Hi All,


Was this issue solved?? I am getting the similar error but couldn't find a solution on the mailing list.


Fitting mesh to synthetic image from ASEG took 362.0884 seconds
Transforming points
Transforming points
set final LTA type to 1
ltaReadFile(subject/mri/transforms/T1_to_T2.v10.lta): can't open file
No such file or directory
Segmentation fault (core dumped)
freesurfer/bin//mri_concatenate_lta -out_type   1 subject/mri/transforms/T1_to_T2.v10.lta identity.nofile T1toT2.lta >/dev/null: Segmentation fault
Error using fgets
Invalid file identifier.  Use fopen to generate a valid file identifier.


Regards,


Prabesh

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Eugenio Iglesias <e.iglesias@bcbl.eu>
Sent: Monday, October 19, 2015 8:59:59 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] -hippocampal-subfields-T1T2
 
Hi Daniel,
sorry for the late reply; I was on vacation.
It seems that the T1-T2 registration failed. Can you please send me the .log files for the hippocampal subfields? They should be in the following directory:
media/orlandi/Ub4_Shared_HD/orlandi/PharmaCog-Volontari/CARTELLE-avg+base+long+T2/out_v5.3_35-MRIT1-VO-003-T01-avg.long.base_v5.3_35-MRIT1-VO-003/scripts/
Cheers,
Eugenio

Juan Eugenio Iglesias
Postdoctoral researcher BCBL
www.jeiglesias.com
www.bcbl.eu

Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer

From: "Daniele Orlandi" <daniele.orlandi.psy@gmail.com>
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Sent: Monday, October 12, 2015 6:58:34 PM
Subject: [Freesurfer] -hippocampal-subfields-T1T2

Dear All,
I'm trying to run the flag  -hippocampal-subfields-T1T2 with the new FS v6.0 but I get the following error:

>Fitting mesh to synthetic image from ASEG took 217.8633 seconds
>Transforming points
>Transforming points
>ltaReadFile(/media/orlandi/Ub4_Shared_HD/orlandi/PharmaCog-Volontari/CARTELLE-avg+base+long+T2/out_v5.3_35-MRIT1-VO-003-T01-avg.long.base_v5.3_35-MRIT1-VO-003/mri/transforms/T1_to_T1+T2.v10.lta): can't open file
>No such file or directory
>ERROR: Reading transform from file /media/orlandi/Ub4_Shared_HD/orlandi/PharmaCog-Volontari/CARTELLE-avg+base+long+T2/out_v5.3_35-MRIT1-VO-003-T01-avg.long.base_v5.3_35-MRIT1-VO-003/mri/transforms/T1_to_T1+T2.v10.lta

Do you have any suggestion?
thank you all for your collaboration
Daniele

_______________________________________________________________________________
 Daniele Orlandi, PsyD, Research Assistant
 Laboratory of Epidemiology, Neuroimaging Alzheimer
 IRCCS Centro San Giovanni di Dio, Fatebenefratelli
 Via Pilastroni 4
 25125 Brescia - Italy
 tel:+39 030/3501563
 cell: +39 3495119685


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