Dear all:
I installed Freesurfer, tested it with the recommended commands listed in
and encountered a problem only in tksurfer. When I hit
tksurfer yc (or bert) lh pial
I get two kinds of error messages:
can't find talairach file '/Volumes/Sophomore/ncku_KMU_fMRI/surfaces/yc/surf/../mri/orig/COR-.info/../transforms/talairach.xfm'
surfer: single buffered window
surfer: tkoInitWindow(yc)
surfer: using interface /Applications/freesurfer/lib/tcl/tksurfer.new.tcl
Error sourcing /Applications/freesurfer/lib/tcl/tksurfer.new.tcl:
can't read "env(MRI_DIR)": no such variable
I found both problems have been asked before (one at
another
and I tried to mimic the solution provided, but no luck so far. The problem persists. So I wonder if gurus in this forum might be kind enough to suggest some directions? I was baffled by this "small" problems for almost 1 week, so....
many thanks,
chun-chia
p.s., I checked the .xdebug_tksurfer returned empty files, and I am not sure where is the log file located...