Can you send pictures of the slices showing the problem?

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Hello FS developers,

 

I ran my subjects through skullstripping and recon-all. Everything processed correctly (and exited without errors), except 4 images which have an underestimation in coronal subcortical region. The underestimation is significant and goes on for about 10-12 slices (for one image it was 153-162, for another it was 150-164).

 

After searching the list, we attempted control points, which ended up not working (I don’t believe this was the right method to correct the error). Then we tried white matter edits, and one of the images was resolved, but the other 3 did not get better. Is there anything else we could do to try to resolve the issue? I can provide any other information needed. Any help would be appreciated!

 

1. Freesurfer version: FreeSurfer/7.1.1-centos7_x86_64
2. Operating System: Red Hat Enterprise Linux 7
3. OS Version: 7.9 (Maipo)

 

Best,

Maria

 

Maria Stǎnicǎ, B.A. | Graduate Student

Medical/Clinical Psychology Doctoral Program

UAB |The University of Alabama at Birmingham

mstanica@uab.edu

Pronouns: she/her/hers

 

 

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