This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Freesurfer configure dev5, which was generated by GNU Autoconf 2.59. Invocation command line was $ ./configure --disable-all-apps --disable-gl-apps --disable-tcltk-apps -with-mni-dir=/export/minc-1.4/ --with-vxl-dir=/export/vxl-1.13.0 ## --------- ## ## Platform. ## ## --------- ## hostname = login002 uname -m = x86_64 uname -r = 2.6.18-274.12.1.el5 uname -s = Linux uname -v = #1 SMP Tue Nov 8 21:37:35 EST 2011 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib64/qt-3.3/bin PATH: /export/openmpi-1.4.3/bin PATH: /usr/kerberos/sbin PATH: /usr/kerberos/bin PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /sbin PATH: /bin PATH: /usr/sbin PATH: /usr/bin PATH: /export/gromacs-4.5.3/bin/ PATH: /export/intel/Compiler/12.0/bin PATH: /root/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1653: Setting System... configure:1662: checking build system type configure:1680: result: x86_64-redhat-linux-gnu configure:1688: checking host system type configure:1702: result: x86_64-redhat-linux-gnu configure:1710: checking target system type configure:1724: result: x86_64-redhat-linux-gnu configure:1763: checking AMD Open64 compiler directories configure:1803: result: Open64 directory is not supplied configure:1908: checking for a BSD-compatible install configure:1963: result: /usr/bin/install -c configure:1974: checking whether build environment is sane configure:2017: result: yes configure:2082: checking for gawk configure:2098: found /bin/gawk configure:2108: result: gawk configure:2118: checking whether make sets $(MAKE) configure:2138: result: yes configure:2301: checking how to create a ustar tar archive configure:2314: tar --version tar (GNU tar) 1.15.1 configure:2317: $? = 0 configure:2357: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar configure:2360: $? = 0 configure:2364: tar -xf - &5 g++ (GCC) 4.1.2 20080704 (Red Hat 4.1.2-51) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2508: $? = 0 configure:2510: g++ -v &5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --disable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-51) configure:2513: $? = 0 configure:2515: g++ -V &5 g++: '-V' option must have argument configure:2518: $? = 1 configure:2541: checking for C++ compiler default output file name configure:2544: g++ conftest.cc >&5 configure:2547: $? = 0 configure:2593: result: a.out configure:2598: checking whether the C++ compiler works configure:2604: ./a.out configure:2607: $? = 0 configure:2624: result: yes configure:2631: checking whether we are cross compiling configure:2633: result: no configure:2636: checking for suffix of executables configure:2638: g++ -o conftest conftest.cc >&5 configure:2641: $? = 0 configure:2666: result: configure:2672: checking for suffix of object files configure:2693: g++ -c conftest.cc >&5 configure:2696: $? = 0 configure:2718: result: o configure:2722: checking whether we are using the GNU C++ compiler configure:2746: g++ -c conftest.cc >&5 configure:2752: $? = 0 configure:2756: test -z || test ! -s conftest.err configure:2759: $? = 0 configure:2762: test -s conftest.o configure:2765: $? = 0 configure:2778: result: yes configure:2784: checking whether g++ accepts -g configure:2805: g++ -c -g conftest.cc >&5 configure:2811: $? = 0 configure:2815: test -z || test ! -s conftest.err configure:2818: $? = 0 configure:2821: test -s conftest.o configure:2824: $? = 0 configure:2835: result: yes configure:2877: g++ -c conftest.cc >&5 configure:2883: $? = 0 configure:2887: test -z || test ! -s conftest.err configure:2890: $? = 0 configure:2893: test -s conftest.o configure:2896: $? = 0 configure:2922: g++ -c conftest.cc >&5 conftest.cc: In function 'int main()': conftest.cc:15: error: 'exit' was not declared in this scope configure:2928: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | /* end confdefs.h. */ | | int | main () | { | exit (42); | ; | return 0; | } configure:2877: g++ -c conftest.cc >&5 configure:2883: $? = 0 configure:2887: test -z || test ! -s conftest.err configure:2890: $? = 0 configure:2893: test -s conftest.o configure:2896: $? = 0 configure:2922: g++ -c conftest.cc >&5 configure:2928: $? = 0 configure:2932: test -z || test ! -s conftest.err configure:2935: $? = 0 configure:2938: test -s conftest.o configure:2941: $? = 0 configure:2975: checking for style of include used by make configure:3003: result: GNU configure:3031: checking dependency style of g++ configure:3121: result: gcc3 configure:3142: checking for gawk configure:3168: result: gawk configure:3224: checking for gcc configure:3240: found /usr/bin/gcc configure:3250: result: gcc configure:3494: checking for C compiler version configure:3497: gcc --version &5 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-51) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3500: $? = 0 configure:3502: gcc -v &5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --disable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-51) configure:3505: $? = 0 configure:3507: gcc -V &5 gcc: '-V' option must have argument configure:3510: $? = 1 configure:3513: checking whether we are using the GNU C compiler configure:3537: gcc -c conftest.c >&5 configure:3543: $? = 0 configure:3547: test -z || test ! -s conftest.err configure:3550: $? = 0 configure:3553: test -s conftest.o configure:3556: $? = 0 configure:3569: result: yes configure:3575: checking whether gcc accepts -g configure:3596: gcc -c -g conftest.c >&5 configure:3602: $? = 0 configure:3606: test -z || test ! -s conftest.err configure:3609: $? = 0 configure:3612: test -s conftest.o configure:3615: $? = 0 configure:3626: result: yes configure:3643: checking for gcc option to accept ANSI C configure:3713: gcc -c conftest.c >&5 configure:3719: $? = 0 configure:3723: test -z || test ! -s conftest.err configure:3726: $? = 0 configure:3729: test -s conftest.o configure:3732: $? = 0 configure:3750: result: none needed configure:3768: gcc -c conftest.c >&5 conftest.c:2: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me' configure:3774: $? = 1 configure: failed program was: | #ifndef __cplusplus | choke me | #endif configure:3909: checking dependency style of gcc configure:3999: result: gcc3 configure:4021: checking how to run the C preprocessor configure:4056: gcc -E conftest.c configure:4062: $? = 0 configure:4094: gcc -E conftest.c conftest.c:14:28: error: ac_nonexistent.h: No such file or directory configure:4100: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | /* end confdefs.h. */ | #include configure:4139: result: gcc -E configure:4163: gcc -E conftest.c configure:4169: $? = 0 configure:4201: gcc -E conftest.c conftest.c:14:28: error: ac_nonexistent.h: No such file or directory configure:4207: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | /* end confdefs.h. */ | #include configure:4263: checking for a BSD-compatible install configure:4318: result: /usr/bin/install -c configure:4329: checking whether ln -s works configure:4333: result: yes configure:4340: checking whether make sets $(MAKE) configure:4360: result: yes configure:4441: checking for a sed that does not truncate output configure:4495: result: /bin/sed configure:4498: checking for egrep configure:4508: result: grep -E configure:4524: checking for ld used by gcc configure:4591: result: /usr/bin/ld configure:4600: checking if the linker (/usr/bin/ld) is GNU ld configure:4615: result: yes configure:4620: checking for /usr/bin/ld option to reload object files configure:4627: result: -r configure:4636: checking for BSD-compatible nm configure:4678: result: /usr/bin/nm -B configure:4682: checking how to recognise dependent libraries configure:4882: result: file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib ) configure:4967: gcc -c conftest.c >&5 configure:4970: $? = 0 configure:5092: checking for ANSI C header files configure:5117: gcc -c conftest.c >&5 configure:5123: $? = 0 configure:5127: test -z || test ! -s conftest.err configure:5130: $? = 0 configure:5133: test -s conftest.o configure:5136: $? = 0 configure:5225: gcc -o conftest conftest.c >&5 conftest.c: In function 'main': conftest.c:31: warning: incompatible implicit declaration of built-in function 'exit' configure:5228: $? = 0 configure:5230: ./conftest configure:5233: $? = 0 configure:5248: result: yes configure:5272: checking for sys/types.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5272: checking for sys/stat.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5272: checking for stdlib.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5272: checking for string.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5272: checking for memory.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5272: checking for strings.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5272: checking for inttypes.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5272: checking for stdint.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5272: checking for unistd.h configure:5288: gcc -c conftest.c >&5 configure:5294: $? = 0 configure:5298: test -z || test ! -s conftest.err configure:5301: $? = 0 configure:5304: test -s conftest.o configure:5307: $? = 0 configure:5318: result: yes configure:5344: checking dlfcn.h usability configure:5356: gcc -c conftest.c >&5 configure:5362: $? = 0 configure:5366: test -z || test ! -s conftest.err configure:5369: $? = 0 configure:5372: test -s conftest.o configure:5375: $? = 0 configure:5385: result: yes configure:5389: checking dlfcn.h presence configure:5399: gcc -E conftest.c configure:5405: $? = 0 configure:5425: result: yes configure:5460: checking for dlfcn.h configure:5467: result: yes configure:5485: checking how to run the C++ preprocessor configure:5516: g++ -E conftest.cc configure:5522: $? = 0 configure:5554: g++ -E conftest.cc conftest.cc:25:28: error: ac_nonexistent.h: No such file or directory configure:5560: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:5599: result: g++ -E configure:5623: g++ -E conftest.cc configure:5629: $? = 0 configure:5661: g++ -E conftest.cc conftest.cc:25:28: error: ac_nonexistent.h: No such file or directory configure:5667: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:5762: checking for g77 configure:5778: found /usr/bin/g77 configure:5788: result: g77 configure:5803: checking for Fortran 77 compiler version configure:5806: g77 --version &5 GNU Fortran (GCC) 3.4.6 20060404 (Red Hat 3.4.6-4.1) Copyright (C) 2006 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. configure:5809: $? = 0 configure:5811: g77 -v &5 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.6/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,f77 --disable-libgcj --host=x86_64-redhat-linux Thread model: posix gcc version 3.4.6 20060404 (Red Hat 3.4.6-4.1) configure:5814: $? = 0 configure:5816: g77 -V &5 g77: `-V' option must have argument configure:5819: $? = 1 