Hello freesurfer Team,
I have the grey matter segmentation from FSL and I have freesurfer recon-all output but the recon-all outputs do not have regional grey matter intensities. Can I use MRI_segstats to calculate the regional grey matter output using the FSL grey matter segmentation and the recon-all subject hemi parc and subject hemi labels to get the various brain parts and labels for the grey matter?