Dear Zheng,

You need to download the whole dev version, not just the script ;-)

Cheers,

/E

-- 

Juan Eugenio Iglesias

ERC Senior Research Fellow

Translational Imaging Group

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of 郑凤莲 <13181786167@163.com>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Thursday, 11 January 2018 at 11:20
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Amydala segmentation

Hi FS experts,

  I ran "segmentHA_T1.sh 0010006 $SUBJECTS_DIR" for amydala segmentations. But there is only hippocampal subfields, no amydala segmentation .txt file in mri file. 

  I ran ''recon-all'' in FS 6.0, and copy segmentHA_T1.sh and checkMCR to FREESURFER_HOME.  

  Why there is no files of amydala? 

 I am looking forward to your reply. Thank you very much.

Sincerely,

Zheng