configure:5827: checking whether we are using the GNU Fortran 77 compiler configure:5841: g77 -c conftest.F >&5 configure:5847: $? = 0 configure:5851: test -z || test ! -s conftest.err configure:5854: $? = 0 configure:5857: test -s conftest.o configure:5860: $? = 0 configure:5873: result: yes configure:5879: checking whether g77 accepts -g configure:5891: g77 -c -g conftest.f >&5 configure:5897: $? = 0 configure:5901: test -z || test ! -s conftest.err configure:5904: $? = 0 configure:5907: test -s conftest.o configure:5910: $? = 0 configure:5922: result: yes configure:5952: checking the maximum length of command line arguments configure:6011: result: 32768 configure:6022: checking command to parse /usr/bin/nm -B output from gcc object configure:6111: gcc -c conftest.c >&5 configure:6114: $? = 0 configure:6118: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGISTW][ABCDGISTW]*\)[ ][ ]*\(\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p' \> conftest.nm configure:6121: $? = 0 configure:6173: gcc -o conftest conftest.c conftstm.o >&5 configure:6176: $? = 0 configure:6214: result: ok configure:6218: checking for objdir configure:6233: result: .libs configure:6326: checking for ar configure:6342: found /usr/bin/ar configure:6353: result: ar configure:6406: checking for ranlib configure:6422: found /usr/bin/ranlib configure:6433: result: ranlib configure:6486: checking for strip configure:6502: found /usr/bin/strip configure:6513: result: strip configure:6567: checking for file configure:6620: result: /usr/bin/file configure:6775: checking if gcc static flag works configure:6798: result: yes configure:6819: checking if gcc supports -fno-rtti -fno-exceptions configure:6837: gcc -c -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C configure:6841: $? = 0 configure:6852: result: no configure:6867: checking for gcc option to produce PIC configure:7044: result: -fPIC configure:7051: checking if gcc PIC flag -fPIC works configure:7069: gcc -c -fPIC -DPIC conftest.c >&5 configure:7073: $? = 0 configure:7084: result: yes configure:7108: checking if gcc supports -c -o file.o configure:7136: gcc -c -o out/conftest2.o conftest.c >&5 configure:7140: $? = 0 configure:7157: result: yes configure:7183: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:8011: result: yes configure:8082: checking how to hardcode library paths into programs configure:8107: result: immediate configure:8121: checking whether stripping libraries is possible configure:8126: result: yes configure:8148: checking dynamic linker characteristics configure:8659: result: GNU/Linux ld.so configure:9471: checking if libtool supports shared libraries configure:9473: result: yes configure:9476: checking whether to build shared libraries configure:9539: result: yes configure:9542: checking whether to build static libraries configure:9546: result: yes configure:9637: creating libtool configure:10184: checking for ld used by g++ configure:10251: result: /usr/bin/ld -m elf_x86_64 configure:10260: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:10275: result: no configure:10326: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:11155: result: yes configure:11177: g++ -c conftest.cc >&5 configure:11180: $? = 0 configure:11276: checking for g++ option to produce PIC configure:11528: result: -fPIC configure:11535: checking if g++ PIC flag -fPIC works configure:11553: g++ -c -fPIC -DPIC conftest.cc >&5 configure:11557: $? = 0 configure:11568: result: yes configure:11592: checking if g++ supports -c -o file.o configure:11620: g++ -c -o out/conftest2.o conftest.cc >&5 configure:11624: $? = 0 configure:11641: result: yes configure:11667: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:11692: result: yes configure:11763: checking how to hardcode library paths into programs configure:11788: result: immediate configure:11802: checking whether stripping libraries is possible configure:11807: result: yes configure:11829: checking dynamic linker characteristics configure:12340: result: GNU/Linux ld.so configure:13628: checking if libtool supports shared libraries configure:13630: result: yes configure:13633: checking whether to build shared libraries configure:13651: result: yes configure:13654: checking whether to build static libraries configure:13658: result: yes configure:13670: checking for g77 option to produce PIC configure:13847: result: -fPIC configure:13854: checking if g77 PIC flag -fPIC works configure:13872: g77 -c -g -O2 -fPIC conftest.f >&5 configure:13876: $? = 0 configure:13887: result: yes configure:13911: checking if g77 supports -c -o file.o configure:13939: g77 -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:13943: $? = 0 configure:13960: result: yes configure:13986: checking whether the g77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14794: result: yes configure:14865: checking how to hardcode library paths into programs configure:14890: result: immediate configure:14904: checking whether stripping libraries is possible configure:14909: result: yes configure:14931: checking dynamic linker characteristics configure:15442: result: GNU/Linux ld.so configure:19557: checking for Fortran 77 compiler version configure:19560: g77 --version &5 GNU Fortran (GCC) 3.4.6 20060404 (Red Hat 3.4.6-4.1) Copyright (C) 2006 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING or type the command `info -f g77 Copying'. configure:19563: $? = 0 configure:19565: g77 -v &5 Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.6/specs Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-languages=c,c++,f77 --disable-libgcj --host=x86_64-redhat-linux Thread model: posix gcc version 3.4.6 20060404 (Red Hat 3.4.6-4.1) configure:19568: $? = 0 configure:19570: g77 -V &5 g77: `-V' option must have argument configure:19573: $? = 1 configure:19581: checking whether we are using the GNU Fortran 77 compiler configure:19627: result: yes configure:19633: checking whether g77 accepts -g configure:19676: result: yes configure:19729: checking for dirent.h that defines DIR configure:19753: gcc -c conftest.c >&5 configure:19759: $? = 0 configure:19763: test -z || test ! -s conftest.err configure:19766: $? = 0 configure:19769: test -s conftest.o configure:19772: $? = 0 configure:19783: result: yes configure:19796: checking for library containing opendir configure:19826: gcc -o conftest conftest.c >&5 configure:19832: $? = 0 configure:19836: test -z || test ! -s conftest.err configure:19839: $? = 0 configure:19842: test -s conftest configure:19845: $? = 0 configure:19915: result: none required configure:20051: checking for ANSI C header files configure:20207: result: yes configure:20217: checking for sys/wait.h that is POSIX.1 compatible configure:20248: gcc -c conftest.c >&5 configure:20254: $? = 0 configure:20258: test -z || test ! -s conftest.err configure:20261: $? = 0 configure:20264: test -s conftest.o configure:20267: $? = 0 configure:20278: result: yes configure:20345: checking arpa/inet.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking arpa/inet.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for arpa/inet.h configure:20468: result: yes configure:20345: checking fcntl.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking fcntl.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for fcntl.h configure:20468: result: yes configure:20345: checking float.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking float.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for float.h configure:20468: result: yes configure:20345: checking limits.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking limits.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for limits.h configure:20468: result: yes configure:20345: checking locale.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking locale.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for locale.h configure:20468: result: yes configure:20345: checking malloc.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking malloc.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for malloc.h configure:20468: result: yes configure:20336: checking for memory.h configure:20341: result: yes configure:20345: checking netdb.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking netdb.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for netdb.h configure:20468: result: yes configure:20345: checking netinet/in.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking netinet/in.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for netinet/in.h configure:20468: result: yes configure:20345: checking stddef.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking stddef.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for stddef.h configure:20468: result: yes configure:20336: checking for stdlib.h configure:20341: result: yes configure:20336: checking for string.h configure:20341: result: yes configure:20336: checking for strings.h configure:20341: result: yes configure:20345: checking sys/file.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking sys/file.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for sys/file.h configure:20468: result: yes configure:20345: checking sys/ioctl.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking sys/ioctl.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for sys/ioctl.h configure:20468: result: yes configure:20345: checking sys/param.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking sys/param.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for sys/param.h configure:20468: result: yes configure:20345: checking sys/socket.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking sys/socket.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for sys/socket.h configure:20468: result: yes configure:20345: checking sys/time.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking sys/time.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for sys/time.h configure:20468: result: yes configure:20345: checking sys/timeb.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking sys/timeb.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for sys/timeb.h configure:20468: result: yes configure:20336: checking for unistd.h configure:20341: result: yes configure:20345: checking values.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking values.