Hi FreeSurfer
experts,
I am a beginner of
free surfer. Now I am working on my previous dataset with new hypothesis. In
this dataset, I found a ROI (located almost in gray matter) showed significant
functional difference between groups. I want to test whether the cortical
thickness is changed or not in this ROI. I have done "recon-all
-autorecon-all" and did some necessary check for data quality. However, I
met some problems:
1.
The ROI
dataset was from AFNI. How will I transfer into free surfer? Which command I can
use?
2. After ROI
transfered, what will I do to get the averaged cortical thickness from this
ROI? Are there some example or manual I can read and learn?
Thanks a
lot!
All the
best,