:

Hi Martin,

thanks.

i changed 11298 to 11298_1 and got the same error. are you suggesting that some recon-all error may have happened because of the file names? no error messages were reported in any of the log files, all (cross-sectional and longitudinal) finished without error. does the error point to two intra-subject surfaces which should have the same # of vertices but do not have so? if so, which surfaces?

thanks,
-joost

On Fri, Jun 29, 2012 at 8:50 PM, Martin Reuter <mreuter@nmr.mgh.harvard.edu> wrote:

Hi Joost,

the tp id cannot be the same as the base id:

fsid fsid-base ISI_years Group Gender Age ICV
11298 11298 0 patient F 16 1441
11298_2 11298 1.83 patient F 17.92 1396

I am amazed that you were able to process it this way?

So either call the first time point
11298_1
or call the base 11298_base in both cases.

Also make sure your longitudinal processing is correct (I mean the
recon-all, not the post processing that you are trying here).

Best, Martin

On Fri, 2012-06-29 at 13:35 +0200, j janssen wrote:
> Hi (Martin),
>
> - version 5.1 (Ubuntu 64b)
> - command: long_mris_slopes --qdec ./qdec/long.qdec.table.n114.dat
> --meas thickness --hemi lh --do-avg --do-rate --do-pc1 --do-spc
> --do-stack --do-label --time ISI_years --qcache fsaverage
> - attached: first 3 lines of qdec table containing the info for
> subject 11298
> - attached: on screen error output.
> - i have 2 timepoints/subject.
>
> things go awry in the "SUBJECT 11298 Running Within-Subject GLM" step
> (see attachment):
>
> Reshaping mriglm->mask...
> ERROR: mri_reshape: number of elements cannot change
>
> what am i doing wrong?
>
> -joost
>

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