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for values.h configure:20468: result: yes configure:20345: checking wctype.h usability configure:20357: gcc -c conftest.c >&5 configure:20363: $? = 0 configure:20367: test -z || test ! -s conftest.err configure:20370: $? = 0 configure:20373: test -s conftest.o configure:20376: $? = 0 configure:20386: result: yes configure:20390: checking wctype.h presence configure:20400: gcc -E conftest.c configure:20406: $? = 0 configure:20426: result: yes configure:20461: checking for wctype.h configure:20468: result: yes configure:20488: checking for sys/types.h configure:20493: result: yes configure:20488: checking for stdint.h configure:20493: result: yes configure:20637: checking for an ANSI C-conforming const configure:20704: gcc -c conftest.c >&5 configure:20710: $? = 0 configure:20714: test -z || test ! -s conftest.err configure:20717: $? = 0 configure:20720: test -s conftest.o configure:20723: $? = 0 configure:20734: result: yes configure:20744: checking for inline configure:20765: gcc -c conftest.c >&5 configure:20771: $? = 0 configure:20775: test -z || test ! -s conftest.err configure:20778: $? = 0 configure:20781: test -s conftest.o configure:20784: $? = 0 configure:20796: result: inline configure:20815: checking for mode_t configure:20839: gcc -c conftest.c >&5 configure:20845: $? = 0 configure:20849: test -z || test ! -s conftest.err configure:20852: $? = 0 configure:20855: test -s conftest.o configure:20858: $? = 0 configure:20869: result: yes configure:20881: checking for off_t configure:20905: gcc -c conftest.c >&5 configure:20911: $? = 0 configure:20915: test -z || test ! -s conftest.err configure:20918: $? = 0 configure:20921: test -s conftest.o configure:20924: $? = 0 configure:20935: result: yes configure:20947: checking for size_t configure:20971: gcc -c conftest.c >&5 configure:20977: $? = 0 configure:20981: test -z || test ! -s conftest.err configure:20984: $? = 0 configure:20987: test -s conftest.o configure:20990: $? = 0 configure:21001: result: yes configure:21013: checking whether time.h and sys/time.h may both be included configure:21038: gcc -c conftest.c >&5 configure:21044: $? = 0 configure:21048: test -z || test ! -s conftest.err configure:21051: $? = 0 configure:21054: test -s conftest.o configure:21057: $? = 0 configure:21068: result: yes configure:21078: checking whether struct tm is in sys/time.h or time.h configure:21101: gcc -c conftest.c >&5 configure:21107: $? = 0 configure:21111: test -z || test ! -s conftest.err configure:21114: $? = 0 configure:21117: test -s conftest.o configure:21120: $? = 0 configure:21131: result: time.h configure:21141: checking for ptrdiff_t configure:21165: gcc -c conftest.c >&5 configure:21171: $? = 0 configure:21175: test -z || test ! -s conftest.err configure:21178: $? = 0 configure:21181: test -s conftest.o configure:21184: $? = 0 configure:21195: result: yes configure:21211: checking whether closedir returns void configure:21240: gcc -o conftest conftest.c >&5 configure:21243: $? = 0 configure:21245: ./conftest configure:21248: $? = 0 configure:21262: result: no configure:21272: checking for error_at_line configure:21293: gcc -o conftest conftest.c >&5 configure:21299: $? = 0 configure:21303: test -z || test ! -s conftest.err configure:21306: $? = 0 configure:21309: test -s conftest configure:21312: $? = 0 configure:21324: result: yes configure:21337: checking whether lstat dereferences a symlink specified with a trailing slash configure:21368: gcc -o conftest conftest.c >&5 configure:21371: $? = 0 configure:21373: ./conftest configure:21376: $? = 0 configure:21397: result: yes configure:21418: checking whether lstat accepts an empty string configure:21443: gcc -o conftest conftest.c >&5 configure:21446: $? = 0 configure:21448: ./conftest configure:21451: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | int | main () | { | struct stat sbuf; | exit (lstat ("", &sbuf) ? 1 : 0); | ; | return 0; | } configure:21465: result: no configure:21483: checking whether lstat dereferences a symlink specified with a trailing slash configure:21543: result: yes configure:21570: checking for stdlib.h configure:21575: result: yes configure:21570: checking for unistd.h configure:21575: result: yes configure:21719: checking for getpagesize configure:21776: gcc -o conftest conftest.c >&5 configure:21782: $? = 0 configure:21786: test -z || test ! -s conftest.err configure:21789: $? = 0 configure:21792: test -s conftest configure:21795: $? = 0 configure:21807: result: yes configure:21817: checking for working mmap configure:21959: gcc -o conftest conftest.c >&5 configure:21962: $? = 0 configure:21964: ./conftest configure:21967: $? = 0 configure:21981: result: yes configure:22007: checking sys/select.h usability configure:22019: gcc -c conftest.c >&5 configure:22025: $? = 0 configure:22029: test -z || test ! -s conftest.err configure:22032: $? = 0 configure:22035: test -s conftest.o configure:22038: $? = 0 configure:22048: result: yes configure:22052: checking sys/select.h presence configure:22062: gcc -E conftest.c configure:22068: $? = 0 configure:22088: result: yes configure:22123: checking for sys/select.h configure:22130: result: yes configure:21998: checking for sys/socket.h configure:22003: result: yes configure:22143: checking types of arguments for select configure:22176: gcc -c conftest.c >&5 configure:22182: $? = 0 configure:22186: test -z || test ! -s conftest.err configure:22189: $? = 0 configure:22192: test -s conftest.o configure:22195: $? = 0 configure:22211: result: int,fd_set *,struct timeval * configure:22234: checking return type of signal handlers configure:22265: gcc -c conftest.c >&5 configure:22271: $? = 0 configure:22275: test -z || test ! -s conftest.err configure:22278: $? = 0 configure:22281: test -s conftest.o configure:22284: $? = 0 configure:22295: result: void configure:22303: checking whether stat accepts an empty string configure:22328: gcc -o conftest conftest.c >&5 configure:22331: $? = 0 configure:22333: ./conftest configure:22336: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | int | main () | { | struct stat sbuf; | exit (stat ("", &sbuf) ? 1 : 0); | ; | return 0; | } configure:22350: result: no configure:22368: checking for working strtod configure:22411: gcc -o conftest conftest.c >&5 conftest.c: In function 'main': conftest.c:78: warning: incompatible implicit declaration of built-in function 'exit' conftest.c:88: warning: incompatible implicit declaration of built-in function 'exit' conftest.c:90: warning: incompatible implicit declaration of built-in function 'exit' configure:22414: $? = 0 configure:22416: ./conftest configure:22419: $? = 0 configure:22433: result: yes configure:22615: checking for vprintf configure:22672: gcc -o conftest conftest.c >&5 conftest.c:90: warning: conflicting types for built-in function 'vprintf' configure:22678: $? = 0 configure:22682: test -z || test ! -s conftest.err configure:22685: $? = 0 configure:22688: test -s conftest configure:22691: $? = 0 configure:22703: result: yes configure:22710: checking for _doprnt configure:22767: gcc -o conftest conftest.c >&5 /tmp/ccMnwt7u.o: In function `main': conftest.c:(.text+0xd): undefined reference to `_doprnt' /tmp/ccMnwt7u.o:(.data+0x0): undefined reference to `_doprnt' collect2: ld returned 1 exit status configure:22773: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | /* end confdefs.h. */ | /* Define _doprnt to an innocuous variant, in case declares _doprnt. | For example, HP-UX 11i declares gettimeofday. */ | #define _doprnt innocuous__doprnt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char _doprnt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef _doprnt | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | { | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char _doprnt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined (__stub__doprnt) || defined (__stub____doprnt) | choke me | #else | char (*f) () = _doprnt; | #endif | #ifdef __cplusplus | } | #endif | | int | main () | { | return f != _doprnt; | ; | return 0; | } configure:22798: result: no configure:22812: checking for working volatile configure:22835: gcc -c conftest.c >&5 configure:22841: $? = 0 configure:22845: test -z || test ! -s conftest.err configure:22848: $? = 0 configure:22851: test -s conftest.o configure:22854: $? = 0 configure:22865: result: yes configure:22875: checking for pid_t configure:22899: gcc -c conftest.c >&5 configure:22905: $? = 0 configure:22909: test -z || test ! -s conftest.err configure:22912: $? = 0 configure:22915: test -s conftest.o configure:22918: $? = 0 configure:22929: result: yes configure:22947: checking for unistd.h configure:22952: result: yes configure:22956: checking vfork.h usability configure:22968: gcc -c conftest.c >&5 conftest.c:102:19: error: vfork.h: No such file or directory configure:22974: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:22997: result: no configure:23001: checking vfork.h presence configure:23011: gcc -E conftest.c conftest.c:68:19: error: vfork.h: No such file or directory configure:23017: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include configure:23037: result: no configure:23072: checking for vfork.h configure:23079: result: no configure:23097: checking for fork configure:23154: gcc -o conftest conftest.c >&5 conftest.c:92: warning: conflicting types for built-in function 'fork' configure:23160: $? = 0 configure:23164: test -z || test ! -s conftest.err configure:23167: $? = 0 configure:23170: test -s conftest configure:23173: $? = 0 configure:23185: result: yes configure:23097: checking for vfork configure:23154: gcc -o conftest conftest.c >&5 configure:23160: $? = 0 configure:23164: test -z || test ! -s conftest.err configure:23167: $? = 0 configure:23170: test -s conftest configure:23173: $? = 0 configure:23185: result: yes configure:23196: checking for working fork configure:23219: gcc -o conftest conftest.c >&5 conftest.c: In function 'main': conftest.c:10: warning: incompatible implicit declaration of built-in function 'exit' configure:23222: $? = 0 configure:23224: ./conftest configure:23227: $? = 0 configure:23241: result: yes configure:23262: checking for working vfork configure:23395: result: yes configure:23427: checking for working memcmp configure:23475: gcc -o conftest conftest.c >&5 configure:23478: $? = 0 configure:23480: ./conftest configure:23483: $? = 0 configure:23497: result: yes configure:23509: checking for stdbool.h that conforms to C99 configure:23562: gcc -c conftest.c >&5 configure:23568: $? = 0 configure:23572: test -z || test ! -s conftest.err configure:23575: $? = 0 configure:23578: test -s conftest.o configure:23581: $? = 0 configure:23592: result: yes configure:23594: checking for _Bool configure:23618: gcc -c conftest.c >&5 configure:23624: $? = 0 configure:23628: test -z || test ! -s conftest.err configure:23631: $? = 0 configure:23634: test -s conftest.o configure:23637: $? = 0 configure:23648: result: yes configure:23667: checking for pid_t configure:23721: result: yes configure:23801: checking for bzero configure:23858: gcc -o conftest conftest.c >&5 conftest.c:98: warning: conflicting types for built-in function 'bzero' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for calloc configure:23858: gcc -o conftest conftest.c >&5 conftest.c:99: warning: conflicting types for built-in function 'calloc' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for