Hi,

I am trying to use a LUT which picks out just one region of the segmentation, e.g.:

$ cat HCOnlyColorLUT.txt
#$Id: FreeSurferColorLUT.txt,v 1.70.2.7 2012/08/27 17:20:08 nicks Exp $

#No. Label Name:                            R   G   B   A

0   Unknown                                   0   0  0  255
17  Left-Hippocampus                        220 216 20  0

with which I expect the segmentation overlay to have only one yellow region corresponding to the left HC. I run the command line:

$ freeview -v T1.mgz aseg.mgz:colormap=lut:lut=HCOnlyColorLUT.txt

after which I am getting the overlay displayed as below. I must be doing something stupid, could you, please help me out?

Thanks

Tamás



-- 
Tamás Hauer
McMRI AG
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