It looks like a very patchy, warped version of the brain. I find that this is true for all subjects (/fsfast-functional/sess???/bold/001/fmcpr.up.sm5.mni305.2mm.nii.gz). I used both freeview and fslview to visualize the images.
yes, you would expect that. what does it look like? how are you
visualizing it?
> _______________________________________________
On 09/20/2012 06:18 PM, Andrew Bock wrote:
> Hello,
>
> I am attempting to run preproc-sess on my functional data, and am
> following the tutorial found here:
> http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastPreProc
>
> I downloaded the tutorial data, and find that when I view
> fmcpr.up.sm5.mni305.2mm.nii.gz it looks quite ugly (i.e. does not look
> like a brain). I would expect this file to look like the fsaverage
> brain, is that not correct?
>
> Andrew
>
>
>
>
>
>
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Douglas N. Greve, Ph.D.
MGH-NMR Center
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