dup2 configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for floor configure:23858: gcc -o conftest conftest.c >&5 conftest.c:101: warning: conflicting types for built-in function 'floor' /tmp/ccGkVKUq.o: In function `main': conftest.c:(.text+0xd): undefined reference to `floor' /tmp/ccGkVKUq.o:(.data+0x0): undefined reference to `floor' collect2: ld returned 1 exit status configure:23864: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | /* end confdefs.h. */ | /* Define floor to an innocuous variant, in case declares floor. | For example, HP-UX 11i declares gettimeofday. */ | #define floor innocuous_floor | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char floor (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef floor | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | { | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char floor (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined (__stub_floor) || defined (__stub___floor) | choke me | #else | char (*f) () = floor; | #endif | #ifdef __cplusplus | } | #endif | | int | main () | { | return f != floor; | ; | return 0; | } configure:23889: result: no configure:23801: checking for ftime configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for getdelim configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for getenv configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for getcwd configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for getpagesize configure:23889: result: yes configure:23801: checking for gettimeofday configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for isascii configure:23858: gcc -o conftest conftest.c >&5 conftest.c:107: warning: conflicting types for built-in function 'isascii' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for memmove configure:23858: gcc -o conftest conftest.c >&5 conftest.c:108: warning: conflicting types for built-in function 'memmove' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for memset configure:23858: gcc -o conftest conftest.c >&5 conftest.c:109: warning: conflicting types for built-in function 'memset' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for mkdir configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for munmap configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for pow configure:23858: gcc -o conftest conftest.c >&5 conftest.c:112: warning: conflicting types for built-in function 'pow' /tmp/ccmDYSu4.o: In function `main': conftest.c:(.text+0xd): undefined reference to `pow' /tmp/ccmDYSu4.o:(.data+0x0): undefined reference to `pow' collect2: ld returned 1 exit status configure:23864: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | /* end confdefs.h. */ | /* Define pow to an innocuous variant, in case declares pow. | For example, HP-UX 11i declares gettimeofday. */ | #define pow innocuous_pow | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pow (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pow | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | { | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char pow (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined (__stub_pow) || defined (__stub___pow) | choke me | #else | char (*f) () = pow; | #endif | #ifdef __cplusplus | } | #endif | | int | main () | { | return f != pow; | ; | return 0; | } configure:23889: result: no configure:23801: checking for putenv configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for rint configure:23858: gcc -o conftest conftest.c >&5 conftest.c:113: warning: conflicting types for built-in function 'rint' /tmp/ccaSNmau.o: In function `main': conftest.c:(.text+0xd): undefined reference to `rint' /tmp/ccaSNmau.o:(.data+0x0): undefined reference to `rint' collect2: ld returned 1 exit status configure:23864: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | /* end confdefs.h. */ | /* Define rint to an innocuous variant, in case declares rint. | For example, HP-UX 11i declares gettimeofday. */ | #define rint innocuous_rint | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char rint (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef rint | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | { | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char rint (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined (__stub_rint) || defined (__stub___rint) | choke me | #else | char (*f) () = rint; | #endif | #ifdef __cplusplus | } | #endif | | int | main () | { | return f != rint; | ; | return 0; | } configure:23889: result: no configure:23801: checking for select configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for setenv configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for sqrt configure:23858: gcc -o conftest conftest.c >&5 conftest.c:115: warning: conflicting types for built-in function 'sqrt' /tmp/ccw3VTFw.o: In function `main': conftest.c:(.text+0xd): undefined reference to `sqrt' /tmp/ccw3VTFw.o:(.data+0x0): undefined reference to `sqrt' collect2: ld returned 1 exit status configure:23864: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | /* end confdefs.h. */ | /* Define sqrt to an innocuous variant, in case declares sqrt. | For example, HP-UX 11i declares gettimeofday. */ | #define sqrt innocuous_sqrt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sqrt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sqrt | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | { | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char sqrt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined (__stub_sqrt) || defined (__stub___sqrt) | choke me | #else | char (*f) () = sqrt; | #endif | #ifdef __cplusplus | } | #endif | | int | main () | { | return f != sqrt; | ; | return 0; | } configure:23889: result: no configure:23801: checking for strcasecmp configure:23858: gcc -o conftest conftest.c >&5 conftest.c:115: warning: conflicting types for built-in function 'strcasecmp' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strchr configure:23858: gcc -o conftest conftest.c >&5 conftest.c:116: warning: conflicting types for built-in function 'strchr' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strcspn configure:23858: gcc -o conftest conftest.c >&5 conftest.c:117: warning: conflicting types for built-in function 'strcspn' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strdup configure:23858: gcc -o conftest conftest.c >&5 conftest.c:118: warning: conflicting types for built-in function 'strdup' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strerror configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strncasecmp configure:23858: gcc -o conftest conftest.c >&5 conftest.c:120: warning: conflicting types for built-in function 'strncasecmp' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strrchr configure:23858: gcc -o conftest conftest.c >&5 conftest.c:121: warning: conflicting types for built-in function 'strrchr' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strspn configure:23858: gcc -o conftest conftest.c >&5 conftest.c:122: warning: conflicting types for built-in function 'strspn' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strstr configure:23858: gcc -o conftest conftest.c >&5 conftest.c:123: warning: conflicting types for built-in function 'strstr' configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for strtol configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23801: checking for uname configure:23858: gcc -o conftest conftest.c >&5 configure:23864: $? = 0 configure:23868: test -z || test ! -s conftest.err configure:23871: $? = 0 configure:23874: test -s conftest configure:23877: $? = 0 configure:23889: result: yes configure:23963: checking for /bin/tcsh configure:23978: result: yes configure:24004: checking for zcat configure:24020: found /bin/zcat configure:24030: result: 1 configure:24047: checking for gzip configure:24063: found /bin/gzip configure:24073: result: 1 configure:24092: checking for latex configure:24108: found /usr/bin/latex configure:24118: result: latex configure:24140: checking for xxd configure:24156: found /usr/bin/xxd configure:24166: result: xxd configure:24188: checking for xmllint configure:24204: found /usr/bin/xmllint configure:24214: result: xmllint configure:24246: checking whether byte ordering is bigendian configure:24273: gcc -c conftest.c >&5 configure:24279: $? = 0 configure:24283: test -z || test ! -s conftest.err configure:24286: $? = 0 configure:24289: test -s conftest.o configure:24292: $? = 0 configure:24315: gcc -c conftest.c >&5 conftest.c: In function 'main': conftest.c:109: error: 'not' undeclared (first use in this function) conftest.c:109: error: (Each undeclared identifier is reported only once conftest.c:109: error: for each function it appears in.) conftest.c:109: error: expected ';' before 'big' configure:24321: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | /* end confdefs.h. */ | #include | #include | int | main () | { | | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | ; | return 0; | } configure:24395: result: no configure:24497: Setting OS from target... configure:24595: OS is Linux configure:24618: checking for _gfortran_compare_string in -lgfortran configure:24648: gcc -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -lgfortran >&5 configure:24654: $? = 0 configure:24658: test -z || test ! -s conftest.err configure:24661: $? = 0 configure:24664: test -s conftest configure:24667: $? = 0 configure:24680: result: yes configure:24848: checking for /cl.h configure:24863: result: no configure:24915: checking for cuInit in -lcuda -L/lib configure:24945: gcc -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -lcuda -L/lib >&5 /usr/bin/ld: cannot find -lcuda collect2: ld returned 1 exit status configure:24951: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char cuInit (); | int | main () | { | cuInit (); | ; | return 0; | } configure:24977: result: no configure:25014: checking for nvcc configure:25046: result: /bin/nvcc configure:25137: Setting CPU optimization... configure:25217: CPUTYPE is x86_64 configure:25219: checking CPU optimization... configure:25283: result: -m64 configure:25317: checking whether gcc accepts -m64 configure:25339: gcc -c -m64 -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN conftest.c >&5 configure:25342: $? = 0 configure:25345: test -s conftest.o configure:25348: $? = 0 configure:25360: result: yes configure:25574: checking for the pthreads library -lpthreads configure:25612: gcc -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -lpthreads >&5 cc1: warnings being treated as errors conftest.c: In function 'main': conftest.c:108: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 3) configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25521: checking whether pthreads work without any flags configure:25612: gcc -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c >&5 cc1: warnings being