Thanks Doug.

Here are some images from tkmedit.

J

----- Original Message -----
From: "Douglas N Greve" <greve@nmr.mgh.harvard.edu>
To: <fji@iinet.net.au>
Cc: <freesurfer@nmr.mgh.harvard.edu>
Sent: Wednesday, October 21, 2009 12:43 AM
Subject: Re: [Freesurfer] mgz file is tilted


> probably not (though supplying images would have been helpful). When
> viewing in tkmedit, tkmedit aligns the view port axes along the scanner
> coordinates, not the image coords.
>
> doug
>
> Jay Ives wrote:
>> My nii files look straight in FSLView, but after converting them to
>> mgz with mri_convert, they are tilted a bit to one side and slightly
>> forwards when viewed with tkmedit.
>> Have I done something wrong, or omitted a necessary command?
>> Thx
>>
>> ------------------------------------------------------------------------
>>
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> In order to help us help you, please follow the steps in:
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)