Hi all,<br><br>I have an MPRAGE which consistently fails the Talairach quality check (see attached error) in autorecon1.&nbsp; (A 32-channel coil was used in this scan, and I suspect that might be a cause of the failure.)&nbsp; Per the wiki&#39;s suggestion, I have tried to manually fix the transform in tkregister2 and rerun reconstruction, but despite multiple attempts, I haven&#39;t been able to get a transform which satisfies the quality check.&nbsp; From similar list posts, I thought it might be possible for me to Talairach in an external program (BET, AFNI, etc.) and create a transform file that FreeSurfer can read.&nbsp; If this is possible, could you give me an overview of the process, or point me to existing documentation?<br>
<br>Thanks,<br><br>Jeff Phillips<br>