treated as errors conftest.c: In function 'main': conftest.c:108: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 3) configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25526: checking whether pthreads work with -Kthread configure:25612: gcc -o conftest -Kthread -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c >&5 gcc: unrecognized option '-Kthread' cc1: warnings being treated as errors conftest.c: In function 'main': conftest.c:108: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 3) configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25526: checking whether pthreads work with -kthread configure:25612: gcc -o conftest -kthread -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c >&5 gcc: unrecognized option '-kthread' cc1: warnings being treated as errors conftest.c: In function 'main': conftest.c:108: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 3) configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25574: checking for the pthreads library -llthread configure:25612: gcc -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -llthread >&5 cc1: warnings being treated as errors conftest.c: In function 'main': conftest.c:108: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 3) configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25526: checking whether pthreads work with -pthread configure:25612: gcc -o conftest -pthread -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c >&5 cc1: warnings being treated as errors conftest.c: In function 'main': conftest.c:108: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 3) configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25526: checking whether pthreads work with -pthreads configure:25612: gcc -o conftest -pthreads -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c >&5 gcc: unrecognized option '-pthreads' cc1: warnings being treated as errors conftest.c: In function 'main': conftest.c:108: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 3) configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25526: checking whether pthreads work with -mthreads configure:25612: gcc -o conftest -mthreads -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c >&5 cc1: error: unrecognized command line option "-mthreads" configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25574: checking for the pthreads library -lpthread configure:25612: gcc -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -lpthread >&5 cc1: warnings being treated as errors conftest.c: In function 'main': conftest.c:108: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 1) conftest.c:109: warning: null argument where non-null required (argument 3) configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25526: checking whether pthreads work with --thread-safe configure:25612: gcc -o conftest --thread-safe -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c >&5 cc1: error: unrecognized command line option "-fthread-safe" configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25526: checking whether pthreads work with -mt configure:25612: gcc -o conftest -mt -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c >&5 cc1: error: unrecognized command line option "-mt" configure:25618: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | /* end confdefs.h. */ | #include | int | main () | { | pthread_t th; pthread_join(th, 0); | pthread_attr_init(0); pthread_cleanup_push(0, 0); | pthread_create(0,0,0,0); pthread_cleanup_pop(0); | ; | return 0; | } configure:25645: result: no configure:25534: checking for pthread-config configure:25561: result: no configure:25860: checking for X configure:25965: gcc -E -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 conftest.c configure:25971: $? = 0 configure:26090: result: libraries /usr/lib64, headers configure:26103: x_includes set to /usr/X11R6/include If not correct specify using --x-includes= configure:26126: x_libraries set to /usr/lib64 If not correct specify using --x-libraries= configure:26133: checking for XOpenDisplay in -lX11 -L/usr/lib64 configure:26163: gcc -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -lX11 -L/usr/lib64 >&5 configure:26169: $? = 0 configure:26173: test -z || test ! -s conftest.err configure:26176: $? = 0 configure:26179: test -s conftest configure:26182: $? = 0 configure:26195: result: yes configure:26202: checking for XmuClientWindow in -lXmu -L/usr/lib64 configure:26232: gcc -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -lXmu -L/usr/lib64 >&5 configure:26238: $? = 0 configure:26242: test -z || test ! -s conftest.err configure:26245: $? = 0 configure:26248: test -s conftest configure:26251: $? = 0 configure:26264: result: yes configure:26274: Checking for directory specification of 3rd-party libraries... configure:26319: checking MNI directory configure:26344: result: MNI directory is /export/minc-1.4/ configure:26385: checking NIfTI directory configure:26421: result: NIfTI directory is not supplied configure:26455: checking VXL directory configure:26513: result: VXL directory is /export/vxl-1.13.0 configure:26549: checking FLTK directory configure:26609: result: FLTK directory is not supplied configure:26648: checking PETSc directory configure:26702: result: PETSc directory is not supplied configure:26740: checking MPI directory configure:26776: result: MPI directory is not supplied configure:26813: checking BOOST directory configure:26864: result: BOOST directory is not supplied configure:26901: checking ANN Approximate Nearest Neighbors directory configure:26949: result: ANN directory is not supplied configure:27010: checking Tcl/Tk config configure:27071: result: Enabled building of Tcl/Tk apps. configure:27109: checking for tixwish configure:27142: result: no configure:27149: checking for tixwish8.1.8.3 configure:27182: result: no configure:27189: checking for tixwish8.1.8.4 configure:27222: result: no configure:27231: result: INFO: tixwish not found. Use --with-tixwish=... to specify configure:27250: checking BLT directory configure:27268: result: BLT directory is not supplied configure:27292: checking XawPlus directory configure:27327: result: XawPlus directory is not supplied configure:27381: checking Tiff directory configure:27399: result: Tiff directory is not supplied configure:27435: checking Jpeg directory configure:27453: result: Jpeg directory is not supplied configure:27510: checking Expat directory configure:27528: result: Expat directory is not supplied configure: this is autotroll.m4 serial 5 configure:27755: checking for qmake configure:27789: result: no configure:27755: checking for qmake-qt4 configure:27789: result: no configure:27755: checking for qmake-qt3 configure:27789: result: no configure:27798: WARNING: Cannot find qmake in your PATH. Try using --with-qt. Disabling Qt apps configure:28452: checking CppUnit directory configure:28484: result: CppUnit directory is not supplied configure:28523: checking VTK config configure:28656: checking Cocoa VTK config configure:28756: checking KWWidgets config configure:28810: result: Enabled building of KWWidgets apps. configure:28846: checking wxWidgets config configure:28917: result: Enabled building of wxWidgets apps. configure:28951: checking GTS config configure:28978: result: Not building GTS apps. configure:29007: checking ITK directory configure:29082: result: Enabled building of ITK apps. configure:29151: Getting OpenGL info... configure:29164: checking GL directory configure:29182: result: OpenGL directory is not supplied configure:29270: checking windows.h usability configure:29282: gcc -c -DHAVE_WINDOWS_H=0 -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 conftest.c >&5 conftest.c:140:21: error: windows.h: No such file or directory configure:29288: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #else | # if HAVE_STDINT_H | # include | # endif | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:29311: result: no configure:29315: checking windows.h presence configure:29325: gcc -E -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 conftest.c conftest.c:106:21: error: windows.h: No such file or directory configure:29331: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | /* end confdefs.h. */ | #include configure:29351: result: no configure:29386: checking for windows.h configure:29393: result: no configure:29407: checking for OpenGL library configure:29446: gcc -o conftest -DHAVE_WINDOWS_H=0 -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -lopengl32 -L/usr/lib64 -lX11 -lm >&5 /usr/bin/ld: cannot find -lopengl32 collect2: ld returned 1 exit status configure:29452: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | /* end confdefs.h. */ | | # if HAVE_WINDOWS_H && defined(_WIN32) | # include | # endif | # include | | int | main () | { | glBegin(0) | ; | return 0; | } configure:29446: gcc -o conftest -DHAVE_WINDOWS_H=0 -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.c -lGL -L/usr/lib64 -lX11 -lm >&5 configure:29452: $? = 0 configure:29456: test -z || test ! -s conftest.err configure:29459: $? = 0 configure:29462: test -s conftest configure:29465: $? = 0 configure:29479: result: -lGL configure:29512: result: GL found: Setting GL_CFLAGS='-I/usr/X11R6/include ' and GL_LIBS='-lGL -L/usr/lib64 -lX11 -lm' configure:29529: checking for OpenGL Utility library configure:29582: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.cc -lglu32 -lGL -L/usr/lib64 -lX11 -lm >&5 /usr/bin/ld: cannot find -lglu32 collect2: ld returned 1 exit status configure:29588: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | /* end confdefs.h. */ | | # if HAVE_WINDOWS_H && defined(_WIN32) | # include | # endif | # include | | int | main () | { | gluBeginCurve(0) | ; | return 0; | } configure:29582: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -L/usr/lib64 -L/usr/X11R6/lib64 conftest.cc -lGLU -lGL -L/usr/lib64 -lX11 -lm >&5 configure:29588: $? = 0 configure:29592: test -z || test ! -s conftest.err configure:29595: $? = 0 configure:29598: test -s conftest configure:29601: $? = 0 configure:29623: result: -lGLU configure:29648: result: GLu found: Setting GLU_CFLAGS='-I/usr/X11R6/include ' and GLU_LIBS='-lGLU -lGL -L/usr/lib64 -lX11 -lm' configure:29680: result: Performing an off-site installation. configure:29761: Making sure that all libraries can be compiled... configure:29766: checking for floor in -lm configure:29796: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lm >&5 configure:29802: $? = 0 configure:29806: test -z || test ! -s conftest.err configure:29809: $? = 0 configure:29812: test -s conftest configure:29815: $? = 0 configure:29828: result: yes configure:29840: checking for gzopen in -lz configure:29870: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lz -lm >&5 configure:29876: $? = 0 configure:29880: test -z || test ! -s conftest.err configure:29883: $? = 0 configure:29886: test -s conftest configure:29889: $? = 0 