you can get that function from here
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mkcontrast2m.m
copy it to $FREESURFER_HOME/fsfast/toolbox

On 05/19/2016 10:55 AM, José Paredes Pacheco wrote:
> Hi Freesurfers
>
> I am doing FSFAST with my own data and have a problem. After I run
> mkanalysis-sess command succesfully, I try to run mkcontrast-sess
> command but I get an error during the process. The text in my terminal
> window is the following:
>
> root@usuario2:/home/usuario2...
> mkcontrast-sess -analysis event.sm5.lh -contrast NW-mayor-Rest -c 1 -a 2
>
> INFO: Found 2 Non-Null Conditions
> INFO: Found 1 Delays
> Condition Weights: -1.00000000000000000000 1.00000000000000000000
> mkcontrast2 -config event.sm5.lh/NW-mayor-Rest.config -anadir
> event.sm5.lh -wcond -1.00000000000000000000 1.00000000000000000000
> -sumconds -o event.sm5.lh/NW-mayor-Rest.mat -wdelay 1 -no-octave
>   $Id: mkcontrast2,v 1.2 2015/12/10 22:51:30 zkaufman Exp $
> cmtxfile  event.sm5.lh/NW-mayor-Rest.mat
> nconds    2,  wcond  -1.00000000000000000000 1.00000000000000000000
> ndelays   1, wdelay 1
> ndelays   1, wpsa
> sumconds  1
> sumdelays 0
> nircorr   0
> TER       0.050000
> rdelta
> rtau
>   cmtxfile  event.sm5.lh/NW-mayor-Rest.mat
>   monly  0
>   NCond   2
>   WCond   -1.00000000000000000000 1.00000000000000000000
>   NDelay  1
>   WDelay  1
>   TER         0.050000
>   sumconds   1
>   sumdelays  0
>   nircorr  0
>   TPreStim  0
>   RmPreStim  0
>   rdelta     0 0
>   rtau       0 0
>   ndelays    1
>   CNorm      1
>   setwdelay  0
>   setwcond   0
> Matlab file is /tmp/mkcontrast2.10601.m
> MATLAB is selecting SOFTWARE OPENGL rendering.
>
>                             < M A T L A B (R) >
>                   Copyright 1984-2015 The MathWorks, Inc.
>                    R2015b (8.6.0.267246) 64-bit (glnxa64)
>                               August 20, 2015
>
> To get started, type one of these: helpwin, helpdesk, or demo.
> For product information, visit www.mathworks.com

> <http://www.mathworks.com>.
>
> Academic License
>
> >> Undefined function or variable 'mkcontrast2m'.
> >> jue may 19 16:28:24 CEST 2016
> root@usuario2:/home/usuario2...
>
> It doesn't find the function or variable 'mkcontrast2m' and I don't
> know what I have to do.
>
> Can somebody help me?
>
> Thanks you in advance.
>
> All the best,
>
> José
>
>
> _______________________________________________
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> Freesurfer@nmr.mgh.harvard.edu
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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