configure:29902: result: yes configure:29914: checking for crypt in -lcrypt configure:29944: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lcrypt -lz -lm >&5 configure:29950: $? = 0 configure:29954: test -z || test ! -s conftest.err configure:29957: $? = 0 configure:29960: test -s conftest configure:29963: $? = 0 configure:29976: result: yes configure:30167: checking for nccreate in -lnetcdf configure:30197: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lnetcdf -lcrypt -lz -lm >&5 configure:30203: $? = 0 configure:30207: test -z || test ! -s conftest.err configure:30210: $? = 0 configure:30213: test -s conftest configure:30216: $? = 0 configure:30229: result: yes configure:30410: checking for miopen in -lminc configure:30440: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:30446: $? = 0 configure:30450: test -z || test ! -s conftest.err configure:30453: $? = 0 configure:30456: test -s conftest configure:30459: $? = 0 configure:30472: result: yes configure:30490: checking for transform_point in -lvolume_io configure:30520: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:30526: $? = 0 configure:30530: test -z || test ! -s conftest.err configure:30533: $? = 0 configure:30536: test -s conftest configure:30539: $? = 0 configure:30552: result: yes configure:30573: checking for /export/vxl-1.13.0/lib/libvnl.so configure:30588: result: no configure:30599: checking for main in -lvnl configure:30623: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:30629: $? = 0 configure:30633: test -z || test ! -s conftest.err configure:30636: $? = 0 configure:30639: test -s conftest configure:30642: $? = 0 configure:30655: result: yes configure:30673: checking for main in -lvnl_algo configure:30697: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:30703: $? = 0 configure:30707: test -z || test ! -s conftest.err configure:30710: $? = 0 configure:30713: test -s conftest configure:30716: $? = 0 configure:30729: result: yes configure:30938: result: found '/usr/lib/libboost_program_options.a' configure:30957: result: found '/usr/lib64/libboost_program_options.a' configure:31160: checking for znzread in -lznz configure:31190: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lznz -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lznz collect2: ld returned 1 exit status configure:31196: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char znzread (); | int | main () | { | znzread (); | ; | return 0; | } configure:31222: result: no configure:31450: checking for FTC_Manager_LookupSize in -lvtkfreetype configure:31480: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtkfreetype -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtkfreetype collect2: ld returned 1 exit status configure:31486: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char FTC_Manager_LookupSize (); | int | main () | { | FTC_Manager_LookupSize (); | ; | return 0; | } configure:31512: result: no configure:31517: checking for vtk_freetype_FTC_Manager_LookupSize in -lvtkfreetype configure:31547: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtkfreetype -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtkfreetype collect2: ld returned 1 exit status configure:31553: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char vtk_freetype_FTC_Manager_LookupSize (); | int | main () | { | vtk_freetype_FTC_Manager_LookupSize (); | ; | return 0; | } configure:31579: result: no configure:31584: checking for FTC_Manager_LookupSize in -lfreetype configure:31614: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lfreetype -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:31620: $? = 0 configure:31624: test -z || test ! -s conftest.err configure:31627: $? = 0 configure:31630: test -s conftest configure:31633: $? = 0 configure:31646: result: yes configure:31662: checking for gzopen in -lvtkzlib configure:31692: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtkzlib -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtkzlib collect2: ld returned 1 exit status configure:31698: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char gzopen (); | int | main () | { | gzopen (); | ; | return 0; | } configure:31724: result: no configure:31729: checking for gzopen in -lz configure:31791: result: yes configure:31967: checking for main in -lvtkpng -lz configure:31991: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtkpng -lz -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtkpng collect2: ld returned 1 exit status configure:31997: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | | int | main () | { | main (); | ; | return 0; | } configure:32023: result: no configure:32028: checking for main in -lpng configure:32052: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lpng -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:32058: $? = 0 configure:32062: test -z || test ! -s conftest.err configure:32065: $? = 0 configure:32068: test -s conftest configure:32071: $? = 0 configure:32084: result: yes configure:32100: checking for /libvtkCommon.so configure:32115: result: no configure:32126: checking for main in -lvtkCommon -lstdc++ configure:32150: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtkCommon -lstdc++ -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtkCommon collect2: ld returned 1 exit status configure:32156: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | | int | main () | { | main (); | ; | return 0; | } configure:32182: result: no configure:32193: result: INFO: vtkCommon lib not found. Try setting LDFLAGS, LD_LIBRARY_PATH and-or --with-vtk-dir. configure:32202: checking for main in -lverdict configure:32226: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lverdict -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lverdict collect2: ld returned 1 exit status configure:32232: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | | int | main () | { | main (); | ; | return 0; | } configure:32258: result: no configure:32263: checking for main in -lvtkverdict configure:32287: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtkverdict -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtkverdict collect2: ld returned 1 exit status configure:32293: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | | int | main () | { | main (); | ; | return 0; | } configure:32319: result: no configure:32331: checking for main in -lvtksqlite configure:32355: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtksqlite -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtksqlite collect2: ld returned 1 exit status configure:32361: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | | int | main () | { | main (); | ; | return 0; | } configure:32387: result: no configure:32397: checking for main in -lvtkMPEG2Encode configure:32421: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtkMPEG2Encode -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtkMPEG2Encode collect2: ld returned 1 exit status configure:32427: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | | int | main () | { | main (); | ; | return 0; | } configure:32453: result: no configure:32464: checking for main in -lvtkmetaio configure:32488: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lvtkmetaio -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lvtkmetaio collect2: ld returned 1 exit status configure:32494: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | | int | main () | { | main (); | ; | return 0; | } configure:32520: result: no configure:32659: checking for Tcl_Init in -ltcl8.5 configure:32689: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -ltcl8.5 -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -ltcl8.5 collect2: ld returned 1 exit status configure:32695: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Tcl_Init (); | int | main () | { | Tcl_Init (); | ; | return 0; | } configure:32721: result: no configure:32728: checking for Tcl_Init in -ltcl8.4 configure:32758: g++ -o conftest -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -ltcl8.4 -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:32764: $? = 0 configure:32768: test -z || test ! -s conftest.err configure:32771: $? = 0 configure:32774: test -s conftest configure:32777: $? = 0 configure:32790: result: yes configure:33099: checking for Tk_Init in -ltk8.5 configure:33129: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -ltk8.5 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -ltk8.5 collect2: ld returned 1 exit status configure:33135: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Tk_Init (); | int | main () | { | Tk_Init (); | ; | return 0; | } configure:33161: result: no configure:33168: checking for Tk_Init in -ltk8.4 configure:33198: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -ltk8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:33204: $? = 0 configure:33208: test -z || test ! -s conftest.err configure:33211: $? = 0 configure:33214: test -s conftest configure:33217: $? = 0 configure:33230: result: yes configure:33467: checking for Tix_Init in -lTix8.4.2 configure:33497: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lTix8.4.2 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lTix8.4.2 collect2: ld returned 1 exit status configure:33503: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Tix_Init (); | int | main () | { | Tix_Init (); | ; | return 0; | } configure:33529: result: no configure:33536: checking for Tix_Init in -ltix8.1.8.4 configure:33566: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -ltix8.1.8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -ltix8.1.8.4 collect2: ld returned 1 exit status configure:33572: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Tix_Init (); | int | main () | { | Tix_Init (); | ; | return 0; | } configure:33598: result: no configure:33605: checking for Tix_Init in -ltix8.1.8.3 configure:33635: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -ltix8.1.8.3 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -ltix8.1.8.3 collect2: ld returned 1 exit status configure:33641: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Tix_Init (); | int | main () | { | Tix_Init (); | ; | return 0; | } configure:33667: result: no configure:33674: checking for Tix_Init in -ltix8183 configure:33704: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -ltix8183 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -ltix8183 collect2: ld returned 1 exit status configure:33710: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Tix_Init (); | int | main () | { | Tix_Init (); | ; | return 0; | } configure:33736: result: no configure:33743: checking for Tix_Init in -lTix8.4 configure:33773: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lTix8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 configure:33779: $? = 0 configure:33783: test -z || test ! -s conftest.err configure:33786: $? = 0 configure:33789: test -s conftest configure:33792: $? = 0 configure:33805: result: yes configure:33906: checking for Blt_Init in -lBLT25 -ljpeg configure:33936: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lBLT25 -ljpeg -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lBLT25 collect2: ld returned 1 exit status configure:33942: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Blt_Init (); | int | main () | { | Blt_Init (); | ; | return 0; | } configure:33968: result: no configure:33975: checking for Blt_Init in -lBLT -ljpeg configure:34005: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lBLT -ljpeg -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lBLT collect2: ld returned 1 exit status configure:34011: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Blt_Init (); | int | main () | { | Blt_Init (); | ; | return 0; | } configure:34037: result: no configure:34045: checking for Blt_Init in -lBLT.2 -ljpeg configure:34075: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lBLT.2 -ljpeg -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lBLT.2 collect2: ld returned 1 exit status configure:34081: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Blt_Init (); | int | main () | { | Blt_Init (); | ; | return 0; | } configure:34107: result: no configure:34115: checking for Blt_Init in -lBLT24 -ljpeg configure:34145: g++ -o conftest -I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm conftest.cc -lBLT24 -ljpeg -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm >&5 /usr/bin/ld: cannot find -lBLT24 collect2: ld returned 1 exit status configure:34151: $? = 1 configure: failed program was: | /* confdefs.h. */ | | #define PACKAGE_NAME "Freesurfer" | #define PACKAGE_TARNAME "freesurfer" | #define PACKAGE_VERSION "dev5" | #define PACKAGE_STRING "Freesurfer dev5" | #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" | #define PACKAGE "freesurfer" | #define VERSION "dev5" | #ifdef __cplusplus | extern "C" void std::exit (int) throw (); using std::exit; | #endif | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_DIRENT_H 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_FLOAT_H 1 | #define HAVE_LIMITS_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_VALUES_H 1 | #define HAVE_WCTYPE_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDINT_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_PTRDIFF_T 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define SELECT_TYPE_ARG1 int | #define SELECT_TYPE_ARG234 (fd_set *) | #define SELECT_TYPE_ARG5 (struct timeval *) | #define RETSIGTYPE void | #define HAVE_VPRINTF 1 | #define HAVE_UNISTD_H 1 | #define HAVE_FORK 1 | #define HAVE_VFORK 1 | #define HAVE_WORKING_VFORK 1 | #define HAVE_WORKING_FORK 1 | #define HAVE__BOOL 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_BZERO 1 | #define HAVE_CALLOC 1 | #define HAVE_DUP2 1 | #define HAVE_FTIME 1 | #define HAVE_GETDELIM 1 | #define HAVE_GETENV 1 | #define HAVE_GETCWD 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_ISASCII 1 | #define HAVE_MEMMOVE 1 | #define HAVE_MEMSET 1 | #define HAVE_MKDIR 1 | #define HAVE_MUNMAP 1 | #define HAVE_PUTENV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRCHR 1 | #define HAVE_STRCSPN 1 | #define HAVE_STRDUP 1 | #define HAVE_STRERROR 1 | #define HAVE_STRNCASECMP 1 | #define HAVE_STRRCHR 1 | #define HAVE_STRSPN 1 | #define HAVE_STRSTR 1 | #define HAVE_STRTOL 1 | #define HAVE_UNAME 1 | #define BYTEORDER 1234 | #define XML_NS 1 | #define XML_DTD 1 | #define XML_CONTEXT_BYTES 1024 | #define HAVE_LIBM 1 | #define HAVE_LIBZ 1 | #define HAVE_LIBCRYPT 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBMINC 1 | #define HAVE_LIBVOLUME_IO 1 | #define HAVE_LIBVNL 1 | #define HAVE_LIBVNL_ALGO 1 | /* end confdefs.h. */ | | /* Override any gcc2 internal prototype to avoid an error. */ | #ifdef __cplusplus | extern "C" | #endif | /* We use char because int might match the return type of a gcc2 | builtin and then its argument prototype would still apply. */ | char Blt_Init (); | int | main () | { | Blt_Init (); | ; | return 0; | } configure:34177: result: no configure:34183: error: FATAL: libBLT not found. Check config.log. Set LDFLAGS or --with-BLT-dir. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-redhat-linux-gnu ac_cv_build_alias=x86_64-redhat-linux-gnu ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_c_volatile=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_MOC_set= ac_cv_env_MOC_value= ac_cv_env_QMAKE_set= ac_cv_env_QMAKE_value= ac_cv_env_QT_DIR_set= ac_cv_env_QT_DIR_value= ac_cv_env_QT_PATH_set= ac_cv_env_QT_PATH_value= ac_cv_env_RCC_set= ac_cv_env_RCC_value= ac_cv_env_UIC_set= ac_cv_env_UIC_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext= ac_cv_f77_compiler_gnu=yes ac_cv_file__bin_tcsh=yes ac_cv_file__cl_h=no ac_cv_file__export_vxl_1_13_0_lib_libvnl_so=no ac_cv_file__libvtkCommon_so=no ac_cv_func__doprnt=no ac_cv_func_bzero=yes ac_cv_func_calloc=yes ac_cv_func_closedir_void=no ac_cv_func_dup2=yes ac_cv_func_floor=no ac_cv_func_fork=yes ac_cv_func_fork_works=yes ac_cv_func_ftime=yes ac_cv_func_getcwd=yes ac_cv_func_getdelim=yes ac_cv_func_getenv=yes ac_cv_func_getpagesize=yes ac_cv_func_gettimeofday=yes ac_cv_func_isascii=yes ac_cv_func_lstat_dereferences_slashed_symlink=yes ac_cv_func_lstat_empty_string_bug=no ac_cv_func_memcmp_working=yes ac_cv_func_memmove=yes ac_cv_func_memset=yes ac_cv_func_mkdir=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_munmap=yes ac_cv_func_pow=no ac_cv_func_putenv=yes ac_cv_func_rint=no ac_cv_func_select=yes ac_cv_func_select_args='int,fd_set *,struct timeval *' ac_cv_func_setenv=yes ac_cv_func_sqrt=no ac_cv_func_stat_empty_string_bug=no ac_cv_func_strcasecmp=yes ac_cv_func_strchr=yes ac_cv_func_strcspn=yes ac_cv_func_strdup=yes ac_cv_func_strerror=yes ac_cv_func_strncasecmp=yes ac_cv_func_strrchr=yes ac_cv_func_strspn=yes ac_cv_func_strstr=yes ac_cv_func_strtod=yes ac_cv_func_strtol=yes ac_cv_func_uname=yes ac_cv_func_vfork=yes ac_cv_func_vfork_works=yes ac_cv_func_vprintf=yes ac_cv_have_x='have_x=yes ac_x_includes= ac_x_libraries=/usr/lib64' ac_cv_header_arpa_inet_h=yes ac_cv_header_dirent_dirent_h=yes ac_cv_header_dlfcn_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_float_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_limits_h=yes ac_cv_header_locale_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netdb_h=yes ac_cv_header_netinet_in_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_file_h=yes ac_cv_header_sys_ioctl_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_select_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_timeb_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_wait_h=yes ac_cv_header_time=yes ac_cv_header_unistd_h=yes ac_cv_header_values_h=yes ac_cv_header_vfork_h=no ac_cv_header_wctype_h=yes ac_cv_header_windows_h=no ac_cv_host=x86_64-redhat-linux-gnu ac_cv_host_alias=x86_64-redhat-linux-gnu ac_cv_lib_BLT24__ljpeg___Blt_Init=no ac_cv_lib_BLT25__ljpeg___Blt_Init=no ac_cv_lib_BLT_2__ljpeg___Blt_Init=no ac_cv_lib_BLT__ljpeg___Blt_Init=no ac_cv_lib_Tix8_4_2_Tix_Init=no ac_cv_lib_Tix8_4_Tix_Init=yes ac_cv_lib_X11__L_usr_lib64___XOpenDisplay=yes ac_cv_lib_Xmu__L_usr_lib64___XmuClientWindow=yes ac_cv_lib_crypt_crypt=yes ac_cv_lib_cuda__L_lib___cuInit=no ac_cv_lib_error_at_line=yes ac_cv_lib_freetype_FTC_Manager_LookupSize=yes ac_cv_lib_gfortran__gfortran_compare_string=yes ac_cv_lib_m_floor=yes ac_cv_lib_minc_miopen=yes ac_cv_lib_netcdf_nccreate=yes ac_cv_lib_png_main=yes ac_cv_lib_tcl8_4_Tcl_Init=yes ac_cv_lib_tcl8_5_Tcl_Init=no ac_cv_lib_tix8183_Tix_Init=no ac_cv_lib_tix8_1_8_3_Tix_Init=no ac_cv_lib_tix8_1_8_4_Tix_Init=no ac_cv_lib_tk8_4_Tk_Init=yes ac_cv_lib_tk8_5_Tk_Init=no ac_cv_lib_verdict_main=no ac_cv_lib_vnl_algo_main=yes ac_cv_lib_vnl_main=yes ac_cv_lib_volume_io_transform_point=yes ac_cv_lib_vtkCommon__lstdcpp_main=no ac_cv_lib_vtkMPEG2Encode_main=no ac_cv_lib_vtkfreetype_FTC_Manager_LookupSize=no ac_cv_lib_vtkfreetype_vtk_freetype_FTC_Manager_LookupSize=no ac_cv_lib_vtkmetaio_main=no ac_cv_lib_vtkpng__lz___main=no ac_cv_lib_vtksqlite_main=no ac_cv_lib_vtkverdict_main=no ac_cv_lib_vtkzlib_gzopen=no ac_cv_lib_z_gzopen=yes ac_cv_lib_znz_znzread=no ac_cv_objext=o ac_cv_path_NVCC=/bin/nvcc ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_HAS_GZIP=1 ac_cv_prog_HAS_ZCAT=1 ac_cv_prog_LATEX=latex ac_cv_prog_XMLLINT=xmllint ac_cv_prog_XXD=xxd ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_F77=g77 ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_acx_pthread_config=no ac_cv_prog_cc_cpuflags=yes ac_cv_prog_cc_g=yes ac_cv_prog_cc_stdc= ac_cv_prog_cxx_g=yes ac_cv_prog_egrep='grep -E' ac_cv_prog_f77_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_opendir='none required' ac_cv_struct_tm=time.h ac_cv_target=x86_64-redhat-linux-gnu ac_cv_target_alias=x86_64-redhat-linux-gnu ac_cv_type__Bool=yes ac_cv_type_mode_t=yes ac_cv_type_off_t=yes ac_cv_type_pid_t=yes ac_cv_type_ptrdiff_t=yes ac_cv_type_signal=void ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_prog_tar_ustar=gnutar ax_cv_check_gl_libgl=-lGL ax_cv_check_glu_libglu=-lGLU lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib )' lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file='/lib/libc.so.6 /lib/libc-2.5.so' lt_cv_ld_reload_flag=-r lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_MAGIC_CMD=/usr/bin/file lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_SED=/bin/sed lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGISTW][ABCDGISTW]*\)[ ][ ]*\(\)\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2\3 \3/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/ {"\2", (lt_ptr) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\''' lt_cv_sys_max_cmd_len=32768 lt_lt_cv_prog_compiler_c_o='"yes"' lt_lt_cv_prog_compiler_c_o_CXX='"yes"' lt_lt_cv_prog_compiler_c_o_F77='"yes"' lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ ]\\([ABCDGISTW][ABCDGISTW]*\\)[ ][ ]*\\(\\)\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2\\3 \\3/p'\''"' lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/ {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/ {\"\\2\", (lt_ptr) \\&\\2},/p'\''"' lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /export/src/freesurfer-dev-20120106/config/missing --run aclocal-1.9' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /export/src/freesurfer-dev-20120106/config/missing --run tar' ANN_CFLAGS='' ANN_DIR='' ANN_LIB='' ANN_LIBS='' AR='ar' AUTOCONF='${SHELL} /export/src/freesurfer-dev-20120106/config/missing --run autoconf' AUTOHEADER='${SHELL} /export/src/freesurfer-dev-20120106/config/missing --run autoheader' AUTOMAKE='${SHELL} /export/src/freesurfer-dev-20120106/config/missing --run automake-1.9' AWK='gawk' BLT_CFLAGS='' BLT_LIBS='' BOOST_CFLAGS='' BOOST_DIR='' BOOST_LIB='/usr/lib64' BOOST_LIBS='-L/usr/lib64' BOOST_PO_LIB='/usr/lib64/libboost_program_options.a' BUILDCUDA_FALSE='' BUILDCUDA_TRUE='#' BUILDOPENCL_FALSE='' BUILDOPENCL_TRUE='#' BUILDOPENCV_FALSE='#' BUILDOPENCV_TRUE='' BUILD_SCUBA_FALSE='' BUILD_SCUBA_TRUE='#' BYTEORDER='1234' CC='gcc' CCDEPMODE='depmode=gcc3' CCLD='g++' CFLAGS='' CPP='gcc -E' CPPFLAGS='-I/usr/X11R6/include -g -O3 -msse2 -mfpmath=sse -Wall -Werror -DUSE_SSE_MATHFUN -m64 -DLinux -DANSI -I/export/minc-1.4//include -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt -I/usr/X11R6/include -I/usr/X11R6/include ' CPPUNIT_CFLAGS='' CPPUNIT_DIR='' CPPUNIT_LIB='' CPPUNIT_LIBS='' CPUCAPS='PentiumIIILargeL2cache' CPUTYPE='x86_64' CUDA_CFLAGS='-I/include' CUDA_DIR='' CUDA_LIBS='-L/lib64 -lcudart' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='' CYGPATH_W='echo' DEFS='' DEPDIR='.deps' DYNAMIC_LIB_EXT='.so' ECHO='echo' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='grep -E' ENABLE_ITK_APPS_FALSE='#' ENABLE_ITK_APPS_TRUE='' ENABLE_KWWIDGETS_APPS_FALSE='#' ENABLE_KWWIDGETS_APPS_TRUE='' ENABLE_QT_APPS_FALSE='#' ENABLE_QT_APPS_TRUE='' ENABLE_TCLTK_APPS_FALSE='#' ENABLE_TCLTK_APPS_TRUE='' ENABLE_WXWIDGETS_APPS_FALSE='#' ENABLE_WXWIDGETS_APPS_TRUE='' ENABLE_XAWPLUS_APPS_FALSE='' ENABLE_XAWPLUS_APPS_TRUE='#' EXEEXT='' EXPAT_CFLAGS='' EXPAT_LIBS='' F77='g77' FCLIBS='' FFLAGS='-g -O3 -msse2 -mfpmath=sse' FLTK_CXXFLAGS='' FLTK_DIR='' FLTK_LDFLAGS='' FLTK_LIB='' FLTK_LIBS='' GLU_CFLAGS='-I/usr/X11R6/include ' GLU_LIBS='-lGLU -lGL -L/usr/lib64 -lX11 -lm' GL_CFLAGS='-I/usr/X11R6/include ' GL_LIBS='-lGL -L/usr/lib64 -lX11 -lm' GTS_CFLAGS='' GTS_DIR='' GTS_LIBS='' HAS_GZIP='1' HAS_ZCAT='1' HAVE_ANN_LIBS_FALSE='' HAVE_ANN_LIBS_TRUE='#' HAVE_BOOST_LIBS_FALSE='#' HAVE_BOOST_LIBS_TRUE='' HAVE_COCOA_VTK_LIBS_FALSE='' HAVE_COCOA_VTK_LIBS_TRUE='#' HAVE_CPPUNIT_FALSE='' HAVE_CPPUNIT_TRUE='#' HAVE_FERMI_GPU_FALSE='' HAVE_FERMI_GPU_TRUE='#' HAVE_FLTK_LIBS_FALSE='' HAVE_FLTK_LIBS_TRUE='#' HAVE_GFORTRAN_FALSE='#' HAVE_GFORTRAN_TRUE='' HAVE_GTS_LIBS_FALSE='' HAVE_GTS_LIBS_TRUE='#' HAVE_INTEL_COMPILER_FALSE='' HAVE_INTEL_COMPILER_TRUE='' HAVE_ITK_LIBS_FALSE='#' HAVE_ITK_LIBS_TRUE='' HAVE_LATEX_FALSE='#' HAVE_LATEX_TRUE='' HAVE_MAC_OSX_FALSE='' HAVE_MAC_OSX_TRUE='#' HAVE_MPI_LIBS_FALSE='' HAVE_MPI_LIBS_TRUE='#' HAVE_NIFTI_LIBS_FALSE='' HAVE_NIFTI_LIBS_TRUE='#' HAVE_OPEN64_COMPILER_FALSE='' HAVE_OPEN64_COMPILER_TRUE='#' HAVE_OPENGL='' HAVE_OPENGL_LIBS_FALSE='' HAVE_OPENGL_LIBS_TRUE='' HAVE_OPENMP_FALSE='' HAVE_OPENMP_TRUE='#' HAVE_PETSC_LIBS_FALSE='' HAVE_PETSC_LIBS_TRUE='#' HAVE_VTK_LIBS_FALSE='' HAVE_VTK_LIBS_TRUE='#' HAVE_XMLLINT_FALSE='#' HAVE_XMLLINT_TRUE='' HAVE_XXD_FALSE='#' HAVE_XXD_TRUE='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s' ITK_CFLAGS='' ITK_DIR='' ITK_LIB='' ITK_LIBS='' JPEG_CFLAGS='' JPEG_LIBS='' KWWIDGETS_CFLAGS='' KWWIDGETS_CXXFLAGS='' KWWIDGETS_DIR='' KWWIDGETS_LIBS='' LATEX='latex' LDFLAGS=' -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -L/usr/lib64 -L/usr/X11R6/lib64 -L/export/minc-1.4//lib -L/export/vxl-1.13.0/lib -lGL -L/usr/lib64 -lX11 -lm -lGLU -lGL -L/usr/lib64 -lX11 -lm ' LDFLAGS_TCL='' LIBDIRS_MGH='utils rgb unix dicom hipsstubs' LIBOBJS='' LIBS=' -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -ltk8.4 -ltcl8.4 -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu -lvnl_algo -lvnl -lvolume_io -lminc -lnetcdf -lcrypt -lz -lm ' LIBS_CUDA_MGH='utils/libutils_cuda.a fsgdf/libfsgdf.a rgb/librgb.a unix/libunix.a dicom/libdicom.a hipsstubs/libhipsstubs.a log/liblog.a xml2/libxml2.a jpeg/libjpeg.a tiff/libtiff.a expat/libexpat.a' LIBS_ICC='' LIBS_ITK='NO/libITKIO.a NO/libITKAlgorithms.a NO/libITKCommon.a NO/libITKNumerics.a NO/libITKMetaIO.a NO/libITKniftiio.a NO/libITKNrrdIO.a NO/libitkpng.a NO/libitksys.a NO/libitktiff.a NO/libitkv3p_netlib.a NO/libitkzlib.a NO/libitkgdcm.a NO/libitkopenjpeg.a NO/libitkjpeg8.a NO/libitkjpeg12.a NO/libitkjpeg16.a NO/libITKDICOMParser.a /usr/lib64/libuuid.a' LIBS_MGH=' utils/libutils.a fsgdf/libfsgdf.a rgb/librgb.a unix/libunix.a dicom/libdicom.a hipsstubs/libhipsstubs.a log/liblog.a xml2/libxml2.a jpeg/libjpeg.a tiff/libtiff.a expat/libexpat.a' LIBS_MNI='-lnetcdf -lvolume_io -lminc' LIBS_NIFTI='' LIBS_OPEN64='' LIBS_OPENGL='-lGLU -lGL -L/usr/lib64 -lX11 -lm ' LIBS_TCL='' LIBS_TCL_OPENGL='' LIBS_VXL='-lvnl_algo -lvnl -lvcl -lnetlib -lv3p_netlib' LIBS_XAWPLUS='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIB_BLAS_A='/usr/lib64/libblas.a' LIB_BLT='' LIB_BLT_JPEG='-ljpeg' LIB_CRYPT='-lcrypt' LIB_CUDA='' LIB_EXPAT='' LIB_G2C_A='' LIB_GFORTRAN='-lgfortran' LIB_JPEG='' LIB_LAPACK_A='/usr/lib64/liblapack.a' LIB_TCL='-ltcl8.4' LIB_TIFF='' LIB_TIX='-lTix8.4' LIB_TK='-ltk8.4' LIB_UUID_A='/usr/lib64/libuuid.a' LN_S='ln -s' LTLIBOBJS='' MAKEINFO='${SHELL} /export/src/freesurfer-dev-20120106/config/missing --run makeinfo' MNI_CFLAGS='-I/export/minc-1.4//include' MNI_DIR='/export/minc-1.4/' MNI_LIBS='-L/export/minc-1.4//lib' MOC='' MPI_CFLAGS='' MPI_DIR='' MPI_LIB='' MPI_LIBS='' NIFTI_CFLAGS='' NIFTI_DIR='' NIFTI_LIB='' NIFTI_LIBS='' NMR_INSTALL_FALSE='' NMR_INSTALL_TRUE='#' NVCC='/bin/nvcc' NVCCFLAGS='-arch sm_11 --ptxas-options=-v -g' OBJEXT='o' OPENCL_CFLAGS='' OPENCL_LIBS='' OPENCV_CXXFLAGS='-I/include' OPENCV_DIR='' OPENCV_LIBS='-L/lib -lm -lopencv_core -lopencv_imgproc -lopencv_highgui -lopencv_ml' OS='Linux' OS_CPPFLAGS='' OS_LDFLAGS='' PACKAGE='freesurfer' PACKAGE_BUGREPORT='freesurfer@nmr.mgh.harvard.edu' PACKAGE_NAME='Freesurfer' PACKAGE_STRING='Freesurfer dev5' PACKAGE_TARNAME='freesurfer' PACKAGE_VERSION='dev5' PATH_SEPARATOR=':' PETSC_CFLAGS='' PETSC_DIR='' PETSC_LIB='' PETSC_LIBS='' POW_LIB='' PTHREAD_CC='gcc' PTHREAD_CFLAGS='' PTHREAD_LIBS='' QDEC_BUNDLE_TARGET='' QMAKE='missing' QT_CFLAGS='' QT_CPPFLAGS='' QT_CXXFLAGS='' QT_DEFINES='' QT_DIR='' QT_INCPATH='' QT_LDFLAGS='' QT_LFLAGS='' QT_LIBS='' QT_PATH='' QT_VERSION_MAJOR='' RANLIB='ranlib' RCC='' SCUBA_BUNDLE_TARGET='' SET_MAKE='' SHARED_CFLAGS='-fPIC' SHARED_LDFLAGS='-shared' SHELL='/bin/sh' STRIP='strip' TCL_CFLAGS=' ' TCL_DIR='' TCL_LIB='' TCL_LIBS='' TEEM_32BIT='0' TEEM_DIO='0' TEEM_ENDIAN='1234' TEEM_QNANHIBIT='1' TESTS_ENVIRONMENT='' TIFF_CFLAGS='' TIFF_LIBS='' TIXWISH='' UIC='' USE_LOCAL_EXPAT_FALSE='#' USE_LOCAL_EXPAT_TRUE='' USE_LOCAL_JPEG_FALSE='#' USE_LOCAL_JPEG_TRUE='' USE_LOCAL_TIFF_FALSE='#' USE_LOCAL_TIFF_TRUE='' USE_SSE_MATHFUN_FALSE='#' USE_SSE_MATHFUN_TRUE='' VERSION='dev5' VTK_CFLAGS='' VTK_COCOA_CFLAGS='' VTK_COCOA_CXXFLAGS='' VTK_COCOA_DIR='' VTK_COCOA_LIB='' VTK_COCOA_LIBS='' VTK_COCOA_LIB_VTK='' VTK_CXXFLAGS='' VTK_DIR='' VTK_EXPAT_LIB='../expat/libexpat.a' VTK_FREETYPE_LIB='-lfreetype' VTK_JPEG_LIB='../jpeg/libjpeg.a' VTK_LIB='' VTK_LIBS='' VTK_LIB_VTK='' VTK_METAIO_LIB='' VTK_MPEG2ENCODE_LIB='' VTK_PNG_LIB='-lpng' VTK_SQLITE_LIB='' VTK_TIFF_LIB='../tiff/libtiff.a' VTK_VERDICT_LIB='' VTK_Z_LIB='-lz' VXL_CFLAGS=' -I/export/vxl-1.13.0/include/vxl/core -I/export/vxl-1.13.0/include/vxl/vcl -I/export/vxl-1.13.0/include/vxl/v3p/netlib -I/export/vxl-1.13.0/include/vxl/v3p/netlib/opt' VXL_DIR='/export/vxl-1.13.0' VXL_LIB='/export/vxl-1.13.0/lib' VXL_LIBS='-L/export/vxl-1.13.0/lib' WXWIDGETS_CFLAGS='' WXWIDGETS_CXXFLAGS='' WXWIDGETS_DIR='' WXWIDGETS_GL_LIBS='' WXWIDGETS_LIBS='' WXWIDGETS_OPTIONAL_LIBS='' XAWPLUS_CFLAGS='' XAWPLUS_CXXFLAGS='' XAWPLUS_DIR='' XAWPLUS_LIBS='' XMLLINT='xmllint' XXD='xxd' X_LIBS=' -L/usr/lib64 -lX11 -L/usr/lib64 -lXmu' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_F77='g77' ac_ct_RANLIB='ranlib' ac_ct_STRIP='strip' acx_pthread_config='no' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__leading_dot='.' am__quote='' am__tar='tar --format=ustar -chf - "$$tardir"' am__untar='tar -xf -' bindir='${exec_prefix}/bin' build='x86_64-redhat-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='redhat' datadir='${prefix}/share' exec_prefix='NONE' gl_cflags='' gl_libs='' host='x86_64-redhat-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='redhat' includedir='${prefix}/include' infodir='${prefix}/info' install_sh='/export/src/freesurfer-dev-20120106/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localstatedir='${prefix}/var' mandir='${prefix}/man' mkdir_p='mkdir -p --' oldincludedir='/usr/include' pkgs_includes='' pkgs_libraries='' prefix='NONE' program_transform_name='s,x,x,' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target='x86_64-redhat-linux-gnu' target_alias='' target_cpu='x86_64' target_os='linux-gnu' target_vendor='redhat' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define BYTEORDER 1234 #define HAVE_ARPA_INET_H 1 #define HAVE_BZERO 1 #define HAVE_CALLOC 1 #define HAVE_DIRENT_H 1 #define HAVE_DLFCN_H 1 #define HAVE_DUP2 1 #define HAVE_FCNTL_H 1 #define HAVE_FLOAT_H 1 #define HAVE_FORK 1 #define HAVE_FTIME 1 #define HAVE_GETCWD 1 #define HAVE_GETDELIM 1 #define HAVE_GETENV 1 #define HAVE_GETPAGESIZE 1 #define HAVE_GETPAGESIZE 1 #define HAVE_GETTIMEOFDAY 1 #define HAVE_INTTYPES_H 1 #define HAVE_ISASCII 1 #define HAVE_LIBCRYPT 1 #define HAVE_LIBM 1 #define HAVE_LIBMINC 1 #define HAVE_LIBNETCDF 1 #define HAVE_LIBVNL 1 #define HAVE_LIBVNL_ALGO 1 #define HAVE_LIBVOLUME_IO 1 #define HAVE_LIBZ 1 #define HAVE_LIMITS_H 1 #define HAVE_LOCALE_H 1 #define HAVE_MALLOC_H 1 #define HAVE_MEMMOVE 1 #define HAVE_MEMORY_H 1 #define HAVE_MEMORY_H 1 #define HAVE_MEMSET 1 #define HAVE_MKDIR 1 #define HAVE_MMAP 1 #define HAVE_MUNMAP 1 #define HAVE_NETDB_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_PTRDIFF_T 1 #define HAVE_PUTENV 1 #define HAVE_SELECT 1 #define HAVE_SETENV 1 #define HAVE_STDBOOL_H 1 #define HAVE_STDDEF_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDINT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRCASECMP 1 #define HAVE_STRCHR 1 #define HAVE_STRCSPN 1 #define HAVE_STRDUP 1 #define HAVE_STRERROR 1 #define HAVE_STRINGS_H 1 #define HAVE_STRINGS_H 1 #define HAVE_STRING_H 1 #define HAVE_STRING_H 1 #define HAVE_STRNCASECMP 1 #define HAVE_STRRCHR 1 #define HAVE_STRSPN 1 #define HAVE_STRSTR 1 #define HAVE_STRTOL 1 #define HAVE_SYS_FILE_H 1 #define HAVE_SYS_IOCTL_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_TIMEB_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_UNAME 1 #define HAVE_UNISTD_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UNISTD_H 1 #define HAVE_UNISTD_H 1 #define HAVE_VALUES_H 1 #define HAVE_VFORK 1 #define HAVE_VPRINTF 1 #define HAVE_WCTYPE_H 1 #define HAVE_WORKING_FORK 1 #define HAVE_WORKING_VFORK 1 #define HAVE__BOOL 1 #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 #define PACKAGE "freesurfer" #define PACKAGE_BUGREPORT "freesurfer@nmr.mgh.harvard.edu" #define PACKAGE_NAME "Freesurfer" #define PACKAGE_STRING "Freesurfer dev5" #define PACKAGE_TARNAME "freesurfer" #define PACKAGE_VERSION "dev5" #define RETSIGTYPE void #define SELECT_TYPE_ARG1 int #define SELECT_TYPE_ARG234 (fd_set *) #define SELECT_TYPE_ARG5 (struct timeval *) #define STDC_HEADERS 1 #define STDC_HEADERS 1 #define TIME_WITH_SYS_TIME 1 #define VERSION "dev5" #define XML_CONTEXT_BYTES 1024 #define XML_DTD 1 #define XML_NS 1 #endif #ifdef __cplusplus extern "C" void std::exit (int) throw (); using std::exit; configure: exit 1